mRNA_D-herbacea_F_contig106.605.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig106.605.1 vs. uniprot
Match: A0A6H5JE26_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE26_9PHAE) HSP 1 Score: 652 bits (1682), Expect = 9.600e-222 Identity = 341/549 (62.11%), Postives = 422/549 (76.87%), Query Frame = 3
Query: 228 DETDVRAFWNHVRHTTGGRFASWDTFSAGFETYMRRRFPGEMSRV-RAF-PPVEMVLRYAFGRGSKARASASARVTPNDLNLFLKRFGPMRSCLLKTSRSLFDDSGCLAPWFHGMMSRDEAARAIDDWEASHGSGK-QIGVFLFRYSNRPEQPEISFSYRSTDRRMLSCLVLNNGAGGYVLPTAGQRRAWQDLREFVSD-RRQYFVHPVPSALHLECKQELEVREK--EWMRTPEVKIADARHLFGDAKALVYT---DIEDGREPVQVMEEALGIIDEVVSLVRDSELDE--PQLEAKALRLAGDIQWKLRRYDEGMVSYQRCLHVVSEAQ---DSQAAESPVVTVSVLSHVHRLLAGYFLREGLTSKALYHFGELVACTTDEDARQQLVEEFRRNEEFRVATESISHESVQAVLDEGITYFRRKDYEPAGVKFEKALCDARCIGEGKEEARALGNLATVEYKTCRIPAAIRKYRTCVQLLRQQGDQVTERKILNYLVMCCIEDQRWEPAKLFHKQLSKLAESDDNISHLRRLEVRIQEGMDAQAKEQG 1832
DE D RAFW+ V+ TTG R ASWDTFSA FETY+RR + EMS++ RA EMVLRYAF RGS ARA+A RV P L LFL RFGPM+SCL+K +RSLFD+SGCL PWFHG +SR+EA RAI++WEAS G+G+ Q GVFLFRYS+ SF + +RR+++CL+ N G GY LP W+DLREFV++ RR F HPVPSALH EC +E+E R + +++ TPE +IA AR LFGDA+ +VY+ D++ G E +++E ALG++++V ++R+ E D+ PQL+AKALRL GDI WKL R +EG+ SY RCL VVSEA+ D+ SPVVT+SVLSH+H+LLA YFL G + L HF ELVACTTDEDARQQLV++FRRN+ FR AT ++ SVQ VLDEGI+YFR +DY PAGV+FEK L +ARCIGEG+ EARALGNLATV+YKT RIPAAIR+YRTCVQLLRQQG+QVTERKILNYLVMCCIE QRW PAKLFH+QLSKLAES++N+ HL RL+ RI+EGM QA+++G
Sbjct: 4 DEADTRAFWDLVQRTTGARSASWDTFSATFETYLRRHYAAEMSQLPRATRAEAEMVLRYAFDRGSPARAAAGERVAPKHLALFLTRFGPMKSCLIKAARSLFDESGCLVPWFHGKLSREEARRAIEEWEASRGNGREQRGVFLFRYSDWHSTICFSFRRKKGERRLVTCLINNEGRRGYTLPDTSGDGCWRDLREFVAEQRRGDFRHPVPSALHRECVEEIEARRRAEQFVPTPENQIAHARQLFGDAQTMVYSRDRDMKAGFEATRILEGALGLVEKVEHILRELEQDQGDPQLQAKALRLGGDILWKLHREEEGVASYLRCLSVVSEAEKVPDASHDGSPVVTISVLSHIHQLLAEYFLSRGWHERGLDHFSELVACTTDEDARQQLVDDFRRNDGFRRATAGLTQSSVQEVLDEGISYFRCQDYGPAGVRFEKVLRNARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQVTERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEENVLHLARLQERIEEGMALQARQEG 552
BLAST of mRNA_D-herbacea_F_contig106.605.1 vs. uniprot
Match: D8LBM4_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM4_ECTSI) HSP 1 Score: 639 bits (1649), Expect = 3.060e-216 Identity = 335/547 (61.24%), Postives = 419/547 (76.60%), Query Frame = 3
Query: 228 DETDVRAFWNHVRHTTGGRFASWDTFSAGFETYMRRRFPGEMSRV-RAF-PPVEMVLRYAFGRGSKARASASARVTPNDLNLFLKRFGPMRSCLLKTSRSLFDDSGCLAPWFHGMMSRDEAARAIDDWEASHGSGK-QIGVFLFRYSNRPEQPEISFSYRSTDRRMLSCLVLNNGAGGYVLPTAGQRRAWQDLREFVSD-RRQYFVHPVPSALHLECKQELEVREK--EWMRTPEVKIADARHLFGDAKALVYT-DIEDGREPVQVMEEALGIIDEVVSLVRDSELDE--PQLEAKALRLAGDIQWKLRRYDEGMVSYQRCLHVVSEAQDSQAAE---SPVVTVSVLSHVHRLLAGYFLREGLTSKALYHFGELVACTTDEDARQQLVEEFRRNEEFRVATESISHESVQAVLDEGITYFRRKDYEPAGVKFEKALCDARCIGEGKEEARALGNLATVEYKTCRIPAAIRKYRTCVQLLRQQGDQVTERKILNYLVMCCIEDQRWEPAKLFHKQLSKLAESDDNISHLRRLEVRIQEGMDAQAKEQG 1832
DE D RAFW+ ++ TTG R ASWDTFSA FETY+RR + EMS++ RA EMVLRYAF RGS ARA+A RV P L LFL RFGPMRSCL+K +RSLFD+SGCL PWFHG +SRDEA RAI++WEAS G+G+ Q GVFLFRYS+ SF + +RR+++CL+ N G+ GY LP W+DLREFV++ RR F PVPSALH EC +E+E R + +++ TPE +IA AR LFG+A+ +VY+ D++ G E ++++EALG++++V ++ + E + PQL+AKALRL GDI WKL R ++G+ SY RCL+VVSEA+ Q A SPVVT+SVLSHVH+LLA YFL G + L HF ELVACTTDEDAR+QLV++FRRN+ F+ AT ++ SVQ +LDEGI+YFR +DY PAGV+FEK L DARCIGEG+ EARALGNLATV+YKT RIPAAIR+YRTCVQLLRQQG+Q TERKILNYLVMCCIE QRW PAKLFH+QLSKLAES+ N+ L RL+ RI+EGM QA+++G
Sbjct: 4 DEADTRAFWDLMQRTTGARSASWDTFSATFETYLRRYYAAEMSQLPRATRAEAEMVLRYAFDRGSPARAAAGERVAPKHLALFLTRFGPMRSCLIKAARSLFDESGCLVPWFHGKLSRDEARRAIEEWEASRGNGREQRGVFLFRYSDWHSTICFSFRRKRGERRLVTCLINNEGSRGYTLPDTSGDGCWRDLREFVAEQRRGDFQQPVPSALHRECVEEIEARRRAEQFVPTPENQIAYARQLFGEAQTMVYSRDMKAGFEATRILQEALGLVEKVEHILLELEQGQGDPQLQAKALRLGGDILWKLHREEKGVASYLRCLNVVSEAEKVQGASDHGSPVVTISVLSHVHQLLAEYFLSRGSPGRGLDHFSELVACTTDEDARRQLVDDFRRNDGFQRATAGLTQSSVQEILDEGISYFRCQDYGPAGVRFEKVLRDARCIGEGRMEARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQATERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLGRLQERIEEGMALQARQEG 550 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig106.605.1 >prot_D-herbacea_F_contig106.605.1 ID=prot_D-herbacea_F_contig106.605.1|Name=mRNA_D-herbacea_F_contig106.605.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=571bp MESSDETDVRAFWNHVRHTTGGRFASWDTFSAGFETYMRRRFPGEMSRVRback to top mRNA from alignment at D-herbacea_F_contig106:104358..137747- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig106.605.1 ID=mRNA_D-herbacea_F_contig106.605.1|Name=mRNA_D-herbacea_F_contig106.605.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=33390bp|location=Sequence derived from alignment at D-herbacea_F_contig106:104358..137747- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig106:104358..137747- >mRNA_D-herbacea_F_contig106.605.1 ID=mRNA_D-herbacea_F_contig106.605.1|Name=mRNA_D-herbacea_F_contig106.605.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=3426bp|location=Sequence derived from alignment at D-herbacea_F_contig106:104358..137747- (Desmarestia herbacea DmunF female)back to top |