mRNA_D-herbacea_F_contig1071.689.1 (mRNA) Desmarestia herbacea DmunF female
|
Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6A3HFF3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HFF3_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.950e-44 Identity = 99/241 (41.08%), Postives = 134/241 (55.60%), Query Frame = 1
Query: 1 NPCRKMVPLSKDDAPHTEVETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAV---VEVVNYARFLRQVKGFLPPPIDDIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNT 714
NPC + LSK +P T+ E MR PYR IG L++ T TRPD+A+V QL +F NPG HW AA R L+YL TR GI Y G T L + D D TS D RR V VM G + + S+ Q+ A +S+++EY+A+ V+ V + R + V G L I ED++ AI + N RT+HVD++HH +R+ VE G V++ V + Q AD+LTKALG T
Sbjct: 49 NPCAAGLKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSTRQHGIIYHGGTHTVT-LKAYSDADWGTSLDDRRSVSGVMVMT-GNAPVVFKSKFQRTGALSSAEAEYMALSLCVQEVLWTRAMLTVMGTLQRNATTIW---EDNQGAIALVHNAGYHARTKHVDIRHHFIRENVERGTVKVEYVDTKNQLADILTKALGTKT 284
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 159 bits (403), Expect = 2.690e-44 Identity = 86/220 (39.09%), Postives = 128/220 (58.18%), Query Frame = 1
Query: 82 PYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
P+RE IG+LMW AT TRPD+A + ++ +P +HWRA L Y+ RT D+GIT+ + + D D A+ RR V VM G G +SWFSR QK +++++EYV++ +V+ FLRQV+ F+ P I ED++ AI++A+N S+ ++H+DV+HH +R+ V + I V+S QHAD LTKAL FE H ++
Sbjct: 32 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGG-GCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYV 250
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL) HSP 1 Score: 161 bits (407), Expect = 7.370e-43 Identity = 95/247 (38.46%), Postives = 135/247 (54.66%), Query Frame = 1
Query: 1 NPCRKMVPLSKDDAPHTEVETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPIDDIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFLR 741
NPC + + LSK D P + + M PYR IG L + A TRPD+A+ L +F NPG HW AA R L+YL TRD GI+YGG T + + D D TS D RR V +M+ G G I + ++ Q A +SS++EY+A+ ++R + L I I ED++ AI +A N RT+H+D++HH VRD V V+++ V++ Q AD+LTK+LG FE +R
Sbjct: 263 NPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNG-GPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRFEFLRELMR 507
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.630e-42 Identity = 88/220 (40.00%), Postives = 128/220 (58.18%), Query Frame = 1
Query: 82 PYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
P+RE IG+LMW AT TRPD+A + ++ +P +HWRA L Y+ RT D+GIT+ + +VD D A+ RR V VM G G ISWFSR QK +++++EYV++ +V+ FLRQV F+ P I ED++ AI++A+N S+ ++H+DV+HH +R+ V + I V+S QHAD LTKAL FE H ++
Sbjct: 216 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGG-GCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 434
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB) HSP 1 Score: 152 bits (385), Expect = 5.430e-42 Identity = 85/238 (35.71%), Postives = 136/238 (57.14%), Query Frame = 1
Query: 4 PCRKMVPLSKDDAPHTEVETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPIDDIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTF 717
P PLS + +P + E M+ PYREA+G LM+AA +TRPD+ Y Q+ +F +NPG HW+A +R L+Y+ T+ +GI Y G+ +T S D D A DTRR ++ G G + W S QK + +++++EYVA + +LR + L + + D++ AI++ KN ++T+H+D+K+H +R+ VE G ++I V + EQ AD+LTKA+ + F
Sbjct: 10 PADPNAPLSNEQSPVNDEEKVSMQEMPYREAVGCLMFAAILTRPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSGSHIDFTAYS---DADFAGDVDTRRSTTGYITLMAG-GPVIWSSHRQKCISRSTTEAEYVAASDASQEVTWLRILLQELCVDLKNPTPLHMDNQSAIRLTKNTEHHKKTKHIDIKYHYIRECVEHGAIKIIYVCTEEQLADILTKAVPRDKF 243
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 154 bits (389), Expect = 7.720e-42 Identity = 86/228 (37.72%), Postives = 131/228 (57.46%), Query Frame = 1
Query: 58 ETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
E E P+RE +G+LMW AT TRPD+A + ++ +P +VHW+AA L Y+ RT +GIT+ + +VD D A+ RR V VM G G ++WFSR QK +++++EYVA+ +V+ FLRQV F+ P I ED++ AI++A N ++ ++H+DV+HH +R+ VE + I +V + QHAD LTKA+ +F H F+
Sbjct: 91 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGG-GCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFV 317
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 159 bits (401), Expect = 2.080e-41 Identity = 88/220 (40.00%), Postives = 128/220 (58.18%), Query Frame = 1
Query: 82 PYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
P+RE IG+LMW AT TRPD+A + ++ +P +HWRA L Y+ RT D+GIT+ + +VD D A+ RR V VM G G ISWFSR QK +++++EYV++ +V+ FLRQV F+ P I ED++ AI++A+N S+ ++H+DV+HH +R+ V + I V+S QHAD LTKAL FE H ++
Sbjct: 390 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGG-GCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 608
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 155 bits (391), Expect = 7.220e-41 Identity = 97/247 (39.27%), Postives = 142/247 (57.49%), Query Frame = 1
Query: 4 PCRKMVPLSKDDAPHTEVETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYG-GTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
P V LS DA EV TE P+RE +G+LMW AT TRPD+A + ++ +P LVHW AA L Y RT GI++ GT ++ L + D D A+ RR V ++ G GA+SWFSR QK +++++EYVA+ +VV FLRQ+ F+ P + I ED++ AI++A+N S+ ++H+DV+HH +R+ VE + + V S Q AD LTK+L + FE+H F+
Sbjct: 220 PMSSGVKLSDFDA--DEVATE----FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFS-LQGYADADFASKAADRRSVSG-GIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 458
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE) HSP 1 Score: 151 bits (382), Expect = 1.020e-40 Identity = 88/251 (35.06%), Postives = 138/251 (54.98%), Query Frame = 1
Query: 1 NPCR-KMVPLSKDDAPHTEVETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID----DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
N CR +P S + + +E E P+RE +G+LMW A TRPD++ + + +H P HW+AA++ L YL T + + + +VD D A+ + RR V A++L + W S+ QK + + S++EY A+ + V A F+ + FL P + D++ ED+E AI +A+N SS R++H+DV+HH +R+ E GV+ + V S EQHAD+LTKAL + FE H F+
Sbjct: 78 NVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSG-AIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVL---EDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 324
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.410e-40 Identity = 88/220 (40.00%), Postives = 129/220 (58.64%), Query Frame = 1
Query: 82 PYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
P+RE IG+L+W AT TRPD+A + ++ +P +HWRA L Y+ RT D+GIT+G + + D D A+ RR V VM G G ISWFSR QK +++++EYV+V +V+ FLR+V F+ P I ED++ A+++A+N S+ ++H+DV+HH +R+ V + I V+S QHAD LTKAL V FE H F+
Sbjct: 907 PFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGG-GCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFHRNFV 1125 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1071.689.1 >prot_D-herbacea_F_contig1071.689.1 ID=prot_D-herbacea_F_contig1071.689.1|Name=mRNA_D-herbacea_F_contig1071.689.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=128bp MLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPback to top mRNA from alignment at D-herbacea_F_contig1071:28565..29305- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1071.689.1 ID=mRNA_D-herbacea_F_contig1071.689.1|Name=mRNA_D-herbacea_F_contig1071.689.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=741bp|location=Sequence derived from alignment at D-herbacea_F_contig1071:28565..29305- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1071:28565..29305- >mRNA_D-herbacea_F_contig1071.689.1 ID=mRNA_D-herbacea_F_contig1071.689.1|Name=mRNA_D-herbacea_F_contig1071.689.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=768bp|location=Sequence derived from alignment at D-herbacea_F_contig1071:28565..29305- (Desmarestia herbacea DmunF female)back to top |