prot_D-herbacea_F_contig106.605.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig106.605.1
Unique Nameprot_D-herbacea_F_contig106.605.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length571
Homology
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BLAST of mRNA_D-herbacea_F_contig106.605.1 vs. uniprot
Match: A0A6H5JE26_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE26_9PHAE)

HSP 1 Score: 652 bits (1682), Expect = 5.160e-223
Identity = 341/549 (62.11%), Postives = 422/549 (76.87%), Query Frame = 0 
Query:    5 DETDVRAFWNHVRHTTGGRFASWDTFSAGFETYMRRRFPGEMSRV-RAF-PPVEMVLRYAFGRGSKARASASARVTPNDLNLFLKRFGPMRSCLLKTSRSLFDDSGCLAPWFHGMMSRDEAARAIDDWEASHGSGK-QIGVFLFRYSNRPEQPEISFSYRSTDRRMLSCLVLNNGAGGYVLPTAGQRRAWQDLREFVSD-RRQYFVHPVPSALHLECKQELEVREK--EWMRTPEVKIADARHLFGDAKALVYT---DIEDGREPVQVMEEALGIIDEVVSLVRDSELDE--PQLEAKALRLAGDIQWKLRRYDEGMVSYQRCLHVVSEAQ---DSQAAESPVVTVSVLSHVHRLLAGYFLREGLTSKALYHFGELVACTTDEDARQQLVEEFRRNEEFRVATESISHESVQAVLDEGITYFRRKDYEPAGVKFEKALCDARCIGEGKEEARALGNLATVEYKTCRIPAAIRKYRTCVQLLRQQGDQVTERKILNYLVMCCIEDQRWEPAKLFHKQLSKLAESDDNISHLRRLEVRIQEGMDAQAKEQG 539
            DE D RAFW+ V+ TTG R ASWDTFSA FETY+RR +  EMS++ RA     EMVLRYAF RGS ARA+A  RV P  L LFL RFGPM+SCL+K +RSLFD+SGCL PWFHG +SR+EA RAI++WEAS G+G+ Q GVFLFRYS+       SF  +  +RR+++CL+ N G  GY LP       W+DLREFV++ RR  F HPVPSALH EC +E+E R +  +++ TPE +IA AR LFGDA+ +VY+   D++ G E  +++E ALG++++V  ++R+ E D+  PQL+AKALRL GDI WKL R +EG+ SY RCL VVSEA+   D+    SPVVT+SVLSH+H+LLA YFL  G   + L HF ELVACTTDEDARQQLV++FRRN+ FR AT  ++  SVQ VLDEGI+YFR +DY PAGV+FEK L +ARCIGEG+ EARALGNLATV+YKT RIPAAIR+YRTCVQLLRQQG+QVTERKILNYLVMCCIE QRW PAKLFH+QLSKLAES++N+ HL RL+ RI+EGM  QA+++G
Sbjct:    4 DEADTRAFWDLVQRTTGARSASWDTFSATFETYLRRHYAAEMSQLPRATRAEAEMVLRYAFDRGSPARAAAGERVAPKHLALFLTRFGPMKSCLIKAARSLFDESGCLVPWFHGKLSREEARRAIEEWEASRGNGREQRGVFLFRYSDWHSTICFSFRRKKGERRLVTCLINNEGRRGYTLPDTSGDGCWRDLREFVAEQRRGDFRHPVPSALHRECVEEIEARRRAEQFVPTPENQIAHARQLFGDAQTMVYSRDRDMKAGFEATRILEGALGLVEKVEHILRELEQDQGDPQLQAKALRLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLSHIHQLLAEYFLSRGWHERGLDHFSELVACTTDEDARQQLVDDFRRNDGFRRATAGLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRNARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEENVLHLARLQERIEEGMALQARQEG 552
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BLAST of mRNA_D-herbacea_F_contig106.605.1 vs. uniprot
Match: D8LBM4_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM4_ECTSI)

HSP 1 Score: 639 bits (1649), Expect = 1.660e-217
Identity = 335/547 (61.24%), Postives = 419/547 (76.60%), Query Frame = 0 
Query:    5 DETDVRAFWNHVRHTTGGRFASWDTFSAGFETYMRRRFPGEMSRV-RAF-PPVEMVLRYAFGRGSKARASASARVTPNDLNLFLKRFGPMRSCLLKTSRSLFDDSGCLAPWFHGMMSRDEAARAIDDWEASHGSGK-QIGVFLFRYSNRPEQPEISFSYRSTDRRMLSCLVLNNGAGGYVLPTAGQRRAWQDLREFVSD-RRQYFVHPVPSALHLECKQELEVREK--EWMRTPEVKIADARHLFGDAKALVYT-DIEDGREPVQVMEEALGIIDEVVSLVRDSELDE--PQLEAKALRLAGDIQWKLRRYDEGMVSYQRCLHVVSEAQDSQAAE---SPVVTVSVLSHVHRLLAGYFLREGLTSKALYHFGELVACTTDEDARQQLVEEFRRNEEFRVATESISHESVQAVLDEGITYFRRKDYEPAGVKFEKALCDARCIGEGKEEARALGNLATVEYKTCRIPAAIRKYRTCVQLLRQQGDQVTERKILNYLVMCCIEDQRWEPAKLFHKQLSKLAESDDNISHLRRLEVRIQEGMDAQAKEQG 539
            DE D RAFW+ ++ TTG R ASWDTFSA FETY+RR +  EMS++ RA     EMVLRYAF RGS ARA+A  RV P  L LFL RFGPMRSCL+K +RSLFD+SGCL PWFHG +SRDEA RAI++WEAS G+G+ Q GVFLFRYS+       SF  +  +RR+++CL+ N G+ GY LP       W+DLREFV++ RR  F  PVPSALH EC +E+E R +  +++ TPE +IA AR LFG+A+ +VY+ D++ G E  ++++EALG++++V  ++ + E  +  PQL+AKALRL GDI WKL R ++G+ SY RCL+VVSEA+  Q A    SPVVT+SVLSHVH+LLA YFL  G   + L HF ELVACTTDEDAR+QLV++FRRN+ F+ AT  ++  SVQ +LDEGI+YFR +DY PAGV+FEK L DARCIGEG+ EARALGNLATV+YKT RIPAAIR+YRTCVQLLRQQG+Q TERKILNYLVMCCIE QRW PAKLFH+QLSKLAES+ N+  L RL+ RI+EGM  QA+++G
Sbjct:    4 DEADTRAFWDLMQRTTGARSASWDTFSATFETYLRRYYAAEMSQLPRATRAEAEMVLRYAFDRGSPARAAAGERVAPKHLALFLTRFGPMRSCLIKAARSLFDESGCLVPWFHGKLSRDEARRAIEEWEASRGNGREQRGVFLFRYSDWHSTICFSFRRKRGERRLVTCLINNEGSRGYTLPDTSGDGCWRDLREFVAEQRRGDFQQPVPSALHRECVEEIEARRRAEQFVPTPENQIAYARQLFGEAQTMVYSRDMKAGFEATRILQEALGLVEKVEHILLELEQGQGDPQLQAKALRLGGDILWKLHREEKGVASYLRCLNVVSEAEKVQGASDHGSPVVTISVLSHVHQLLAEYFLSRGSPGRGLDHFSELVACTTDEDARRQLVDDFRRNDGFQRATAGLTQSSVQEILDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQATERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQERIEEGMALQARQEG 550
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.605.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE26_9PHAE5.160e-22362.11SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LBM4_ECTSI1.660e-21761.24TPR domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000980SH2 domainSMARTSM00252SH2_5coord: 111..210
e-value: 0.0081
score: 23.9
IPR000980SH2 domainPROSITEPS50001SH2coord: 113..203
score: 10.449
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 290..323
e-value: 20.0
score: 12.3
coord: 441..474
e-value: 6.9
score: 15.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 230..525
e-value: 2.8E-18
score: 67.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 404..518
IPR036860SH2 domain superfamilyGENE3D3.30.505.10coord: 105..227
e-value: 6.9E-7
score: 30.8
IPR036860SH2 domain superfamilySUPERFAMILY55550SH2 domaincoord: 105..199

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:104386..137532 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.605.1mRNA_D-herbacea_F_contig106.605.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig106 104358..137747 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig106.605.1 ID=prot_D-herbacea_F_contig106.605.1|Name=mRNA_D-herbacea_F_contig106.605.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=571bp
MESSDETDVRAFWNHVRHTTGGRFASWDTFSAGFETYMRRRFPGEMSRVR
AFPPVEMVLRYAFGRGSKARASASARVTPNDLNLFLKRFGPMRSCLLKTS
RSLFDDSGCLAPWFHGMMSRDEAARAIDDWEASHGSGKQIGVFLFRYSNR
PEQPEISFSYRSTDRRMLSCLVLNNGAGGYVLPTAGQRRAWQDLREFVSD
RRQYFVHPVPSALHLECKQELEVREKEWMRTPEVKIADARHLFGDAKALV
YTDIEDGREPVQVMEEALGIIDEVVSLVRDSELDEPQLEAKALRLAGDIQ
WKLRRYDEGMVSYQRCLHVVSEAQDSQAAESPVVTVSVLSHVHRLLAGYF
LREGLTSKALYHFGELVACTTDEDARQQLVEEFRRNEEFRVATESISHES
VQAVLDEGITYFRRKDYEPAGVKFEKALCDARCIGEGKEEARALGNLATV
EYKTCRIPAAIRKYRTCVQLLRQQGDQVTERKILNYLVMCCIEDQRWEPA
KLFHKQLSKLAESDDNISHLRRLEVRIQEGMDAQAKEQGASLSRGNANGV
PTRTGYDRPPESFPKDSYGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036860SH2_dom_sf
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat
IPR000980SH2