prot_D-herbacea_F_contig100.218.1 (polypeptide) Desmarestia herbacea DmunF female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-herbacea_F_contig100.218.1
Unique Nameprot_D-herbacea_F_contig100.218.1
Typepolypeptide
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Sequence length570
Homology
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BLAST of mRNA_D-herbacea_F_contig100.218.1 vs. uniprot
Match: D7FI06_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI06_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 9.500e-112
Identity = 255/547 (46.62%), Postives = 311/547 (56.86%), Query Frame = 0 
Query:   54 SSLSAVAIAHQRSNQRADALVEGVVTELRRLDC-AAVDG--SVAGDGGLISGVARTKVS-GAPAVTEGGNGXXXXXXXXXXXXXXVGDN----ETGVAEEEDEFVLAPFEGGGEMMAKM------------VASRAPAVDRSVGDGVDASSQDDSPHHKEGGAAKALGGGSMVTGEGGARSTCEVHLCLQFVERLCARAEEYSRRDALETWRPLEGTVRRLERDNEMLHQLLEPKYRILGAVPPPVPTWSGHTGYS---GSSPLMGTKAENQNRAGAGTDGSGRVVALLQSNPLFVVERAFVKARVVVPRGSIHAVVAASAAGGTGNERD---------PTDGRTATD---ARLHRLLARAVVKALAAAVGEVCEDREEEFLKHRIPGAQAYVAELEAYRSELVGGKPLRAVASFPDGKEEEAGEEEGGSSIDIDDDLWRIFGAMETRLYSSPAALGKKPGRIYLTFGTLWFHSKVLGFEARLVLPLAEVKSVVLLGTALDLSASLVVSTKVGE---EIMFVFPGQRTATLEPVELLIRQLASLAAE 562
            SSL+AV IA+ RSNQRAD+L++ VV EL R+    AVD     A     + G   TK S G+P   +                   GD     E   +  ++  VLAPF+G                    ++      +    +G     +D      EGG A A  G   V     A +  EV LCLQFVE LCARAEEYSR DA ETWRPL+ TV RLERDN  L  LLEPKYR +GA PPPVP WSG   +    GSS  +G+ A N      G   S RVV LL+S PLFV++   VKA+VV       +  AA+       +RD            G  A+D   +R H LL RA VKAL   VG VCE REE FLK R+PGAQAY  ELE Y S + GG  LRA AS P+     AG      S+++DDDLWR+F A ETRLYSS AALGKKPGR+Y+T+ TLWFHSKVLGFE+R VLPLAEV S+ LLGTALDLS+SLV++T  G    E+MF+FPGQ+   +EP+E+L+RQLA LAA+
Sbjct:  205 SSLTAVEIANVRSNQRADSLLQAVVAELGRVGWQGAVDRRTGTAATAAAVVGPRGTKPSPGSPGPEQ---------QKAAEKGEDAGDGARPGERAASMPQEVLVLAPFDGSNSSXXXXXXXXXXXXXXGPLSPEEEGREGEKAEGPPRQEEDQETGVPEGGVATAGAGADAVVAAAAA-TVVEVGLCLQFVEGLCARAEEYSRHDAAETWRPLQDTVSRLERDNATLRSLLEPKYRAVGAAPPPVPIWSGRRSFGETYGSS--VGSAATN-----VGNAPSKRVVELLRSTPLFVIDGKQVKAKVV-------STAAAAXXXXXXXKRDGERQIDGSSSATGSAASDLGGSRRHALLVRAAVKALTEVVGRVCESREEAFLKARLPGAQAYTVELERYGSTIAGGSALRATASSPERDWASAG------SVEVDDDLWRLFAAQETRLYSSSAALGKKPGRLYVTYSTLWFHSKVLGFESRHVLPLAEVVSITLLGTALDLSSSLVIATNSGGVPGELMFIFPGQKRRQVEPLEVLLRQLAVLAAK 721
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.218.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI06_ECTSI9.500e-11246.62GRAM domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Desmarestia herbacea DmunF female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004182GRAM domainPFAMPF02893GRAMcoord: 475..536
e-value: 3.3E-5
score: 23.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:378486..382664 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Desmarestia herbacea DmunF female2022-09-29
Diamond blastp: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-16
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.218.1mRNA_D-herbacea_F_contig100.218.1Desmarestia herbacea DmunF femalemRNAD-herbacea_F_contig100 378104..383587 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-herbacea_F_contig100.218.1 ID=prot_D-herbacea_F_contig100.218.1|Name=mRNA_D-herbacea_F_contig100.218.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=570bp
MTDPCPKQDLAGRSAAAVASFAERLRAGSVAAGLSSGTSGRDSASGGTSG
RTPSSLSAVAIAHQRSNQRADALVEGVVTELRRLDCAAVDGSVAGDGGLI
SGVARTKVSGAPAVTEGGNGGDGEDTTTTTATTTVGDNETGVAEEEDEFV
LAPFEGGGEMMAKMVASRAPAVDRSVGDGVDASSQDDSPHHKEGGAAKAL
GGGSMVTGEGGARSTCEVHLCLQFVERLCARAEEYSRRDALETWRPLEGT
VRRLERDNEMLHQLLEPKYRILGAVPPPVPTWSGHTGYSGSSPLMGTKAE
NQNRAGAGTDGSGRVVALLQSNPLFVVERAFVKARVVVPRGSIHAVVAAS
AAGGTGNERDPTDGRTATDARLHRLLARAVVKALAAAVGEVCEDREEEFL
KHRIPGAQAYVAELEAYRSELVGGKPLRAVASFPDGKEEEAGEEEGGSSI
DIDDDLWRIFGAMETRLYSSPAALGKKPGRIYLTFGTLWFHSKVLGFEAR
LVLPLAEVKSVVLLGTALDLSASLVVSTKVGEEIMFVFPGQRTATLEPVE
LLIRQLASLAAERGPGGYS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004182GRAM