mRNA_D-herbacea_F_contig110.903.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig110.903.1
Unique NamemRNA_D-herbacea_F_contig110.903.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig110.903.1 vs. uniprot
Match: D8LTY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY9_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 2.040e-63
Identity = 141/263 (53.61%), Postives = 165/263 (62.74%), Query Frame = 1 
Query:   10 LWAPRDPTAGATAGGTGSVPTRDVASMKAEIAELQSETTTSLDRAIAAAQAASTVGNHVSEGLQEQREKMGQIDADAREIDADLKRTSYNLKHGFTWRGALTSPFRRASKKPQGAGIGGGASRDVSAVYKDDYN-SKETKGAPAHGGAVGG--ANRATGEGIVGPPRRISKNKGGXXXXXXXXXXXXSNTAALKAPEHVPEGFDKQLDQLDGLLDGLNFQAKAIGAELRQQNEGVEALGASVDPLRVEAASQAKQIKRRFRVK 789
            LW        A+ GG  S P RDVASMKAEIAELQ+ TT SLDRAIAAA+A ++VG      L+EQRE+MG+IDA+AR ID  LKRT +NLK+G TWRGALT+PFRR                D+S V+KDD+  S    GAPAHGG+     + +  G    G PR+    K G               AA K PE+VPEGF+ QLD LD LLDGL  QAK IGAEL+QQNEG+E LG  V+PLR E A QAKQIKRRF VK
Sbjct:   17 LWPVDKQPNAASRGGDDSSP-RDVASMKAEIAELQAGTTASLDRAIAAAEATASVGARTQVTLKEQREQMGEIDAEARAIDGTLKRTGHNLKYGLTWRGALTAPFRRKXXXXXXXXXXXITGGDISPVFKDDFRQSTPPGGAPAHGGSTSSTPSPKKGGRLKFGSPRK----KAGAARAEEI-----GTKAASKLPENVPEGFETQLDTLDSLLDGLTVQAKEIGAELKQQNEGIEVLGERVEPLRQETAFQAKQIKRRFGVK 269
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTY9_ECTSI2.040e-6353.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig110contigD-herbacea_F_contig110:440225..442005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003830.1
Exons1
Model size1781
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig110.903.1prot_D-herbacea_F_contig110.903.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig110 440312..441019 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.9379015-UTR-D-herbacea_F_contig110:440224..4403111622927515.9379015-UTR-D-herbacea_F_contig110:440224..440311Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 440225..440311 +
1690790211.2868452-UTR-D-herbacea_F_contig110:440224..4403111690790211.2868452-UTR-D-herbacea_F_contig110:440224..440311Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 440225..440311 +
1622927515.9656901-UTR-D-herbacea_F_contig110:441019..4420051622927515.9656901-UTR-D-herbacea_F_contig110:441019..442005Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 441020..442005 +
1690790211.3048222-UTR-D-herbacea_F_contig110:441019..4420051690790211.3048222-UTR-D-herbacea_F_contig110:441019..442005Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 441020..442005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.9518013-CDS-D-herbacea_F_contig110:440311..4410191622927515.9518013-CDS-D-herbacea_F_contig110:440311..441019Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 440312..441019 +
1690790211.2955658-CDS-D-herbacea_F_contig110:440311..4410191690790211.2955658-CDS-D-herbacea_F_contig110:440311..441019Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 440312..441019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig110.903.1

>prot_D-herbacea_F_contig110.903.1 ID=prot_D-herbacea_F_contig110.903.1|Name=mRNA_D-herbacea_F_contig110.903.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=236bp
MKAEIAELQSETTTSLDRAIAAAQAASTVGNHVSEGLQEQREKMGQIDAD
AREIDADLKRTSYNLKHGFTWRGALTSPFRRASKKPQGAGIGGGASRDVS
AVYKDDYNSKETKGAPAHGGAVGGANRATGEGIVGPPRRISKNKGGKGGA
AGAAGSPGSNTAALKAPEHVPEGFDKQLDQLDGLLDGLNFQAKAIGAELR
QQNEGVEALGASVDPLRVEAASQAKQIKRRFRVKG*
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mRNA from alignment at D-herbacea_F_contig110:440225..442005+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig110.903.1 ID=mRNA_D-herbacea_F_contig110.903.1|Name=mRNA_D-herbacea_F_contig110.903.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1781bp|location=Sequence derived from alignment at D-herbacea_F_contig110:440225..442005+ (Desmarestia herbacea DmunF female)
TCCTCCCCGCTATGGGCTCCGAGGGACCCCACGGCGGGGGCAACCGCAGG
CGGGACGGGGAGCGTGCCCACCCGCGACGTAGCGTCCATGAAGGCAGAGA
TCGCAGAGCTCCAGTCGGAAACTACCACTTCCCTGGACCGCGCGATCGCA
GCGGCTCAAGCGGCTTCGACAGTGGGAAACCACGTATCTGAGGGCCTACA
AGAGCAGCGCGAGAAGATGGGACAAATCGACGCCGATGCCAGGGAGATCG
ATGCTGACCTCAAGCGAACAAGCTACAACCTCAAGCATGGCTTCACCTGG
CGCGGGGCTCTCACGTCGCCGTTCCGCAGGGCTTCCAAGAAGCCCCAGGG
TGCGGGCATTGGCGGTGGGGCGAGCCGAGACGTCTCTGCCGTGTATAAAG
ATGACTACAACAGCAAGGAAACGAAAGGAGCACCCGCACACGGCGGGGCA
GTCGGCGGGGCAAATAGGGCCACAGGAGAAGGCATAGTCGGCCCACCTCG
AAGAATCAGCAAAAACAAGGGTGGCAAGGGGGGGGCGGCGGGGGCGGCAG
GTAGCCCTGGCAGCAATACCGCTGCGCTGAAGGCGCCAGAGCATGTACCT
GAAGGGTTCGACAAGCAGCTGGATCAGCTGGACGGATTGCTGGACGGTTT
GAACTTTCAGGCCAAGGCCATTGGTGCGGAGCTGCGCCAGCAGAATGAGG
GGGTAGAGGCGCTCGGGGCGAGCGTGGACCCGTTGCGCGTGGAGGCGGCG
AGCCAGGCGAAGCAGATCAAGCGTCGATTTCGGGTGAAAGGATAGCTATA
GAACTTAAAGGAGTTAGTTCCATGGGTGGTGGTGGGCTCTCGTTGCGTAT
TTTGTATTTGGTATTTGGTGCACATTGTACGAATCATGTCTCGAATAATC
GTTGTGGGCATACTACTCTGTACTGCCCTTGTACTACGACTACCGTCGTC
GTTTGTGCTTCGAATTTCTGGTACGACGAGTACACAGCAGGTAGGTACTC
GTACCTCTTTTTTTCGGAAAATGTTGTGCTCTGCTGTGTGACTTGACTCT
CGAGCGTATTTTCCTCTCGCAGCCTATGATAGGATATTGCACTTTTGTTT
CGTTCGGTACTGCGTCGGGTGTTACCGTGTTGCCGTCGTCATACTTACTA
TCATGCGTTACGAGTCTGCTGTATATATCGTACGAGTAATACGTCCTACC
ATCATAACTACTACAGACTGTTGTTGGACCTGGTAGTGAACGGTTCACGG
ACCAGGCGGCGCAAGCTCCGAATAAACCCAAGCGTACAGAGGGCATCCAT
CATAGCAGGTACTCGTACGCTTTACCGCGAGAGAGGGCTGGCTGTTGATT
GGGAGTGCTCACGCGGTTATCTATTGCTGCTGCACGCCCTTTGCTGTGCG
GTCATGCGTGCGCCCTGCACACTCGAAGCGTTTGATAGGAAGCAAATATT
GTTGTGAGAGCTGTTCCAAAGCAAAAATAGCCAGTTGATTGTTGATTGTA
CGAGTGCACTACTTGTACGTAGAATACTACTCGAAGTATTATATTAATAG
TAGCTTGTTGTGTTCATGTTCATGTAAAGTGAGTATCAGAGGACTTGTGC
TGTGCAGTACCAGTACGAGATCTATCGTACCACTCTGCAAGCTTCGGCAA
TGCGGTGAATAAATACGGTGAATAATTCAGCCAAGTCGTCGAATGCATAG
CTTTTTTTTGTTTGTGTTTCGCAACCAGAAGGTCAGCTATTATTACTCGT
ACTGTTTTCGACTGCGCAGAGATTTGAACCC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig110:440225..442005+

>mRNA_D-herbacea_F_contig110.903.1 ID=mRNA_D-herbacea_F_contig110.903.1|Name=mRNA_D-herbacea_F_contig110.903.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1416bp|location=Sequence derived from alignment at D-herbacea_F_contig110:440225..442005+ (Desmarestia herbacea DmunF female)
ATGAAGGCAGAGATCGCAGAGCTCCAGTCGGAAACTACCACTTCCCTGGA
CCGCGCGATCGCAGCGGCTCAAGCGGCTTCGACAGTGGGAAACCACGTAT
CTGAGGGCCTACAAGAGCAGCGCGAGAAGATGGGACAAATCGACGCCGAT
GCCAGGGAGATCGATGCTGACCTCAAGCGAACAAGCTACAACCTCAAGCA
TGGCTTCACCTGGCGCGGGGCTCTCACGTCGCCGTTCCGCAGGGCTTCCA
AGAAGCCCCAGGGTGCGGGCATTGGCGGTGGGGCGAGCCGAGACGTCTCT
GCCGTGTATAAAGATGACTACAACAGCAAGGAAACGAAAGGAGCACCCGC
ACACGGCGGGGCAGTCGGCGGGGCAAATAGGGCCACAGGAGAAGGCATAG
TCGGCCCACCTCGAAGAATCAGCAAAAACAAGGGTGGCAAGGGGGGGGCG
GCGGGGGCGGCAGGTAGCCCTGGCAGCAATACCGCTGCGCTGAAGGCGCC
AGAGCATGTACCTGAAGGGTTCGACAAGCAGCTGGATCAGCTGGACGGAT
TGCTGGACGGTTTGAACTTTCAGGCCAAGGCCATTGGTGCGGAGCTGCGC
CAGCAGAATGAGGGGGTAGAGGCGCTCGGGGCGAGCGTGGACCCGTTGCG
CGTGGAGGCGGCGAGCCAGGCGAAGCAGATCAAGCGTCGATTTCGGGTGA
AAGGATAGATGAAGGCAGAGATCGCAGAGCTCCAGTCGGAAACTACCACT
TCCCTGGACCGCGCGATCGCAGCGGCTCAAGCGGCTTCGACAGTGGGAAA
CCACGTATCTGAGGGCCTACAAGAGCAGCGCGAGAAGATGGGACAAATCG
ACGCCGATGCCAGGGAGATCGATGCTGACCTCAAGCGAACAAGCTACAAC
CTCAAGCATGGCTTCACCTGGCGCGGGGCTCTCACGTCGCCGTTCCGCAG
GGCTTCCAAGAAGCCCCAGGGTGCGGGCATTGGCGGTGGGGCGAGCCGAG
ACGTCTCTGCCGTGTATAAAGATGACTACAACAGCAAGGAAACGAAAGGA
GCACCCGCACACGGCGGGGCAGTCGGCGGGGCAAATAGGGCCACAGGAGA
AGGCATAGTCGGCCCACCTCGAAGAATCAGCAAAAACAAGGGTGGCAAGG
GGGGGGCGGCGGGGGCGGCAGGTAGCCCTGGCAGCAATACCGCTGCGCTG
AAGGCGCCAGAGCATGTACCTGAAGGGTTCGACAAGCAGCTGGATCAGCT
GGACGGATTGCTGGACGGTTTGAACTTTCAGGCCAAGGCCATTGGTGCGG
AGCTGCGCCAGCAGAATGAGGGGGTAGAGGCGCTCGGGGCGAGCGTGGAC
CCGTTGCGCGTGGAGGCGGCGAGCCAGGCGAAGCAGATCAAGCGTCGATT
TCGGGTGAAAGGATAG
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