mRNA_D-herbacea_F_contig111.956.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig111.956.1
Unique NamemRNA_D-herbacea_F_contig111.956.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.220e-109
Identity = 160/216 (74.07%), Postives = 181/216 (83.80%), Query Frame = 1
Query:    1 MKISWCAATGLG-AVVLVASPAAEGQVVTQQQQITMFNTEDFTFNLGGPEPDNLVDGFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEMLYTIEGEKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPATFLAALNSEDPGAVTITTRFFELPSEAIQASLNFDDPQIKALIAALPEAPATARRECLARCGMSD 645
            MK S+C+A GL  A   ++S A    VVT QQQITMFN EDF F LGGPEPD  VDGFQ+R  TLGQ+P+L+GQGI+MAL NLD C INLPH+HPRATEM Y I GE +RVAFVEENGGEGAVVNDLSQGDV FFPQGLIHY QNLGCEP TFLAALN++DPGAVTITTRFFELPSEAIQASLNF+DP ++ LI +LP+APA ARR+CL RCG++D
Sbjct:    1 MKTSFCSAAGLVVAAGFMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPSEAIQASLNFEDPALQRLIESLPDAPAAARRQCLERCGLAD 216          
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 9.950e-106
Identity = 153/215 (71.16%), Postives = 180/215 (83.72%), Query Frame = 1
Query:    1 MKISWCAATGLGAVVLVASPAAEGQVVTQQQQITMFNTEDFTFNLGGPEPDNLVDGFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEMLYTIEGEKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPATFLAALNSEDPGAVTITTRFFELPSEAIQASLNFDDPQIKALIAALPEAPATARRECLARCGMSD 645
            MK S+CAA G      + S      VVT QQQIT++N EDF F+LGGPEPD LVDGFQLR   + QLP+L+GQGISM L NLDPCAINLPH+HPRATEM+Y I+GE++RVAFVEENGGEGAVVNDL+QGDVAFFPQGLIHY QNL CEPATFLAALN+EDPGA+TITTRFFELP EAIQAS+NF++P ++ LI +LP+APA AR++CL RC M++
Sbjct:    1 MKTSFCAAAGFVIAAGLMSAVQVCGVVTVQQQITLYNPEDFVFSLGGPEPDALVDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATEMVYVIKGEQLRVAFVEENGGEGAVVNDLAQGDVAFFPQGLIHYQQNLDCEPATFLAALNNEDPGAITITTRFFELPLEAIQASVNFEEPVLQNLIESLPDAPAAARQQCLQRCRMAE 215          
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Match: A0A507FDZ0_9FUNG (Cupin type-1 domain-containing protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FDZ0_9FUNG)

HSP 1 Score: 176 bits (447), Expect = 7.690e-52
Identity = 96/187 (51.34%), Postives = 122/187 (65.24%), Query Frame = 1
Query:   82 TQQQQITMFNTEDF-TFNLGGPEPDNLVDGFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEMLYTIEGEKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPATFLAALNSEDPGAVTITTRFFELPSEAIQASLNFD-DPQIKALIAALPEAPATARRECLARCG 636
            T+ Q++  FN EDF T  L  P+   +  G  L  + LG +P+L  QG++M L NL+PC  NLPHVHPRA+E +Y I+G  V+V F+EENG +  +VNDL QG   F PQG IHY  NLGCE A  +AA N+EDPG +TI  +FF+LP  AI ASL    DP+I+AL  +LP  PA    ECL RCG
Sbjct:   37 TEVQRMKQFNHEDFITDLLHNPKSTEVGKGGSLAKMNLGSMPALARQGLAMVLINLNPCGANLPHVHPRASEAIYVIQGN-VQVGFIEENGAK-VIVNDLVQGQATFIPQGSIHYQVNLGCEQAVMIAANNNEDPGTLTIPAQFFKLPDGAIAASLGGTLDPEIRALNGSLPMNPAPGVEECLRRCG 221          
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Match: A0A433DF28_9FUNG (RmlC-like cupin n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DF28_9FUNG)

HSP 1 Score: 150 bits (380), Expect = 6.040e-42
Identity = 82/190 (43.16%), Postives = 115/190 (60.53%), Query Frame = 1
Query:   79 VTQQQQITMFNTEDFTFN-LGGPEPDNLVDGFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEMLYTIEGEKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPATFLAALNSEDPGAVTITTRFFE-LPSEAIQASLN-FDDPQIKALIAALPEAPATARRECLARCGM 639
            +T+ Q++++ + +DF FN L      ++ DG +    T    P+L G  I+M +G + PC+INLPH+HPRATE+ +  +G K    F EENG    +VN L +G+V  FP G IH+ QNL CEPA F+AA NSEDPG  TI + F   LP++ + ASL      Q+K L   LP+ PA   +EC  RCG+
Sbjct:   46 ITETQRLSLLDNKDFVFNFLTSKTGVSMGDGGRTVAATAANFPALIGHNIAMTVGFIGPCSINLPHIHPRATEINFIAQG-KFEAGFFEENGAR-FIVNTLHKGEVTVFPMGAIHFEQNLNCEPAVFVAAFNSEDPGVSTIGSNFIGGLPADIVSASLRGLSIEQVKELTKYLPKNPAIGIQECRKRCGL 233          
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Match: A0A0L0FR85_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FR85_9EUKA)

HSP 1 Score: 149 bits (377), Expect = 7.370e-41
Identity = 79/181 (43.65%), Postives = 111/181 (61.33%), Query Frame = 1
Query:  106 FNTEDFTFNLGGPEP---DNLVDGFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEMLYTIEGEKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPATFLAALNSEDPGAVTITTRFFELPSEAIQASLNFDDPQIKALIAALPEAPATARRECLARCGM 639
            F+ EDF F+         D+L  G  ++ V L + P ++  G+S +  ++ PC INLPHVHPRATE LY IEG+ V + FV     +  ++NDL +  V FFP+G +HY QN+ CE A F++ L++EDPG + +++    LP EA+ A+ N D   I  L   LPE PA AR ECLARCG+
Sbjct:  105 FDNEDFVFDFTDSNKVTVDSLGLGGNIQPVNLEEFPIMQLAGMSYSRFSIGPCGINLPHVHPRATESLYMIEGQ-VTLGFVSTE--DRLIMNDLEKDQVTFFPKGHLHYQQNMNCENAEFISILDNEDPGVLVVSSALLSLPDEALTATFNEDQALIAQLRLGLPEGPARARSECLARCGL 282          
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Match: A0A0G4EJ88_VITBC (Cupin type-1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJ88_VITBC)

HSP 1 Score: 150 bits (379), Expect = 7.950e-41
Identity = 80/175 (45.71%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  121 FTFNLGGPEPDNLVDGFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEMLYTIEGEKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPATFLAALNSEDPGAVTITTRFFELPSEAIQASLNFDDPQIKALIAALPEAPATA--RRECLARCGM 639
            F FN    E D    G  +   ++ Q P+L G G+S  L +L PC+IN PHVHPRATE++Y I+G +V V F EENGG   V ND+ +GD AFFP  LIH+  N  CEPA F+A LNS+D G  TI   FF LP + +  +L  D+ ++  L   LP  PA    R EC  +CG+
Sbjct:  147 FDFNTARAEADTNGQGGAVTGASVSQWPALSGHGLSHTLVDLAPCSINTPHVHPRATEIIYIIKG-RVSVGFAEENGGR-IVTNDVKEGDTAFFPHTLIHWQFNPTCEPAQFIATLNSDDGGVQTIAQAFFGLPDDVLATALGVDEYEVAVLREELPAGPALGLQREECRRKCGL 319          
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Match: A0A835Z488_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z488_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.740e-40
Identity = 82/185 (44.32%), Postives = 105/185 (56.76%), Query Frame = 1
Query:  109 NTEDFTFNLGGPEPDNLVDGFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEMLYTIEG--EKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPATFLAALNSEDPGAVTITTRFF------ELPSEAIQASLNFDDPQIKALIAALPEAPATARRECLARCGM 639
            N EDFTFN+   +      G   + ++  QLPSL G+ ++M    L PC INLPHVHPRATE+LY I+   E V  AFVEENGG   + N +  G+ AFFPQGL H   N+GC PAT +AAL S+D G  TIT+         E   E + A+L     Q+  L+   P+ PA    EC  RCG+
Sbjct:   58 NNEDFTFNIDASKATTGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLQPCGINLPHVHPRATEILYVIDAPAEGVLTAFVEENGGR-TIENTIVTGEAAFFPQGLTHVQVNMGCAPATMIAALGSDDFGVQTITSAALKGLAAAEGLGEGLAAALGIAQDQLALLVGGFPDGPAIGAAECRQRCGL 241          
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Match: A0A835YZF9_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF9_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.350e-40
Identity = 81/182 (44.51%), Postives = 104/182 (57.14%), Query Frame = 1
Query:  118 DFTFNLGGPEPDNLVDGFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEMLYTIEG--EKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPATFLAALNSEDPGAVTITTRFFELPS------EAIQASLNFDDPQIKALIAALPEAPATARRECLARCGM 639
            DF F+L G        G   + ++  QLPSL G+ ++M    L+PC INLPHVHPRATE+LY ++   E V  AFVEENGG   + N +  G+ AFFPQGL H   N+GC PAT +AAL S+D G  TITT   E  +      E + A+L     Q+  LI   P+ PA    EC  RCG+
Sbjct:    9 DFKFDLAGSTATAGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEILYVVDAAAEGVLTAFVEENGGR-TIENTVVAGEAAFFPQGLTHMQVNMGCTPATMIAALGSDDFGVQTITTTALEGLAGAEGLGEGLAAALGISQDQLAVLIGGFPDGPAIGAAECRQRCGL 189          
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Match: A0A836CNU2_9STRA (RmlC-like cupin domain-containing protein n=7 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNU2_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.750e-39
Identity = 80/182 (43.96%), Postives = 105/182 (57.69%), Query Frame = 1
Query:  118 DFTFNLGGPEPDNLVDGFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEMLYTIEG--EKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPATFLAALNSEDPGAVTITTRFFELPS------EAIQASLNFDDPQIKALIAALPEAPATARRECLARCGM 639
            DF F+L G +      G   + ++  QLPSL G+ ++M    L+PC INLPHVHPRATE+LY ++   E V  AFVEENGG   + N +  G+ AFFPQGL H   N+GC PAT +AAL S+D G  TITT   +  +      E + A+L     Q+  LI   P+ PA    EC  RCG+
Sbjct:   60 DFKFDLDGSKATTGNGGGSAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEILYVVDAAAEGVLTAFVEENGGR-TIENTIVTGEAAFFPQGLTHVQVNMGCTPATMIAALGSDDFGVQTITTTALKGLAGADGLGEGLAAALGISQDQLAVLIGGFPDGPAIGAAECRQRCGL 240          
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Match: A0A0L0GAB9_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAB9_9EUKA)

HSP 1 Score: 142 bits (357), Expect = 8.280e-39
Identity = 78/194 (40.21%), Postives = 107/194 (55.15%), Query Frame = 1
Query:   70 GQVVTQQQQITMFNTEDFTFNLGGPEPDNLVD----GFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEMLYTIEGEKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPATFLAALNSEDPGAVTITTRFFELPSEAIQASLNFDDPQIKALIAALPEAPATARRECLARCGM 639
            G  V+  + +  F+ EDF F+    E    VD    G   +   +   P ++   ++     + PC INLPHVHPR TE  Y IEGE + V FV E+G    V+ND+      FFPQGL+HY QN+GCEPA F++ L+S DPG + I      LP EAI A+ + D+  +  +   LP+ PA  R ECL RCG+
Sbjct:   10 GAQVSALRYMDNFDAEDFVFDFSDFETGVRVDSDGNGGSSQPANINTFPVVQVANMAQTRFRIAPCGINLPHVHPRGTESAYMIEGE-LTVGFVMESGR--TVINDIKADQSTFFPQGLLHYQQNMGCEPAGFISILDSSDPGLLVIAAAVAGLPEEAIAAAFDEDEAFVAQMRMGLPKVPARGRAECLVRCGL 200          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDW6_ECTSI1.220e-10974.07Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JV79_9PHAE9.950e-10671.16Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
A0A507FDZ0_9FUNG7.690e-5251.34Cupin type-1 domain-containing protein n=2 Tax=Chy... [more]
A0A433DF28_9FUNG6.040e-4243.16RmlC-like cupin n=2 Tax=Jimgerdemannia flammicoron... [more]
A0A0L0FR85_9EUKA7.370e-4143.65Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0G4EJ88_VITBC7.950e-4145.71Cupin type-1 domain-containing protein n=2 Tax=Vit... [more]
A0A835Z488_9STRA1.740e-4044.32RmlC-like cupin domain-containing protein n=1 Tax=... [more]
A0A835YZF9_9STRA6.350e-4044.51RmlC-like cupin domain-containing protein n=1 Tax=... [more]
A0A836CNU2_9STRA2.750e-3943.96RmlC-like cupin domain-containing protein n=7 Tax=... [more]
A0A0L0GAB9_9EUKA8.280e-3940.21Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig111contigD-herbacea_F_contig111:607238..609663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score326.2
Seed ortholog evalue1.1e-86
Seed eggNOG ortholog2880.D8LDW5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size645
Cds size645
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig111.956.1prot_D-herbacea_F_contig111.956.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig111 607238..609663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.38701-CDS-D-herbacea_F_contig111:607237..6073271622927524.38701-CDS-D-herbacea_F_contig111:607237..607327Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 607238..607327 +
1690790215.0836692-CDS-D-herbacea_F_contig111:607237..6073271690790215.0836692-CDS-D-herbacea_F_contig111:607237..607327Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 607238..607327 +
1622927524.4019477-CDS-D-herbacea_F_contig111:607680..6078841622927524.4019477-CDS-D-herbacea_F_contig111:607680..607884Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 607681..607884 +
1690790215.095575-CDS-D-herbacea_F_contig111:607680..6078841690790215.095575-CDS-D-herbacea_F_contig111:607680..607884Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 607681..607884 +
1622927524.4154558-CDS-D-herbacea_F_contig111:608261..6085041622927524.4154558-CDS-D-herbacea_F_contig111:608261..608504Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 608262..608504 +
1690790215.1053765-CDS-D-herbacea_F_contig111:608261..6085041690790215.1053765-CDS-D-herbacea_F_contig111:608261..608504Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 608262..608504 +
1622927524.4384239-CDS-D-herbacea_F_contig111:609555..6096631622927524.4384239-CDS-D-herbacea_F_contig111:609555..609663Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 609556..609663 +
1690790215.1143644-CDS-D-herbacea_F_contig111:609555..6096631690790215.1143644-CDS-D-herbacea_F_contig111:609555..609663Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 609556..609663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig111.956.1

>prot_D-herbacea_F_contig111.956.1 ID=prot_D-herbacea_F_contig111.956.1|Name=mRNA_D-herbacea_F_contig111.956.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=215bp
MKISWCAATGLGAVVLVASPAAEGQVVTQQQQITMFNTEDFTFNLGGPEP
DNLVDGFQLRFVTLGQLPSLEGQGISMALGNLDPCAINLPHVHPRATEML
YTIEGEKVRVAFVEENGGEGAVVNDLSQGDVAFFPQGLIHYVQNLGCEPA
TFLAALNSEDPGAVTITTRFFELPSEAIQASLNFDDPQIKALIAALPEAP
ATARRECLARCGMSD
back to top

mRNA from alignment at D-herbacea_F_contig111:607238..609663+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig111.956.1 ID=mRNA_D-herbacea_F_contig111.956.1|Name=mRNA_D-herbacea_F_contig111.956.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2426bp|location=Sequence derived from alignment at D-herbacea_F_contig111:607238..609663+ (Desmarestia herbacea DmunF female)
ATGAAGATATCATGGTGCGCTGCTACTGGTTTGGGTGCCGTTGTTCTCGT TGCTTCTCCTGCTGCAGAGGGCCAAGTCGTCACCCAGCAGGTGAGAGCTC GCTGGCTGAAATTGTACTGCGTATCCATTCTACTGTCAATCCTGATAAAA TAATTTGAGCAACGCAGGCGGCCTCATCAGTGTACAGGAGTCGCGTGTTG TCCCTCGTGAATCAGGTTAACACAAGTAGCAATCGAGCACACGACGTTCA AAAACACGCGCAAATCGACTATTTCTGAGGCCCAAACGCACACACGTCCT CGTACGTCTATAGCATTATCGAGTTTTATGTTGGATGGTGCCGCTCTGCC TTTTTATTGCAACCAAGACTATTGCACTGTTGTAGCCAGCCCTAACGCTC CCTCGCTTCTCCTGTCCGGATTGCATGTGTGCCGCTGATACAGCAACAAA TCACCATGTTCAACACGGAGGATTTCACGTTCAATCTCGGCGGGCCCGAG CCTGACAACCTCGTCGACGGCTTTCAGCTCCGATTTGTGACCCTCGGTCA ACTGCCTTCTTTGGAGGGGCAGGGCATCTCCATGGCTCTCGGCAACCTCG ACCCCTGCGCGATCAACCTGCCGCATGTGCACCCCCGCGCCACCGAGGTG AGAGTTTGCACGCGTACGACGTCTGTGTCGATAATGTTGTTGTTAAGCGT ATTTTTATTAATTGATTGATCGGTGGGTTTGATCTGCATCGCGTGTGTCG ACCGAGCTAGGTAGTACCACCGCGCGCCGCGGTATATTAAAATAACAACC CGAAGTCGCAATAAATAACCTGTTGTTCGCTGTCGGCGTGCGTCATCAGT GTGTTCCGAGTATCCTCCATGTCACCCTGTTTTAACTAGCTGCCACAACC AACTGTCACGCATACCGCGTTCATTACGGAACTGTTATAGTGCTTAGGGG GCACCGTCCTGATGTCGAGCGTAACCCACCATCGCTACTTACTAACTTGT TTACACTTCATTGTACATACCCAGATGCTGTACACTATCGAGGGGGAAAA GGTCCGCGTGGCCTTCGTTGAGGAGAACGGCGGAGAAGGTGCCGTGGTGA ACGATCTCTCCCAGGGTGACGTGGCCTTCTTCCCCCAGGGCCTCATCCAC TACGTGCAGAACCTCGGCTGCGAGCCGGCGACTTTCCTGGCCGCCCTGAA CTCCGAGGACCCCGGGGCTGTAACCATCACAACTCGGTTCTTCGAGCTCC CCAGCGAAGCTATCCAGGTACTACATGCCCGAGCCGCTCGTTGTGTTGCG TGTGTTTGTGCTTGGCATATTGCACGTAATCAATTGTGCTAGAATGTCTC AACTTAGGAGTCCACGCACGTCGCGCCGTGTTCTTGTTGGTGCATCATTG ATTGCGTGTCTCGCAGTTATCTAGTTGTACTCCGTTCGTAAAGCATAACG CCGCACGATGTCCCTTTCTGCGCTGAAGGCAGCTGTTGTCGCGTAGAAGA AAGGGTGGTCATGAGGGGGCCATCGTTTAGCATAATGTGCCCCGAAGACG CTGGTCCCTGAAATAAGGATCAAGTGAGGCTGTTTGTGTGAAGGTCGCGG AATTGAAGGTCACCGAGAGTTAGCTTGGCGGATTTTGTTGCAGAATTCTT GTATGTGAAGAAACTGACATGAATGGCGAGTCTGAACGAAGTGCTTCGCA TTACAGTAGCAGTTTGTCTACCATCCACGCCGGAGACGATATTTAATGTC AGATTTAATCGGGTTTTCGTAGGGACAGAGAAAGTGAGATTCCCTTCTGA TTCACGGGGGCGGACGCGCGCGCGCGCGGGGTCACATGGTGACGGCTGCG GCCTAGGCCTTCACCCTCAATAACCTTTGCAGGTCTTTCTGAGCCAATGA ACTCCATCATACGAACCCGTGCCTTCATATATTCTATTTTCCGCTCCTCG TCACTCACTCTCCGATTCCATTAGATCCAATATCCGTTGTAGAGGCAAGA CAATAGAGGAACTGGAGGAAAACCATGGACTCAAGGGGTGGCCAATAGTG CGATGTACGGACGATTTCTAGGTGGGCTATGAAGCTAAGAAGAGGTGCCC CCCATAGGTCACAGAGTGGGGGTTCAGCTCCAATCTTCCTTGTTTTTACT TGAAAGAACCCGAATTTGTTGGTGCTGGTCTACCTGATCGTAGGCTACTT CTTCCAAAAAGCTCCATACTAACTTATGGTGCCGTTGCTCCACGCAGCCT TGAACTATTCGCCTACACGCCTAATCTCGCCCCTCATCCTCCCACTCGTC CGTGTGTTGTTGCACCAGGCTTCCTTGAACTTCGATGACCCCCAGATCAA GGCTCTCATTGCTGCGCTACCCGAGGCGCCCGCCACAGCTCGCCGAGAGT GCCTTGCGCGGTGCGGCATGTCAGAC
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig111:607238..609663+

>mRNA_D-herbacea_F_contig111.956.1 ID=mRNA_D-herbacea_F_contig111.956.1|Name=mRNA_D-herbacea_F_contig111.956.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1290bp|location=Sequence derived from alignment at D-herbacea_F_contig111:607238..609663+ (Desmarestia herbacea DmunF female)
ATGAAGATATCATGGTGCGCTGCTACTGGTTTGGGTGCCGTTGTTCTCGT
TGCTTCTCCTGCTGCAGAGGGCCAAGTCGTCACCCAGCAGATGAAGATAT
CATGGTGCGCTGCTACTGGTTTGGGTGCCGTTGTTCTCGTTGCTTCTCCT
GCTGCAGAGGGCCAAGTCGTCACCCAGCAGCAACAAATCACCATGTTCAA
CACGGAGGATTTCACGTTCAATCTCGGCGGGCCCGAGCCTGACAACCTCG
TCGACGGCTTTCAGCTCCGATTTGTGACCCTCGGTCAACTGCCTTCTTTG
GAGGGGCAGGGCATCTCCATGGCTCTCGGCAACCTCGACCCCTGCGCGAT
CAACCTGCCGCATGTGCACCCCCGCGCCACCGAGCAACAAATCACCATGT
TCAACACGGAGGATTTCACGTTCAATCTCGGCGGGCCCGAGCCTGACAAC
CTCGTCGACGGCTTTCAGCTCCGATTTGTGACCCTCGGTCAACTGCCTTC
TTTGGAGGGGCAGGGCATCTCCATGGCTCTCGGCAACCTCGACCCCTGCG
CGATCAACCTGCCGCATGTGCACCCCCGCGCCACCGAGATGCTGTACACT
ATCGAGGGGGAAAAGGTCCGCGTGGCCTTCGTTGAGGAGAACGGCGGAGA
AGGTGCCGTGGTGAACGATCTCTCCCAGGGTGACGTGGCCTTCTTCCCCC
AGGGCCTCATCCACTACGTGCAGAACCTCGGCTGCGAGCCGGCGACTTTC
CTGGCCGCCCTGAACTCCGAGGACCCCGGGGCTGTAACCATCACAACTCG
GTTCTTCGAGCTCCCCAGCGAAGCTATCCAGATGCTGTACACTATCGAGG
GGGAAAAGGTCCGCGTGGCCTTCGTTGAGGAGAACGGCGGAGAAGGTGCC
GTGGTGAACGATCTCTCCCAGGGTGACGTGGCCTTCTTCCCCCAGGGCCT
CATCCACTACGTGCAGAACCTCGGCTGCGAGCCGGCGACTTTCCTGGCCG
CCCTGAACTCCGAGGACCCCGGGGCTGTAACCATCACAACTCGGTTCTTC
GAGCTCCCCAGCGAAGCTATCCAGGCTTCCTTGAACTTCGATGACCCCCA
GATCAAGGCTCTCATTGCTGCGCTACCCGAGGCGCCCGCCACAGCTCGCC
GAGAGTGCCTTGCGCGGTGCGGCATGTCAGACGCTTCCTTGAACTTCGAT
GACCCCCAGATCAAGGCTCTCATTGCTGCGCTACCCGAGGCGCCCGCCAC
AGCTCGCCGAGAGTGCCTTGCGCGGTGCGGCATGTCAGAC
back to top