mRNA_D-herbacea_F_contig1105.933.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Match: A0A6A3PU23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PU23_9STRA) HSP 1 Score: 110 bits (274), Expect = 3.110e-27 Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 1
Query: 1 WMESMVKRFGVKKATKI--PAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGTLIWTAMMTRPDIGCAVRDVARFCENPGPV-------ILQYLLHTKGWGITYDGQGCGLCMEAYRDSDFGACLDKRRSVSGAVLMLAKGAISWRSRMQEVTASGTSE 453
+ ES++K+FG + A P V L+KAD P+ E+K ++ PYR VG+L++ A TRPDI AV ++RF ENPG +++YLL TK GI YDG G +EAY D+D+ D R SVSG +LML + WRS Q+ A ++E
Sbjct: 13 YTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRHSVSGTLLMLCDAPVMWRSTFQKTVALSSTE 170
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Match: A0A6A3SPB0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SPB0_9STRA) HSP 1 Score: 112 bits (279), Expect = 3.640e-27 Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 1
Query: 1 WMESMVKRFGVKKA----TKIPAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGTLIWTAMMTRPDIGCAVRDVARFCENPGPV-------ILQYLLHTKGWGITYDGQGCGLCMEAYRDSDFGACLDKRRSVSGAVLMLAKGAISWRSRMQEVTASGTSE----VLSEVVK 474
+ ES++K+FG + A T + R L+KAD P+ E+K ++ PYR VG+L++ A TRPDI AV ++RF ENPG +++YLL TK GI YDG G +EAY D+D+ D RRSVSG +LML + WRS Q+ A ++E LS+ VK
Sbjct: 13 YTESIIKKFGQENAKPCLTPLEPGVR---LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEGEYMALSDCVK 181
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Match: A0A6A3J149_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3J149_9STRA) HSP 1 Score: 112 bits (279), Expect = 3.640e-27 Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 1
Query: 1 WMESMVKRFGVKKA----TKIPAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGTLIWTAMMTRPDIGCAVRDVARFCENPGPV-------ILQYLLHTKGWGITYDGQGCGLCMEAYRDSDFGACLDKRRSVSGAVLMLAKGAISWRSRMQEVTASGTSE----VLSEVVK 474
+ ES++K+FG + A T + R L+KAD P+ E+K ++ PYR VG+L++ A TRPDI AV ++RF ENPG +++YLL TK GI YDG G +EAY D+D+ D RRSVSG +LML + WRS Q+ A ++E LS+ VK
Sbjct: 13 YTESIIKKFGQENAKPCLTPLEPGVR---LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEDEYMALSDCVK 181
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Match: A0A6G0Q496_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q496_9STRA) HSP 1 Score: 110 bits (275), Expect = 3.790e-27 Identity = 71/171 (41.52%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 1 WMESMVKRFGVKKATK--IPAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGTLIWTAMMTRPDIGCAVRDVARFCENPGPV-------ILQYLLHTKGWGITYDGQGCGLCMEAYRDSDFGACLDKRRSVSGAVLMLAKGAISWRSRMQEVTASGTSEV----LSEVVK 474
+ ES++K+FG + A P V L+KAD P+ E+K ++ PYR VG+L++ A TRPDI AV ++RF ENPG +++YLL TK GI YDG G EAY D+D+ D RRSVSG +LML + WRS Q+ A ++E LS+ VK
Sbjct: 13 YTESIIKKFGQENAKPWLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVK 181
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA) HSP 1 Score: 112 bits (279), Expect = 7.880e-27 Identity = 71/171 (41.52%), Postives = 98/171 (57.31%), Query Frame = 1
Query: 1 WMESMVKRFGVKKATKI--PAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGTLIWTAMMTRPDIGCAVRDVARFCENPGPV-------ILQYLLHTKGWGITYDGQGCGLCMEAYRDSDFGACLDKRRSVSGAVLMLAKGAISWRSRMQEVTASGTSEV----LSEVVK 474
+ ES++K+FG + A P V L+KAD P+ E+K ++ PYR VG+L++ A TRPDI AV ++RF ENPG +++YLL TK GI YDG G +EAY D+D+ D RRSVSG +LML + WRS Q+ A ++E LS+ VK
Sbjct: 54 YTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVK 222
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.400e-26 Identity = 71/171 (41.52%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 1 WMESMVKRFGVKKATKI--PAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGTLIWTAMMTRPDIGCAVRDVARFCENPGPV-------ILQYLLHTKGWGITYDGQGCGLCMEAYRDSDFGACLDKRRSVSGAVLMLAKGAISWRSRMQEVTASGTSEV----LSEVVK 474
+ ES++K+FG + A P V L+KAD P+ E+K ++ PYR VG+L++ A TRPDI AV ++RF ENPG ++ YLL TK GI YDG G +EAY D+D+ D RRSVSG +LML + WRS Q+ A ++E LS+ VK
Sbjct: 102 YTESIIKKFGQENAKPYLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVK 270
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.630e-26 Identity = 71/171 (41.52%), Postives = 98/171 (57.31%), Query Frame = 1
Query: 1 WMESMVKRFGVK--KATKIPAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGTLIWTAMMTRPDIGCAVRDVARFCENPGPV-------ILQYLLHTKGWGITYDGQGCGLCMEAYRDSDFGACLDKRRSVSGAVLMLAKGAISWRSRMQEVTASGTSEV----LSEVVK 474
+ ES++K+FG + K P V L+KAD P+ E+K ++ PYR VG+L++ A TRPDI AV ++RF ENPG +++YLL TK GI YDG G +EAY D+D+ D RRSVSG +LML + WRS Q+ A ++E LS+ VK
Sbjct: 110 YTESIIKKFGQENTKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVK 278
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.020e-25 Identity = 71/171 (41.52%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 1 WMESMVKRFGVKKATKI--PAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGTLIWTAMMTRPDIGCAVRDVARFCENPGPV-------ILQYLLHTKGWGITYDGQGCGLCMEAYRDSDFGACLDKRRSVSGAVLMLAKGAISWRSRMQEVTASGTSEV----LSEVVK 474
+ ES++K FG + A P V L+KAD P+ E+K ++ PYR VG+L++ A TRPD+ AV ++RF ENPG ++YLL TK GI YDGQ G +EAY D+D+ D RRSVSG +LML + WRS Q+ A ++E LS+ VK
Sbjct: 359 YTESIIKTFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVK 527
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.170e-25 Identity = 71/171 (41.52%), Postives = 99/171 (57.89%), Query Frame = 1
Query: 1 WMESMVKRFGVKKATKI--PAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGTLIWTAMMTRPDIGCAVRDVARFCENPGPV-------ILQYLLHTKGWGITYDGQGCGLCMEAYRDSDFGACLDKRRSVSGAVLMLAKGAISWRSRMQEVTASGTSEV----LSEVVK 474
+ ES++K+FG + A P V L+KAD P+ E+K ++ PYR VG+L++ A TRPDI AV ++RF ENPG +++YLL TK GI YDG G +EAY D+D+ D RRSVSG +LML + + WRS Q+ A ++E LS+ VK
Sbjct: 657 YTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVK 825
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.340e-25 Identity = 70/171 (40.94%), Postives = 98/171 (57.31%), Query Frame = 1
Query: 1 WMESMVKRFGVKKATKI--PAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGTLIWTAMMTRPDIGCAVRDVARFCENPGPV-------ILQYLLHTKGWGITYDGQGCGLCMEAYRDSDFGACLDKRRSVSGAVLMLAKGAISWRSRMQEVTASGTSEV----LSEVVK 474
+ ES++K+FG + A P V L+KAD P+ E+K ++ PYR VG+L++ A TRPDI AV ++RF ENPG +++YLL TK GI YDG G +EAY D+D+ D RRSVSG +LM+ + WRS Q+ A ++E LS+ VK
Sbjct: 134 YTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMMCGAPVVWRSTFQKTVALSSTEAEYMALSDCVK 302 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1105.933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1105.933.1 >prot_D-herbacea_F_contig1105.933.1 ID=prot_D-herbacea_F_contig1105.933.1|Name=mRNA_D-herbacea_F_contig1105.933.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=158bp MESMVKRFGVKKATKIPAASRVSTLSKADGPRNPEEKKYIRKFPYREAVGback to top mRNA from alignment at D-herbacea_F_contig1105:57391..57867+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1105.933.1 ID=mRNA_D-herbacea_F_contig1105.933.1|Name=mRNA_D-herbacea_F_contig1105.933.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=477bp|location=Sequence derived from alignment at D-herbacea_F_contig1105:57391..57867+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1105:57391..57867+ >mRNA_D-herbacea_F_contig1105.933.1 ID=mRNA_D-herbacea_F_contig1105.933.1|Name=mRNA_D-herbacea_F_contig1105.933.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=948bp|location=Sequence derived from alignment at D-herbacea_F_contig1105:57391..57867+ (Desmarestia herbacea DmunF female)back to top |