mRNA_D-herbacea_F_contig1071.689.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1071.689.1
Unique NamemRNA_D-herbacea_F_contig1071.689.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6A3HFF3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HFF3_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.950e-44
Identity = 99/241 (41.08%), Postives = 134/241 (55.60%), Query Frame = 1
Query:    1 NPCRKMVPLSKDDAPHTEVETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAV---VEVVNYARFLRQVKGFLPPPIDDIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNT 714
            NPC   + LSK  +P T+ E   MR  PYR  IG L++  T TRPD+A+V  QL +F  NPG  HW AA R L+YL  TR  GI Y G     T L  + D D  TS D RR V    VM  G   + + S+ Q+  A +S+++EY+A+   V+ V + R +  V G L      I    ED++ AI +  N     RT+HVD++HH +R+ VE G V++  V +  Q AD+LTKALG  T
Sbjct:   49 NPCAAGLKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSTRQHGIIYHGGTHTVT-LKAYSDADWGTSLDDRRSVSGVMVMT-GNAPVVFKSKFQRTGALSSAEAEYMALSLCVQEVLWTRAMLTVMGTLQRNATTIW---EDNQGAIALVHNAGYHARTKHVDIRHHFIRENVERGTVKVEYVDTKNQLADILTKALGTKT 284          
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.690e-44
Identity = 86/220 (39.09%), Postives = 128/220 (58.18%), Query Frame = 1
Query:   82 PYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
            P+RE IG+LMW AT TRPD+A     + ++  +P  +HWRA    L Y+ RT D+GIT+         +  + D D A+    RR V    VM  G G +SWFSR QK    +++++EYV++ +V+    FLRQV+ F+ P      I   ED++ AI++A+N  S+  ++H+DV+HH +R+ V    + I  V+S  QHAD LTKAL    FE H  ++
Sbjct:   32 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGG-GCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYV 250          
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 161 bits (407), Expect = 7.370e-43
Identity = 95/247 (38.46%), Postives = 135/247 (54.66%), Query Frame = 1
Query:    1 NPCRKMVPLSKDDAPHTEVETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPIDDIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFLR 741
            NPC + + LSK D P  + +   M   PYR  IG L + A  TRPD+A+    L +F  NPG  HW AA R L+YL  TRD GI+YGG     T +  + D D  TS D RR V    +M+ G G I + ++ Q   A +SS++EY+A+        ++R +   L   I   I   ED++ AI +A N     RT+H+D++HH VRD V   V+++  V++  Q AD+LTK+LG   FE     +R
Sbjct:  263 NPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNG-GPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRFEFLRELMR 507          
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.630e-42
Identity = 88/220 (40.00%), Postives = 128/220 (58.18%), Query Frame = 1
Query:   82 PYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
            P+RE IG+LMW AT TRPD+A     + ++  +P  +HWRA    L Y+ RT D+GIT+         +  +VD D A+    RR V    VM  G G ISWFSR QK    +++++EYV++ +V+    FLRQV  F+ P      I   ED++ AI++A+N  S+  ++H+DV+HH +R+ V    + I  V+S  QHAD LTKAL    FE H  ++
Sbjct:  216 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGG-GCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 434          
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB)

HSP 1 Score: 152 bits (385), Expect = 5.430e-42
Identity = 85/238 (35.71%), Postives = 136/238 (57.14%), Query Frame = 1
Query:    4 PCRKMVPLSKDDAPHTEVETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPIDDIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTF 717
            P     PLS + +P  + E   M+  PYREA+G LM+AA +TRPD+ Y   Q+ +F +NPG  HW+A +R L+Y+  T+ +GI Y G+   +T  S   D D A   DTRR       ++ G G + W S  QK  + +++++EYVA  +      +LR +   L   + +      D++ AI++ KN    ++T+H+D+K+H +R+ VE G ++I  V + EQ AD+LTKA+  + F
Sbjct:   10 PADPNAPLSNEQSPVNDEEKVSMQEMPYREAVGCLMFAAILTRPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSGSHIDFTAYS---DADFAGDVDTRRSTTGYITLMAG-GPVIWSSHRQKCISRSTTEAEYVAASDASQEVTWLRILLQELCVDLKNPTPLHMDNQSAIRLTKNTEHHKKTKHIDIKYHYIRECVEHGAIKIIYVCTEEQLADILTKAVPRDKF 243          
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 7.720e-42
Identity = 86/228 (37.72%), Postives = 131/228 (57.46%), Query Frame = 1
Query:   58 ETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
            E E     P+RE +G+LMW AT TRPD+A     + ++  +P +VHW+AA   L Y+ RT  +GIT+         +  +VD D A+    RR V    VM  G G ++WFSR QK    +++++EYVA+ +V+    FLRQV  F+ P      I   ED++ AI++A N  ++  ++H+DV+HH +R+ VE   + I +V +  QHAD LTKA+   +F  H  F+
Sbjct:   91 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGG-GCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFV 317          
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.080e-41
Identity = 88/220 (40.00%), Postives = 128/220 (58.18%), Query Frame = 1
Query:   82 PYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
            P+RE IG+LMW AT TRPD+A     + ++  +P  +HWRA    L Y+ RT D+GIT+         +  +VD D A+    RR V    VM  G G ISWFSR QK    +++++EYV++ +V+    FLRQV  F+ P      I   ED++ AI++A+N  S+  ++H+DV+HH +R+ V    + I  V+S  QHAD LTKAL    FE H  ++
Sbjct:  390 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGG-GCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 608          
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 7.220e-41
Identity = 97/247 (39.27%), Postives = 142/247 (57.49%), Query Frame = 1
Query:    4 PCRKMVPLSKDDAPHTEVETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYG-GTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
            P    V LS  DA   EV TE     P+RE +G+LMW AT TRPD+A     + ++  +P LVHW AA   L Y  RT   GI++  GT   ++ L  + D D A+    RR V    ++  G GA+SWFSR QK    +++++EYVA+ +VV    FLRQ+  F+ P +    I   ED++ AI++A+N  S+  ++H+DV+HH +R+ VE   + +  V S  Q AD LTK+L  + FE+H  F+
Sbjct:  220 PMSSGVKLSDFDA--DEVATE----FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFS-LQGYADADFASKAADRRSVSG-GIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 458          
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.020e-40
Identity = 88/251 (35.06%), Postives = 138/251 (54.98%), Query Frame = 1
Query:    1 NPCR-KMVPLSKDDAPHTEVETE*MRVTPYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID----DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
            N CR   +P S  +   + +E E     P+RE +G+LMW A  TRPD++     + + +H P   HW+AA++ L YL  T  + + +            +VD D A+  + RR V   A++L     + W S+ QK  + + S++EY A+ + V  A F+  +  FL P  +    D++   ED+E AI +A+N  SS R++H+DV+HH +R+  E GV+ +  V S EQHAD+LTKAL  + FE H  F+
Sbjct:   78 NVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSG-AIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVL---EDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVHRDFV 324          
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.410e-40
Identity = 88/220 (40.00%), Postives = 129/220 (58.64%), Query Frame = 1
Query:   82 PYREAIGALMWAATMTRPDVAYVAYQLGKFNHNPGLVHWRAAERALQYLWRTRDVGITYGGTPR*YTKLSTWVDVDVATSPDTRRLVPDRAVMLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPPID-DIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHDVKSGEQHADVLTKALGVNTFETHARFL 738
            P+RE IG+L+W AT TRPD+A     + ++  +P  +HWRA    L Y+ RT D+GIT+G        +  + D D A+    RR V    VM  G G ISWFSR QK    +++++EYV+V +V+    FLR+V  F+ P      I   ED++ A+++A+N  S+  ++H+DV+HH +R+ V    + I  V+S  QHAD LTKAL V  FE H  F+
Sbjct:  907 PFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGG-GCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFHRNFV 1125          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1071.689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3HFF3_9STRA1.950e-4441.08Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6H5JTK6_9PHAE2.690e-4439.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1CTN1_PYTOL7.370e-4338.46Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6H5JLN0_9PHAE1.630e-4240.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C9BC1AB5.430e-4235.71secreted RxLR effector protein 161-like n=1 Tax=Ve... [more]
A0A6H5KP70_9PHAE7.720e-4237.72Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB8_9PHAE2.080e-4140.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE7.220e-4139.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBM6_9PHAE1.020e-4035.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LC04_9PHAE1.410e-4040.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1071contigD-herbacea_F_contig1071:28565..29305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3A8FB@33154,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size741
Cds size384
Stop0
Taxonomic scopeOpisthokonta
Seed ortholog score80.1
Seed ortholog evalue8.3e-13
Seed eggNOG ortholog400682.PAC_15698807
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927481.7837932-CDS-D-herbacea_F_contig1071:28564..289481622927481.7837932-CDS-D-herbacea_F_contig1071:28564..28948Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1071 28565..28948 -
1690790194.2444515-CDS-D-herbacea_F_contig1071:28564..289481690790194.2444515-CDS-D-herbacea_F_contig1071:28564..28948Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1071 28565..28948 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927481.8017876-UTR-D-herbacea_F_contig1071:28948..293051622927481.8017876-UTR-D-herbacea_F_contig1071:28948..29305Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1071 28949..29305 -
1690790194.2667727-UTR-D-herbacea_F_contig1071:28948..293051690790194.2667727-UTR-D-herbacea_F_contig1071:28948..29305Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1071 28949..29305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1071.689.1prot_D-herbacea_F_contig1071.689.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1071 28565..28948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1071.689.1

>prot_D-herbacea_F_contig1071.689.1 ID=prot_D-herbacea_F_contig1071.689.1|Name=mRNA_D-herbacea_F_contig1071.689.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=128bp
MLRGRGAISWFSRVQKVTAAASSDSEYVAVVEVVNYARFLRQVKGFLPPP
IDDIIITREDSEVAIKMAKNRFSSRRTRHVDVKHHIVRDAVESGVVRIHD
VKSGEQHADVLTKALGVNTFETHARFLR
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mRNA from alignment at D-herbacea_F_contig1071:28565..29305-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1071.689.1 ID=mRNA_D-herbacea_F_contig1071.689.1|Name=mRNA_D-herbacea_F_contig1071.689.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=741bp|location=Sequence derived from alignment at D-herbacea_F_contig1071:28565..29305- (Desmarestia herbacea DmunF female)
AACCCCTGTCGGAAGATGGTGCCCCTGTCCAAGGATGATGCCCCACATAC CGAGGTGGAGACGGAATAAATGCGTGTCACCCCTTACCGGGAGGCGATAG GGGCCCTAATGTGGGCTGCAACCATGACCCGCCCTGACGTCGCGTACGTT GCTTATCAGCTAGGAAAATTTAACCACAACCCGGGACTAGTACACTGGAG GGCGGCGGAAAGGGCACTTCAATACCTGTGGCGCACGAGGGATGTTGGGA TCACTTACGGAGGAACGCCGAGGTAGTACACTAAACTGTCGACATGGGTG GACGTCGATGTCGCCACTTCCCCAGACACTCGGCGTTTGGTTCCAGACAG AGCGGTGATGCTGCGGGGGCGGGGCGCGATCAGTTGGTTCTCGAGGGTGC AGAAGGTGACCGCGGCGGCGTCATCCGATTCAGAGTATGTGGCGGTGGTA GAAGTTGTAAATTATGCCCGTTTTCTTCGACAGGTGAAAGGGTTCTTGCC TCCGCCGATCGACGACATCATTATAACCAGGGAGGATAGTGAAGTAGCTA TCAAGATGGCGAAGAATCGTTTCAGCAGCAGGCGTACGAGGCACGTGGAC GTGAAACACCACATCGTCCGCGATGCGGTAGAGAGTGGTGTAGTTCGAAT CCATGACGTCAAGTCGGGGGAGCAACATGCCGATGTGCTAACAAAAGCGT TGGGCGTCAATACCTTTGAAACGCACGCGAGATTTCTGCGT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1071:28565..29305-

>mRNA_D-herbacea_F_contig1071.689.1 ID=mRNA_D-herbacea_F_contig1071.689.1|Name=mRNA_D-herbacea_F_contig1071.689.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=768bp|location=Sequence derived from alignment at D-herbacea_F_contig1071:28565..29305- (Desmarestia herbacea DmunF female)
ATGCTGCGGGGGCGGGGCGCGATCAGTTGGTTCTCGAGGGTGCAGAAGGT
GACCGCGGCGGCGTCATCCGATTCAGAGTATGTGGCGGTGGTAGAAGTTG
TAAATTATGCCCGTTTTCTTCGACAGGTGAAAGGGTTCTTGCCTCCGCCG
ATCGACGACATCATTATAACCAGGGAGGATAGTGAAGTAGCTATCAAGAT
GGCGAAGAATCGTTTCAGCAGCAGGCGTACGAGGCACGTGGACGTGAAAC
ACCACATCGTCCGCGATGCGGTAGAGAGTGGTGTAGTTCGAATCCATGAC
GTCAAGTCGGGGGAGCAACATGCCGATGTGCTAACAAAAGCGTTGGGCGT
CAATACCTTTGAAACGCACGCGAGATTTCTGCGTATGCTGCGGGGGCGGG
GCGCGATCAGTTGGTTCTCGAGGGTGCAGAAGGTGACCGCGGCGGCGTCA
TCCGATTCAGAGTATGTGGCGGTGGTAGAAGTTGTAAATTATGCCCGTTT
TCTTCGACAGGTGAAAGGGTTCTTGCCTCCGCCGATCGACGACATCATTA
TAACCAGGGAGGATAGTGAAGTAGCTATCAAGATGGCGAAGAATCGTTTC
AGCAGCAGGCGTACGAGGCACGTGGACGTGAAACACCACATCGTCCGCGA
TGCGGTAGAGAGTGGTGTAGTTCGAATCCATGACGTCAAGTCGGGGGAGC
AACATGCCGATGTGCTAACAAAAGCGTTGGGCGTCAATACCTTTGAAACG
CACGCGAGATTTCTGCGT
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