mRNA_D-herbacea_F_contig110.906.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig110.906.1
Unique NamemRNA_D-herbacea_F_contig110.906.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig110.906.1 vs. uniprot
Match: D8LTX1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTX1_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.230e-25
Identity = 84/141 (59.57%), Postives = 95/141 (67.38%), Query Frame = 3 
Query:  180 MSAKIAKRMMASVDDMVSRASLATKRTDLTTSKRKAAKRALLGAPSKR--SGKEGAVVSKSGSISKK-ARKSARRPKMGLLEQARIELRGKSRAVRNVSLLSY-------AVPPDSVKGA---------KSRKAVDHLLRL 545
            MS+KIAKRMM+ VD+MVSRAS ATKRTDL+TSK+KAAKRALL APSKR  SG      S S S++KK AR  A R  MGLL++AR ELRGKS   RNVSLLSY       A    +  GA         KSRKAV+HLL L
Sbjct:    1 MSSKIAKRMMSRVDEMVSRASSATKRTDLSTSKKKAAKRALLQAPSKRKGSGSTSVATSSSRSVTKKSARNKAGRRTMGLLDKARRELRGKSLVARNVSLLSYSSRGEGRAAGAGADSGAAKVGGGVASKSRKAVEHLLLL 141
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTX1_ECTSI1.230e-2559.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig110contigD-herbacea_F_contig110:469701..473628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004010.1
Exons3
Model size1444
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig110.906.1prot_D-herbacea_F_contig110.906.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig110 470579..473449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.2238238-UTR-D-herbacea_F_contig110:469700..4705781622927516.2238238-UTR-D-herbacea_F_contig110:469700..470578Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 469701..470578 -
1690790211.484353-UTR-D-herbacea_F_contig110:469700..4705781690790211.484353-UTR-D-herbacea_F_contig110:469700..470578Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 469701..470578 -
1622927516.2683702-UTR-D-herbacea_F_contig110:473449..4736281622927516.2683702-UTR-D-herbacea_F_contig110:473449..473628Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 473450..473628 -
1690790211.529788-UTR-D-herbacea_F_contig110:473449..4736281690790211.529788-UTR-D-herbacea_F_contig110:473449..473628Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 473450..473628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.233433-CDS-D-herbacea_F_contig110:470578..4707831622927516.233433-CDS-D-herbacea_F_contig110:470578..470783Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 470579..470783 -
1690790211.4980903-CDS-D-herbacea_F_contig110:470578..4707831690790211.4980903-CDS-D-herbacea_F_contig110:470578..470783Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 470579..470783 -
1622927516.2455652-CDS-D-herbacea_F_contig110:471408..4715121622927516.2455652-CDS-D-herbacea_F_contig110:471408..471512Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 471409..471512 -
1690790211.5091715-CDS-D-herbacea_F_contig110:471408..4715121690790211.5091715-CDS-D-herbacea_F_contig110:471408..471512Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 471409..471512 -
1622927516.2575517-CDS-D-herbacea_F_contig110:473371..4734491622927516.2575517-CDS-D-herbacea_F_contig110:473371..473449Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 473372..473449 -
1690790211.5225747-CDS-D-herbacea_F_contig110:473371..4734491690790211.5225747-CDS-D-herbacea_F_contig110:473371..473449Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 473372..473449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig110.906.1

>prot_D-herbacea_F_contig110.906.1 ID=prot_D-herbacea_F_contig110.906.1|Name=mRNA_D-herbacea_F_contig110.906.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=129bp
MSAKIAKRMMASVDDMVSRASLATKRTDLTTSKRKAAKRALLGAPSKRSG
KEGAVVSKSGSISKKARKSARRPKMGLLEQARIELRGKSRAVRNVSLLSY
AVPPDSVKGAKSRKAVDHLLRLGQGGAK*
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mRNA from alignment at D-herbacea_F_contig110:469701..473628-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig110.906.1 ID=mRNA_D-herbacea_F_contig110.906.1|Name=mRNA_D-herbacea_F_contig110.906.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3928bp|location=Sequence derived from alignment at D-herbacea_F_contig110:469701..473628- (Desmarestia herbacea DmunF female)
CACTTGCCCACTGCAAGCGTCAGAAGGACTCAGGAGGAGCGAAGTTGAGC
TGTATCGGTACCCGAGTCAAGTTAAATTGGTGCGTCAAAGCCAACGTTGC
ATCGCTAGGAGGCTGAAACTGGAAGTGACTGGTTGTGGTGACATTACCAG
GTCGGAAGGACGGCTAGCTGCTGTGTATCATGTCCGCAAAGATTGCAAAG
AGGATGATGGCCAGCGTGGACGACATGGTATCCAGGGCCTCGTTGGCCAC
AAAACGAGTGAGTGAACAACAAACAAACGCTCTACGTACCACTGCTGTAC
TGTTGTTACGCTGTATGTTGTGGAATAGTGGGTGCCGAGACTGCTGACCT
TAGTGCTAGTGTGAGGGTGGAATTGTTGGCGAGAGAATAGGAGAACGTAC
TCGTACAGCCGTACAGTAGACTACGGTATACGAGTACGAGTATAGTCTAT
CAGTACGGTATCTGGTACATACAGCATTCGATGTACTCGTACACTCGTAT
AATACAAGTAGCGCGCGTGACAAAGCTGCGTGCAGCGTGCTGGACAGGGT
GCCTGGTGTCGCACAATCTGGTGCAATGGACCGTCCAAAAGTGAGAGGCA
TGGCTAGGTATAATTGTGCGGTGCGTCTTTTCAAAGCTCTTCCTGGTATT
GTATCATACGACGGCGCAAGTCGGTCACTGCTGTTCCCTCCGCGCAGTAT
CCATCCCGTGATTCCGGTAGTATACCATGGTACTTGATACCATACCTCAC
GCAGTGAAATTTACTCAGTATGTGGAGCTCTTCTGACAACCCCAAGCAAT
CAGACGTATGCATGAAACGAGTCTTGAGTCTTGAACAACTCACTACCGTA
CAGCAGTAGTATAATAGGACGGACTGCCGGTGGGAGCTGCGGTACCGGTA
ACACGCGAGCTGGTACGTGTCTCGCCTTCTCACGACCGGCGGTACGGTAG
GATCGTTTCAAACGACTCCATTTGTTCAACTTCTTGATTCAAATTGAGGG
GCGACGCTGTGGTCTACGTGGTTAGATTGTGAACCCTGTTGGCGGAAGTT
CGGGGTTCGATTTCCGGTGACAACAAAACGACACTTTTCTGTGCCATCTT
CCGTCGCGGAAACCGCGAGAGCGCGAGTAAAGCACAATGCGGTGAAAACC
AACGAGCTAAGGGAATGCCGAACCCTGTGCCCGCCAAGGCAGGCGTTTGC
CGGCGACGGCAAATGTGGGACGGTGCTCCCGAGGCTACGTGTTGATAGTG
AGTTTATGGTGTGGGCTGCACCGGGGTGGAGAACGGAGTACTCTTACCAC
TGTTGTTGTACCGAGTACAGACGAAGTGAACCGAGGTGACATCAAACTTG
TGTGTAATGAGGCGGTACTATCTATAGGGGACGGGGACTTGGCATCCACA
ATTATAGCCACAGTAGTAGTAGTTGTCCATGGTTCTCGCAGCCACCAGCC
AAAATGGCATGTACAAACACCGTACTCGTATATCATACACAAGAGACGAC
TTGCGAACGTTTTCATTTTTTACGGATTTTGCGATTGTTTTTTTCCACAT
TTGGAACTTGGCGCGATGGGCTTTTCGACGAATCGAAAATTCAAAATTCA
AGATCCAAGCAAACGCATCATACTGATAGGATACTAGAAAGAAAATGTGC
GGATACTCTAGACCACAAGACAGATTTATATTCAGACTTCACTCATACTA
ACAACCGTTCTATGTACGACTACTGTAAATCTTGTCTAATCCATAATCCA
CTAATAATATTTGTATCGAGCCATGCTACGGTAGGGGGGATACGTTTGGG
CCCTAAAATGCTCTGACTGATGGGGCTCTTCAACTGAGGAACAACCCAAT
ATCTTTGAAATTACGTGCGTGATGTAACTTTTTATTGGAAATATACGTAG
CCGATAAGAACGTTTATCGGCTTGCGCGCACTTATTTTGTCCAAGGCGGG
TTTTGGTTGAGATATAGAGCTCTTCAAGTGAGGAGCCTCGGGAAATTTGG
GTACCACCCCTACCGTAGCATGCCTCTATCGTAGAACTCCAAGTAAACTG
TTACTACGAACCCAACCTTGCACGTCTCTCACAAAGTGATCATTACTTGC
AACCACCCCCCGACAGACGGACCTGACCACGAGCAAGCGAAAAGCTGCAA
AGCGCGCCCTGCTCGGAGCGCCATCGAAGCGAAGTGGAAAGGAGGGAGCG
GTAGTCTCCAAGTCTGGCAGGTCAGCGAGCCATGCGCGCCGGGGTTGAGC
AAGACCCAGATCATACGATAGTAGTTGCTTGCTTTGACAAACTATACCTT
TGGTACATTATACATTAATCTAGTTTTACTACGCCTTCCGCCGGACGCGG
TCCAGTTGCAGTGCACCCTACTCGTTAGGGCTTTGGTCCTCGGGTGTCTA
GATTCTCGTTCCCGGTAAATACCTTCCCAGAGAGTAGCTCTACACACCTG
TGGCTTTTTTTCCTTGCTGATTTCGCTCCGAACGTTTTGTTTCCCATCCG
TTTATTATGGTAGCACGGGCAGCCGCGGTGGGTCGTGTGATCCTCTCCAT
TTTTTGTTTGCATGTCGTGATGTATATCATATCTCTCGTTCACTTTGTCT
GAGTGAGTTGAAACTTCGTGCTTAGTCCCGCCTACGAGTATTATGTCTTA
CGAGTACCTTTTTAGTTTTTATTTGGGGGCCGGTATACTTTGTTTTAATT
AATTTTTGTCCTTGTTCTTACTCGTCGTGCGCGGCCACATGCTTCGTTAA
CCCTCCCCCCATGTTGGTTTTATGGAGAAACAATCATAACTTGAGTTTTC
CTGATCATTTATTTCGTGTTTCCCACCCTGACTTGGATGCTGCAGCATAT
CTAAGAAGGCGCGAAAGAGCGCAAGAAGACCGAAGATGGGCTTGCTAGAA
CAAGCGCGTATAGAGTTGCGCGGAAAGTCCCGTGCGGTGCGGAACGTTAG
TCTGCTCTCCTACGCGGTTCCGCCGGACAGTGTAAAGGGCGCCAAATCAC
GCAAGGCCGTGGACCATCTACTGCGTCTGGGTCAGGGAGGCGCCAAGTAG
AAAAGTAATACTAGTAAACCGTGACGGTCGTTTGGAGAGTGCAAGATTTT
GTTTAGGGTGTGCTTTGGTGTCCCACATGCTTCGAATTTTGCATGTAAAA
CGGAGGTGGTGGCATTGCCTTTAGCATAGCACAGCACGGGGATGTTTAGC
TGAGTGTGGCGTGTGTTATATACAACGCTCGTATTCGTGCTCTTCTGTAA
TGTTCTTCCTGCGCAAGCAAAAATGCAGGGGTGTCTTTTTTGTTATTTTT
ATCTGGACATTGTTTTTGGCGTTGTTGTTGGTGTGGTGAGAATTGATATG
ACAGTATTGTTGCGAAAAGCGACAGGTAGGAGGAAACTGTCGGGTGTTTG
ATGCGAAATCCGGCAGCGACAAGAGCCGTGTTTGATCGAGTACGTGGTTG
TCATGCTCGCAAGCGATGAGATACCAAACTATGTTTTGAGTTGTACGTTA
CAAAGACATCATCGTCAGCCGCGACGTTCCAAACTCGTTCGGAACCTTTG
GAAGTGCTCCCATCAGAGAAGCGCATCGATAGTTGCTCTCTCTTGTTTAC
ATGATGATGTCATTGCCCCCTTTCACGAAACGCAATATCTTGTTCTGCTT
ACACCCGTGCACGCGCATACGGGATGAGTTGGTAGGTGGGACCATCGAGG
TTCAAGTAACCGTAGTAGTAGTAGGGAAAATATAGTGCGAGGGTGACTTG
AGAGCTGGAGACTGGAGAGGGAGGGCGGTCGATTGAGAGAGGCGATCACG
GCGAGGATTCGGTAGCTGGTGGGTAGAGAGGGACGTGGGGGGGTTGCGCA
AGGTATGCCGTTCACATCCAGCACCTATAATAGTAGTGCTGAGTTTGACC
TACTTAGGAGTACGAGCAATAGTGTACG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig110:469701..473628-

>mRNA_D-herbacea_F_contig110.906.1 ID=mRNA_D-herbacea_F_contig110.906.1|Name=mRNA_D-herbacea_F_contig110.906.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=774bp|location=Sequence derived from alignment at D-herbacea_F_contig110:469701..473628- (Desmarestia herbacea DmunF female)
ATGTCCGCAAAGATTGCAAAGAGGATGATGGCCAGCGTGGACGACATGGT
ATCCAGGGCCTCGTTGGCCACAAAACGAATGTCCGCAAAGATTGCAAAGA
GGATGATGGCCAGCGTGGACGACATGGTATCCAGGGCCTCGTTGGCCACA
AAACGAACGGACCTGACCACGAGCAAGCGAAAAGCTGCAAAGCGCGCCCT
GCTCGGAGCGCCATCGAAGCGAAGTGGAAAGGAGGGAGCGGTAGTCTCCA
AGTCTGGCAGACGGACCTGACCACGAGCAAGCGAAAAGCTGCAAAGCGCG
CCCTGCTCGGAGCGCCATCGAAGCGAAGTGGAAAGGAGGGAGCGGTAGTC
TCCAAGTCTGGCAGCATATCTAAGAAGGCGCGAAAGAGCGCAAGAAGACC
GAAGATGGGCTTGCTAGAACAAGCGCGTATAGAGTTGCGCGGAAAGTCCC
GTGCGGTGCGGAACGTTAGTCTGCTCTCCTACGCGGTTCCGCCGGACAGT
GTAAAGGGCGCCAAATCACGCAAGGCCGTGGACCATCTACTGCGTCTGGG
TCAGGGAGGCGCCAAGTAGCATATCTAAGAAGGCGCGAAAGAGCGCAAGA
AGACCGAAGATGGGCTTGCTAGAACAAGCGCGTATAGAGTTGCGCGGAAA
GTCCCGTGCGGTGCGGAACGTTAGTCTGCTCTCCTACGCGGTTCCGCCGG
ACAGTGTAAAGGGCGCCAAATCACGCAAGGCCGTGGACCATCTACTGCGT
CTGGGTCAGGGAGGCGCCAAGTAG
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