prot_D-herbacea_F_contig110.903.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig110.903.1
Unique Nameprot_D-herbacea_F_contig110.903.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length236
Homology
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BLAST of mRNA_D-herbacea_F_contig110.903.1 vs. uniprot
Match: D8LTY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY9_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 3.650e-63
Identity = 129/237 (54.43%), Postives = 152/237 (64.14%), Query Frame = 0 
Query:    1 MKAEIAELQSETTTSLDRAIAAAQAASTVGNHVSEGLQEQREKMGQIDADAREIDADLKRTSYNLKHGFTWRGALTSPFRRASKKPQGAGIGGGASRDVSAVYKDDYN-SKETKGAPAHGGAVGG--ANRATGEGIVGPPRRISKNKGGXXXXXXXXXXXXSNTAALKAPEHVPEGFDKQLDQLDGLLDGLNFQAKAIGAELRQQNEGVEALGASVDPLRVEAASQAKQIKRRFRVK 234
            MKAEIAELQ+ TT SLDRAIAAA+A ++VG      L+EQRE+MG+IDA+AR ID  LKRT +NLK+G TWRGALT+PFRR                D+S V+KDD+  S    GAPAHGG+     + +  G    G PR+    K G               AA K PE+VPEGF+ QLD LD LLDGL  QAK IGAEL+QQNEG+E LG  V+PLR E A QAKQIKRRF VK
Sbjct:   42 MKAEIAELQAGTTASLDRAIAAAEATASVGARTQVTLKEQREQMGEIDAEARAIDGTLKRTGHNLKYGLTWRGALTAPFRRKXXXXXXXXXXXITGGDISPVFKDDFRQSTPPGGAPAHGGSTSSTPSPKKGGRLKFGSPRK----KAGAARAEEI-----GTKAASKLPENVPEGFETQLDTLDSLLDGLTVQAKEIGAELKQQNEGIEVLGERVEPLRQETAFQAKQIKRRFGVK 269
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.903.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTY9_ECTSI3.650e-6354.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.110coord: 1..69
e-value: 4.3E-10
score: 41.5
NoneNo IPR availableGENE3D1.20.5.110coord: 171..229
e-value: 1.3E-6
score: 30.5
NoneNo IPR availablePANTHERPTHR19305SYNAPTOSOMAL ASSOCIATED PROTEINcoord: 2..229
NoneNo IPR availablePANTHERPTHR19305:SF9SYNAPTOSOMAL-ASSOCIATED PROTEIN 29coord: 2..229
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 165..218
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 2..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig110contigD-herbacea_F_contig110:440312..441019 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig110.903.1mRNA_D-herbacea_F_contig110.903.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig110 440225..442005 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig110.903.1 ID=prot_D-herbacea_F_contig110.903.1|Name=mRNA_D-herbacea_F_contig110.903.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=236bp
MKAEIAELQSETTTSLDRAIAAAQAASTVGNHVSEGLQEQREKMGQIDAD
AREIDADLKRTSYNLKHGFTWRGALTSPFRRASKKPQGAGIGGGASRDVS
AVYKDDYNSKETKGAPAHGGAVGGANRATGEGIVGPPRRISKNKGGKGGA
AGAAGSPGSNTAALKAPEHVPEGFDKQLDQLDGLLDGLNFQAKAIGAELR
QQNEGVEALGASVDPLRVEAASQAKQIKRRFRVKG*
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