mRNA_D-herbacea_F_contig100.218.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig100.218.1
Unique NamemRNA_D-herbacea_F_contig100.218.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig100.218.1 vs. uniprot
Match: D7FI06_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI06_ECTSI)

HSP 1 Score: 480 bits (1235), Expect = 6.770e-153
Identity = 342/733 (46.66%), Postives = 417/733 (56.89%), Query Frame = 2 
Query:   41 DSELWTTEHVQHTDLGRLHLRALEAILSPTTSSADIISAVAFGVTSQGLRVTHRDDAQGRIVAQRIEAPYLASFSGRNTRSAAGTE---WRVVVATLSVSKGVAAWGGVERVLLLEFMTDPCPKQ-DLAGRSAAAVASFAERLRAGSVAAGLSSGTSGRDSASGGTSGRTP---------------SSLSAVAIAHQRSNQRADALVEGVVTELRRLDC-AAVDG--SVAGDGGLISGVARTKVS-GAPAVTEGGNGXXXXXXXXXXXXXXVGDN----ETGVAEEEDEFVLAPFEGGGEMMAKM------------VASRAPAVDRSVGDGVDASSQDDSPHHKEGGAAKALGGGSMVTGEGGARSTCEVHLCLQFVERLCARAEEYSRRDALETWRPLEGTVRRLERDNEMLHQLLEPKYRILGAVPPPVPTWSGHTGYS---GSSPLMGTKAENQNRAGAGTDGSGRVVALLQSNPLFVVERAFVKARVVVPRGSIHAVVAASAAGGTGNERD---------PTDGRTATD---ARLHRLLARAVVKALAAAVGEVCEDREEEFLKHRIPGAQAYVAELEAYRSELVGGKPLRAVASFPDGKEEEAGEEEGGSSIDIDDDLWRIFGAMETRLYSSPAALGKKPGRIYLTFGTLWFHSKVLGFEARLVLPLAEVKSVVLLGTALDLSASLVVSTKVGE---EIMFVFPGQRTATLEPVELLIRQLASLAAE 2068
            +S LW T+ +QH DL RLHLR++E+IL PT S+  II AVA+ VTS GLRVT R+  QGRIVAQR+EAPYLAS S  + RS +G E   WR+VVA + VSKGV     VERVL + FMTDP PK  DLAG+ AAAV+S    +  GS+A                                     SSL+AV IA+ RSNQRAD+L++ VV EL R+    AVD     A     + G   TK S G+P   +                   GD     E   +  ++  VLAPF+G                    ++      +    +G     +D      EGG A A  G   V     A +  EV LCLQFVE LCARAEEYSR DA ETWRPL+ TV RLERDN  L  LLEPKYR +GA PPPVP WSG   +    GSS  +G+ A N      G   S RVV LL+S PLFV++   VKA+VV       +  AA+       +RD            G  A+D   +R H LL RA VKAL   VG VCE REE FLK R+PGAQAY  ELE Y S + GG  LRA AS P+     AG      S+++DDDLWR+F A ETRLYSS AALGKKPGR+Y+T+ TLWFHSKVLGFE+R VLPLAEV S+ LLGTALDLS+SLV++T  G    E+MF+FPGQ+   +EP+E+L+RQLA LAA+
Sbjct:   23 ESRLWETKRIQHADLNRLHLRSIESILDPTVSADSIIGAVAYAVTSHGLRVTQRE--QGRIVAQRVEAPYLASVSSGSWRSGSGQEREEWRMVVANVGVSKGVGEGKMVERVLSVSFMTDPVPKPTDLAGKGAAAVSSLLGSV--GSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLTAVEIANVRSNQRADSLLQAVVAELGRVGWQGAVDRRTGTAATAAAVVGPRGTKPSPGSPGPEQ---------QKAAEKGEDAGDGARPGERAASMPQEVLVLAPFDGSNSSXXXXXXXXXXXXXXGPLSPEEEGREGEKAEGPPRQEEDQETGVPEGGVATAGAGADAVVAAAAA-TVVEVGLCLQFVEGLCARAEEYSRHDAAETWRPLQDTVSRLERDNATLRSLLEPKYRAVGAAPPPVPIWSGRRSFGETYGSS--VGSAATN-----VGNAPSKRVVELLRSTPLFVIDGKQVKAKVV-------STAAAAXXXXXXXKRDGERQIDGSSSATGSAASDLGGSRRHALLVRAAVKALTEVVGRVCESREEAFLKARLPGAQAYTVELERYGSTIAGGSALRATASSPERDWASAG------SVEVDDDLWRLFAAQETRLYSSSAALGKKPGRLYVTYSTLWFHSKVLGFESRHVLPLAEVVSITLLGTALDLSSSLVIATNSGGVPGELMFIFPGQKRRQVEPLEVLLRQLAVLAAK 721
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig100.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI06_ECTSI6.770e-15346.66GRAM domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig100contigD-herbacea_F_contig100:378104..383587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_006590.1
Exons5
Model size3015
Cds size1710
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927413.7570524-UTR-D-herbacea_F_contig100:378103..3784851622927413.7570524-UTR-D-herbacea_F_contig100:378103..378485Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 378104..378485 +
1690790157.4876838-UTR-D-herbacea_F_contig100:378103..3784851690790157.4876838-UTR-D-herbacea_F_contig100:378103..378485Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 378104..378485 +
1622927413.8194854-UTR-D-herbacea_F_contig100:382664..3835871622927413.8194854-UTR-D-herbacea_F_contig100:382664..383587Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 382665..383587 +
1690790157.5485222-UTR-D-herbacea_F_contig100:382664..3835871690790157.5485222-UTR-D-herbacea_F_contig100:382664..383587Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig100 382665..383587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927413.7703125-CDS-D-herbacea_F_contig100:378485..3791361622927413.7703125-CDS-D-herbacea_F_contig100:378485..379136Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 378486..379136 +
1690790157.4973013-CDS-D-herbacea_F_contig100:378485..3791361690790157.4973013-CDS-D-herbacea_F_contig100:378485..379136Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 378486..379136 +
1622927413.7795146-CDS-D-herbacea_F_contig100:380781..3808911622927413.7795146-CDS-D-herbacea_F_contig100:380781..380891Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 380782..380891 +
1690790157.5067203-CDS-D-herbacea_F_contig100:380781..3808911690790157.5067203-CDS-D-herbacea_F_contig100:380781..380891Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 380782..380891 +
1622927413.7889736-CDS-D-herbacea_F_contig100:381270..3815301622927413.7889736-CDS-D-herbacea_F_contig100:381270..381530Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 381271..381530 +
1690790157.5184307-CDS-D-herbacea_F_contig100:381270..3815301690790157.5184307-CDS-D-herbacea_F_contig100:381270..381530Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 381271..381530 +
1622927413.8023012-CDS-D-herbacea_F_contig100:381674..3821321622927413.8023012-CDS-D-herbacea_F_contig100:381674..382132Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 381675..382132 +
1690790157.5278478-CDS-D-herbacea_F_contig100:381674..3821321690790157.5278478-CDS-D-herbacea_F_contig100:381674..382132Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 381675..382132 +
1622927413.8109937-CDS-D-herbacea_F_contig100:382433..3826641622927413.8109937-CDS-D-herbacea_F_contig100:382433..382664Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 382434..382664 +
1690790157.5367384-CDS-D-herbacea_F_contig100:382433..3826641690790157.5367384-CDS-D-herbacea_F_contig100:382433..382664Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig100 382434..382664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig100.218.1prot_D-herbacea_F_contig100.218.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig100 378486..382664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig100.218.1

>prot_D-herbacea_F_contig100.218.1 ID=prot_D-herbacea_F_contig100.218.1|Name=mRNA_D-herbacea_F_contig100.218.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=570bp
MTDPCPKQDLAGRSAAAVASFAERLRAGSVAAGLSSGTSGRDSASGGTSG
RTPSSLSAVAIAHQRSNQRADALVEGVVTELRRLDCAAVDGSVAGDGGLI
SGVARTKVSGAPAVTEGGNGGDGEDTTTTTATTTVGDNETGVAEEEDEFV
LAPFEGGGEMMAKMVASRAPAVDRSVGDGVDASSQDDSPHHKEGGAAKAL
GGGSMVTGEGGARSTCEVHLCLQFVERLCARAEEYSRRDALETWRPLEGT
VRRLERDNEMLHQLLEPKYRILGAVPPPVPTWSGHTGYSGSSPLMGTKAE
NQNRAGAGTDGSGRVVALLQSNPLFVVERAFVKARVVVPRGSIHAVVAAS
AAGGTGNERDPTDGRTATDARLHRLLARAVVKALAAAVGEVCEDREEEFL
KHRIPGAQAYVAELEAYRSELVGGKPLRAVASFPDGKEEEAGEEEGGSSI
DIDDDLWRIFGAMETRLYSSPAALGKKPGRIYLTFGTLWFHSKVLGFEAR
LVLPLAEVKSVVLLGTALDLSASLVVSTKVGEEIMFVFPGQRTATLEPVE
LLIRQLASLAAERGPGGYS*
back to top

mRNA from alignment at D-herbacea_F_contig100:378104..383587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig100.218.1 ID=mRNA_D-herbacea_F_contig100.218.1|Name=mRNA_D-herbacea_F_contig100.218.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5484bp|location=Sequence derived from alignment at D-herbacea_F_contig100:378104..383587+ (Desmarestia herbacea DmunF female)
GCTAAAGGATGTATCCCTTAGTGACGGACACCGACCGAAGGACTCTGAGC
TGTGGACAACAGAACATGTCCAACACACAGACCTCGGCAGGCTACACCTC
CGCGCGCTTGAGGCCATCCTCAGCCCCACGACCAGCTCCGCGGACATCAT
CAGTGCTGTCGCTTTCGGGGTCACCAGTCAAGGTCTCAGAGTCACCCACA
GAGACGACGCGCAGGGGCGTATCGTGGCCCAGCGAATAGAAGCGCCGTAT
TTGGCGAGCTTCTCGGGGAGGAACACTCGTTCCGCAGCCGGGACGGAGTG
GCGCGTGGTAGTGGCCACTCTCAGCGTTTCTAAAGGAGTCGCTGCGTGGG
GAGGAGTCGAGCGCGTACTCCTGCTAGAGTTCATGACAGATCCTTGTCCG
AAACAGGACTTGGCCGGGAGAAGCGCGGCCGCGGTCGCCTCGTTCGCCGA
GCGGCTTCGAGCTGGTTCGGTCGCCGCTGGGCTGAGCTCTGGCACGAGCG
GGAGGGATAGCGCTAGCGGCGGTACCTCGGGCAGAACCCCTTCCTCTCTC
TCCGCTGTCGCCATCGCGCACCAGAGGAGCAACCAAAGGGCGGATGCGCT
TGTGGAAGGGGTGGTCACGGAGCTCCGTCGACTTGATTGTGCGGCAGTTG
ACGGGAGCGTCGCAGGCGATGGTGGACTGATTAGCGGCGTTGCCCGCACG
AAAGTTAGCGGGGCGCCGGCAGTGACGGAAGGGGGCAATGGTGGCGATGG
TGAGGATACTACTACCACTACTGCCACTACTACTGTGGGGGACAATGAAA
CTGGAGTTGCCGAAGAAGAGGATGAGTTTGTGCTTGCGCCGTTTGAGGGC
GGCGGGGAGATGATGGCGAAGATGGTAGCTTCTCGTGCTCCGGCTGTGGA
TCGTAGTGTGGGAGATGGAGTTGACGCGAGCTCGCAGGACGACTCACCGC
ACCATAAGGAGGGAGGAGCCGCGAAGGCGTTGGGTGGTGGGTCGATGGTG
ACCGGCGAAGGTGGTGCCCGTTCTACGTGTGAGGTGCGAATCCTCTACGG
CATTATACGTCTACGTGTGCATTTCCGGAAGTGCACACCATTGATCGTGG
CACTTCAGACAGCACACAAAACCCGCGACATGCTTTAATCGTTCTTTTTT
CGGCGCCCGTGTATTCTTGTATTCTTCCTCAGTTATGTATACTAATTCGA
AGTATGTATGTACTCGTATGGGGACTGTTGCAATCTGGGGATCCTGTTCA
GTTAGGGACGCCATGGATCTTGTTCTGTTTTTCTTTTTTCAATAATGCTT
CCCATGCTTATACTAATAAGCATTTGTATCGCATCAACCTGTGGCCTGTA
GCTATTGGTATTCTGTACTGTATAGCTACTGTAAGGCATCCTCGTACTGC
CTCTTTTTTACTACAAGTATGGTTACGCACGCGTCAACGGGCACACATTT
AACGCGTGCATGTAAAGGGGTGGCCCAGTGGTCTAATGGCTAGGGTATTT
CCTCTGTTGGCGGAAGTTGGGGGTTCGATTCCCGGTGGCACTTTTCTGTG
TCATTTTCCGTCGCGGAAAACGCAAGAAGAGCGTGAGTAAGCACAATTCG
ATGCAAGTCGACGAGGGAAGAAAGTGCTGCATTCTTCTCGCGATAAAAAT
GTAGGCACGTACCGTAGTGGGAAGGAGAAAGGAGGGCCTACTATGTGACC
CCGGATCTGAGTTACGAAGAGAGATGGAGCTAGAGAAAGACTGGGGCGAA
GATAATAAATGGGACGGGAAAAAAAAAAAAAAAATGTAATGTAATGTAAT
GCTCCCGCTGGTGCTTAGGGCTGATGCTGCAGTAGACTTGACAACGTGTT
CGGGGGCTGATTCCATCTTTTTTTTACTTGCTGTTATTATGGTGTGGTCA
TTGGTCATTAGGTTAGGGTTAGGGTTATACTAAAGGTTCCGAACTGCTGC
TCAACAGCCCACATGGTAGTCTATTACAGTACTCTTAGTACAATAAACCG
ACACCCTAAATCCTACGCACAACACACCCGGAACAAATTGAAAAGTAGGC
TCGATACTGACATGTAGACTATAGCTCTAGCTCTACGAATCGTATGTATC
CAACAAGGAGGTTGGACCGACTTGGTGTTTTCGTTGTGCCTCCCGAGATC
CTGATAGGCCCTGAGGGTGTATTTTGAGTTTTGACGCTCGCCTGTAACCC
TCCCGCTGGTGTACAGGGCTGATACTAACACCTGTAGCTCTACAAATCGT
TGTCTTCAACGGGGCTGGACCGACTTTGCGTTTCCGTTGCGCCTGTCGAG
ATCCTCTCCTGATAGGTCTTGAGGGTGTATGTGTGGCATTGACTGACGCT
CATCGCTCTTACTATCATAAAAAAAGTATTTCACTCCGAACTGCGTTTCC
ACTTTCGAAGCGGGCACCCCTAAATGCTGGCGTTCGGGCAATAATGACGA
ATATGTGAAAAGCATACACGTAGAGGATCCATACCTACCTTCCACATAGC
ACCGGGTAGGCCGAGTGGGTGATGGCTGGAGAGTACTGTAAGGGCACCGA
GTGGAAGTGCGCGCGAAAACGCAAAATCAACGTACAATCGTATAATCAAG
TACAGTAGGGGTAAGGTTTAACGCGTCCTCTCCATATTCATGTGTTGATG
CCGCTTGTCGATTATCGGCGTTTCACAGGTGCACCTGTGCTTGCAGTTTG
TGGAGCGACTCTGCGCACGGGCGGAGGAGTATAGCAGGCGGGACGCACTC
GAAACGTGGCGGCCGCTCGAGGGCACCGTTCGCAGACTGTGAGACGGCGT
GGTGAATTGGTTTTTCGTTGCTCAAAATGGGGTCAGTTGCGTTGCCTGCA
CTGCTGCGGTTTGTCCTTCCGGAAGTTGCTGAGAGCGCGTTTTTGTCCCT
TCTCCGCTTGAACAACTTCAAGCTTGCTGCGATTGTGCAAGCAAATGGAG
CGTGTGTCCGGAGTTCGCTGATGGTTAATCGTCCATGCTATCTTTTCAGA
TATATATCGGCACGGGAAAAAAGTGTGTCCCATTCGTGCACGCCAACCTC
CACAACAATACCGTGTTTCGCACGCGCAGCCATCTCTGCGTGCGTATTTT
TCGTTCACCCTCGTATCGCCGTATGTATGCCGTTGCGTCCTTCCTCACTT
GTACCTGTCTATCCCAGGGAGCGAGACAACGAAATGCTCCACCAATTGTT
AGAGCCCAAGTATCGGATTCTGGGTGCGGTACCTCCACCTGTACCGACCT
GGTCCGGACATACAGGGTACAGTGGATCGTCGCCGTTGATGGGAACGAAG
GCTGAAAACCAAAACCGCGCCGGCGCCGGCACCGACGGAAGCGGGCGTGT
CGTCGCCCTCTTGCAGTCGAATCCTCTCTTCGTCGTAGAAAGAGCTTTCG
TGAAAGCGAGGGTAGTCGTTCCGCGCGGTAGCGGCACCAGCCACGAACAG
GGAGGAGTCGCTAGCAAACATTCTCCCGCGTCGACGGGGACAAGCACCGC
GGCAGACACAGCCAGTGCAGCCGGTGGCAGCTCTGCTTCCGAGAACGCTT
CCCCTTCGGCAGCACTCCCAGGCTCGATCCACGCTGTCGTCGCTGCAAGT
GCCGCCGGCGGCACAGGTAACGAGCGCGATCCGACGGATGGCCGCACCGC
AACCGATGCGAGGTTACATCGGTTGTTAGCCCGAGCGGTCGTCAAGGCCC
TCGCGGCGGCGGTGGGTGAAGTGTGCGAAGATCGGGAAGAGGAATTCCTG
AAGCATCGCATCCCTGGGGCGCAGGCATACGTGGCCGAGCTGGAGGCGTA
CCGGTCGGAACTCGTGGGGGGCAAGCCTTTACGGGCTGTGGCTTCATTTC
CCGACGGCAAGGAAGAAGAGGCAGGAGAAGAAGAAGGTGGATCCAGTATC
GATATTGATGACGACCTGTGGCGGATTTTCGGGGCGATGGAGACGCGCCT
GTACAGCTCGCCTGCAGCGTTGGGGAAGAAACCGGGGCGGATTTACTTGA
CCTTCGGCACACTCTGGTTTCATTCAAAGGTGGGTGCGAAACAGGATGTT
ACGCAACAATGCCGTGTCGGTGTGGTTTGCCCTTTGGGGTTGTGCACAGT
ACTCTGTGCGTGTGTTGCAGAAAATTCCGGCAGAGAAACTGGAGTGTTGG
GAGGTTGTTGGACAGCATGAGTCTGTGTGTTTCTCGCGTGCGAAAAACAC
ACACACTTACACACACAATTCGGTGTGCTAGGTGTTTTGGTTTTCTGCGA
ACAATCTGAACGGAACAATCGCTACCACTGTTGTCATGCTTCCGCCACGT
GTACTTCGTCTCTTTTTGACACAATGACAGGTGCTAGGGTTTGAAGCTAG
GCTTGTACTGCCGCTAGCCGAAGTGAAATCTGTCGTGCTACTCGGCACCG
CGCTTGACCTATCCGCTAGCCTGGTTGTGTCTACCAAGGTTGGGGAGGAA
ATTATGTTTGTTTTTCCGGGACAACGCACGGCGACGCTTGAGCCCGTGGA
ACTGCTAATTCGACAGCTGGCGAGCCTTGCCGCGGAAAGGGGACCAGGGG
GCTACTCGTGAGCAAATATAACCACTGTAGGGTCAGTCTAACGCAAATCA
CGTGCAGTCTCGAGAGCGTGCACTACAAGAACTAGTTTCAAGGCAAGCGC
TATTAACTTTGAAGATCGGGGAACGCGTTCCTTCGAGAGAGTACAAGAGA
GGCACCTCGTGAGAACCAAATGGTCGTGCCGCTAGAACATGTGCTCATTC
GACGGTCATAGTGTTGCTTTTATCCCCGGCCCCCTGACCCCCAGGAGGGC
GGGTGCAAATCCTCGCGTTGATAACGATTTGGTCGCCCCACGGTGGAAAA
CTAAATTATTGAAGTTGGCTCAGGCTGGGTTTGGGATTATGGGGTTTGCC
GAGTGCCTCTATGATAGCGCCTCCGGGGAAACACACTCGATCAGCCGAGA
TTTTTGTTTTGTGCTGTTTTTTAGTTTGGGCCTATAACCCATTTCCGTGT
TGCAACGGAGTAGCCACTCCGTGTAGACTGTACTCGATACGGTAGCAGGC
TGCGTGGGTGAAGGGCAATGTGCAGTGTCGATTGCCGGTACTGGGACCGC
GGCACATGCATTTCAATCCGACAAGAGCAAAATTACAACTTGCGGGGTGC
CCCGATAATGTGTTTTTGTTTTGCTTTGTTTTGTTTTTTTGTTTTTTGTA
GCTTCACTTCGTGGATGTATGTTGTCACACAAACAGAACGCCTTCCTGGT
GCGACATGACGTCGTTGTTCCGGCGCAAACGTGCGGGTGCGTCGATCTAC
AGTGGGCATATTTCGTGCGCGTGTTTTTTTTTTATGGAAAATATTTTGAT
TGGTATGACATATTTTGACCGTTACGGCATGCTCAAGTAGGTAAGGGGAA
GTTCAGTCACATTTTTCTTATCGCGTAATCTGTTGCTGTTCCTACGTTGA
CAGGAATGTACGCCGTACAAGTATTCTGGAGATG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig100:378104..383587+

>mRNA_D-herbacea_F_contig100.218.1 ID=mRNA_D-herbacea_F_contig100.218.1|Name=mRNA_D-herbacea_F_contig100.218.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=3420bp|location=Sequence derived from alignment at D-herbacea_F_contig100:378104..383587+ (Desmarestia herbacea DmunF female)
ATGACAGATCCTTGTCCGAAACAGGACTTGGCCGGGAGAAGCGCGGCCGC
GGTCGCCTCGTTCGCCGAGCGGCTTCGAGCTGGTTCGGTCGCCGCTGGGC
TGAGCTCTGGCACGAGCGGGAGGGATAGCGCTAGCGGCGGTACCTCGGGC
AGAACCCCTTCCTCTCTCTCCGCTGTCGCCATCGCGCACCAGAGGAGCAA
CCAAAGGGCGGATGCGCTTGTGGAAGGGGTGGTCACGGAGCTCCGTCGAC
TTGATTGTGCGGCAGTTGACGGGAGCGTCGCAGGCGATGGTGGACTGATT
AGCGGCGTTGCCCGCACGAAAGTTAGCGGGGCGCCGGCAGTGACGGAAGG
GGGCAATGGTGGCGATGGTGAGGATACTACTACCACTACTGCCACTACTA
CTGTGGGGGACAATGAAACTGGAGTTGCCGAAGAAGAGGATGAGTTTGTG
CTTGCGCCGTTTGAGGGCGGCGGGGAGATGATGGCGAAGATGGTAGCTTC
TCGTGCTCCGGCTGTGGATCGTAGTGTGGGAGATGGAGTTGACGCGAGCT
CGCAGGACGACTCACCGCACCATAAGGAGGGAGGAGCCGCGAAGGCGTTG
GGTGGTGGGTCGATGGTGACCGGCGAAGGTGGTGCCCGTTCTACGTGTGA
GATGACAGATCCTTGTCCGAAACAGGACTTGGCCGGGAGAAGCGCGGCCG
CGGTCGCCTCGTTCGCCGAGCGGCTTCGAGCTGGTTCGGTCGCCGCTGGG
CTGAGCTCTGGCACGAGCGGGAGGGATAGCGCTAGCGGCGGTACCTCGGG
CAGAACCCCTTCCTCTCTCTCCGCTGTCGCCATCGCGCACCAGAGGAGCA
ACCAAAGGGCGGATGCGCTTGTGGAAGGGGTGGTCACGGAGCTCCGTCGA
CTTGATTGTGCGGCAGTTGACGGGAGCGTCGCAGGCGATGGTGGACTGAT
TAGCGGCGTTGCCCGCACGAAAGTTAGCGGGGCGCCGGCAGTGACGGAAG
GGGGCAATGGTGGCGATGGTGAGGATACTACTACCACTACTGCCACTACT
ACTGTGGGGGACAATGAAACTGGAGTTGCCGAAGAAGAGGATGAGTTTGT
GCTTGCGCCGTTTGAGGGCGGCGGGGAGATGATGGCGAAGATGGTAGCTT
CTCGTGCTCCGGCTGTGGATCGTAGTGTGGGAGATGGAGTTGACGCGAGC
TCGCAGGACGACTCACCGCACCATAAGGAGGGAGGAGCCGCGAAGGCGTT
GGGTGGTGGGTCGATGGTGACCGGCGAAGGTGGTGCCCGTTCTACGTGTG
AGGTGCACCTGTGCTTGCAGTTTGTGGAGCGACTCTGCGCACGGGCGGAG
GAGTATAGCAGGCGGGACGCACTCGAAACGTGGCGGCCGCTCGAGGGCAC
CGTTCGCAGACTGTGCACCTGTGCTTGCAGTTTGTGGAGCGACTCTGCGC
ACGGGCGGAGGAGTATAGCAGGCGGGACGCACTCGAAACGTGGCGGCCGC
TCGAGGGCACCGTTCGCAGACTGGAGCGAGACAACGAAATGCTCCACCAA
TTGTTAGAGCCCAAGTATCGGATTCTGGGTGCGGTACCTCCACCTGTACC
GACCTGGTCCGGACATACAGGGTACAGTGGATCGTCGCCGTTGATGGGAA
CGAAGGCTGAAAACCAAAACCGCGCCGGCGCCGGCACCGACGGAAGCGGG
CGTGTCGTCGCCCTCTTGCAGTCGAATCCTCTCTTCGTCGTAGAAAGAGC
TTTCGTGAAAGCGAGGGTAGTCGTTCCGCGCGGGAGCGAGACAACGAAAT
GCTCCACCAATTGTTAGAGCCCAAGTATCGGATTCTGGGTGCGGTACCTC
CACCTGTACCGACCTGGTCCGGACATACAGGGTACAGTGGATCGTCGCCG
TTGATGGGAACGAAGGCTGAAAACCAAAACCGCGCCGGCGCCGGCACCGA
CGGAAGCGGGCGTGTCGTCGCCCTCTTGCAGTCGAATCCTCTCTTCGTCG
TAGAAAGAGCTTTCGTGAAAGCGAGGGTAGTCGTTCCGCGCGGCTCGATC
CACGCTGTCGTCGCTGCAAGTGCCGCCGGCGGCACAGGTAACGAGCGCGA
TCCGACGGATGGCCGCACCGCAACCGATGCGAGGTTACATCGGTTGTTAG
CCCGAGCGGTCGTCAAGGCCCTCGCGGCGGCGGTGGGTGAAGTGTGCGAA
GATCGGGAAGAGGAATTCCTGAAGCATCGCATCCCTGGGGCGCAGGCATA
CGTGGCCGAGCTGGAGGCGTACCGGTCGGAACTCGTGGGGGGCAAGCCTT
TACGGGCTGTGGCTTCATTTCCCGACGGCAAGGAAGAAGAGGCAGGAGAA
GAAGAAGGTGGATCCAGTATCGATATTGATGACGACCTGTGGCGGATTTT
CGGGGCGATGGAGACGCGCCTGTACAGCTCGCCTGCAGCGTTGGGGAAGA
AACCGGGGCGGATTTACTTGACCTTCGGCACACTCTGGTTTCATTCAAAG
GCTCGATCCACGCTGTCGTCGCTGCAAGTGCCGCCGGCGGCACAGGTAAC
GAGCGCGATCCGACGGATGGCCGCACCGCAACCGATGCGAGGTTACATCG
GTTGTTAGCCCGAGCGGTCGTCAAGGCCCTCGCGGCGGCGGTGGGTGAAG
TGTGCGAAGATCGGGAAGAGGAATTCCTGAAGCATCGCATCCCTGGGGCG
CAGGCATACGTGGCCGAGCTGGAGGCGTACCGGTCGGAACTCGTGGGGGG
CAAGCCTTTACGGGCTGTGGCTTCATTTCCCGACGGCAAGGAAGAAGAGG
CAGGAGAAGAAGAAGGTGGATCCAGTATCGATATTGATGACGACCTGTGG
CGGATTTTCGGGGCGATGGAGACGCGCCTGTACAGCTCGCCTGCAGCGTT
GGGGAAGAAACCGGGGCGGATTTACTTGACCTTCGGCACACTCTGGTTTC
ATTCAAAGGTGCTAGGGTTTGAAGCTAGGCTTGTACTGCCGCTAGCCGAA
GTGAAATCTGTCGTGCTACTCGGCACCGCGCTTGACCTATCCGCTAGCCT
GGTTGTGTCTACCAAGGTTGGGGAGGAAATTATGTTTGTTTTTCCGGGAC
AACGCACGGCGACGCTTGAGCCCGTGGAACTGCTAATTCGACAGCTGGCG
AGCCTTGCCGCGGAAAGGGGACCAGGGGGCTACTCGTGAGTGCTAGGGTT
TGAAGCTAGGCTTGTACTGCCGCTAGCCGAAGTGAAATCTGTCGTGCTAC
TCGGCACCGCGCTTGACCTATCCGCTAGCCTGGTTGTGTCTACCAAGGTT
GGGGAGGAAATTATGTTTGTTTTTCCGGGACAACGCACGGCGACGCTTGA
GCCCGTGGAACTGCTAATTCGACAGCTGGCGAGCCTTGCCGCGGAAAGGG
GACCAGGGGGCTACTCGTGA
back to top