mRNA_D-herbacea_F_contig105.540.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.540.1
Unique NamemRNA_D-herbacea_F_contig105.540.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Match: D8LSE4_ECTSI (Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE4_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.420e-68
Identity = 118/159 (74.21%), Postives = 134/159 (84.28%), Query Frame = 1 
Query:   67 MRPVFNLFFLFGSSVGFYANPAIRSVSTAAVGSIVGSSLIRSASAVS--SQPKARFTTTSMNTVDFVENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHTVYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGALKDLLEG 537
            MRPV NLFFLFGSSVGFYANP +R V   AV S  GS+++R+ASA +  SQ +A+FTT SMN+VDFVE EI+ NNVV+FSKSYCPFC+RTK LF  LGV  TVYELD+ +DG+ IQAILGAKTGQTTVPNVFVKG HVGGNDAVQAANSSGALK LL+G
Sbjct:    1 MRPVLNLFFLFGSSVGFYANPMMRRV---AVSSFAGSTIVRAASATAFPSQRQAKFTT-SMNSVDFVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLDG 155
[Close]
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Match: A0A835YTN8_9STRA (Glutaredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.720e-32
Identity = 72/133 (54.14%), Postives = 87/133 (65.41%), Query Frame = 1 
Query:  148 TAAVGSIVGSSLIRSAS---AVSSQPKARFTTTSMNTVDFVENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHTVYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGALKDLLEG 537
            TAA  +  GSS I  AS   A S+ PK       +   DFV+ +I   ++V+FSKSYCP+C++TKALF +L    TV ELD+R+DG  IQA L   TGQ TVPNVFVKG HVGGNDA Q ANS G LK L+ G
Sbjct:   32 TAATVTGQGSSFINGASMPMADSAPPKMAM----LAPADFVKQQIASQDIVVFSKSYCPYCAKTKALFQSLDAGATVIELDQRDDGGDIQAALAEITGQRTVPNVFVKGTHVGGNDATQKANSDGTLKSLMNG 160
[Close]
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Match: A0A7S3NI43_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NI43_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.340e-30
Identity = 55/91 (60.44%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:  259 VENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHTVYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGALKDLL 531
            +++ I+ N+VVIFSKSYCPFC++TKALF +L V   +YELD+R+DG +IQ+ L  KTGQ+TVPNVF+KG+H+GGND  Q A++SG L +LL
Sbjct:   43 IDDTIKANDVVIFSKSYCPFCAKTKALFQSLNVDADIYELDQRDDGAEIQSKLKEKTGQSTVPNVFIKGEHLGGNDDTQRAHASGKLAELL 133
[Close]
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Match: A0A7S4TBW2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TBW2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.900e-30
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:  229 TTTSMNTVDFVENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHTVYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGALKDLL 531
            T T  +  +FV+ EI  NNVV+FSKSYCP+C+ TK L + +  K  ++ELDE NDGDQIQ  L   TGQ TVPNVFVKGKH+GGND   AA  SG L ++L
Sbjct:   65 TRTMASPAEFVKTEITNNNVVVFSKSYCPYCTSTKRLLSEMNAKPKIFELDEMNDGDQIQRTLHELTGQRTVPNVFVKGKHLGGNDDTHAAARSGRLNEML 165
[Close]
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Match: A0A7S1CWF6_9CHLO (Hypothetical protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CWF6_9CHLO)

HSP 1 Score: 119 bits (297), Expect = 6.680e-30
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:  259 VENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHTVYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGALKDLLE 534
            V++ I+  +VV+FSKS+CPFC++TK LF  LGV   +YELD+R+DG +IQA L   TGQ+TVPNVF+KG+H+GGND  Q AN+SG L  +LE
Sbjct:   50 VDDAIKAKDVVVFSKSFCPFCAKTKTLFRELGVDADIYELDQRDDGSEIQATLKEMTGQSTVPNVFIKGEHLGGNDDTQQANASGELAKMLE 141
[Close]
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Match: A0A1Z5KQE3_FISSO (Glutaredoxin 3 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQE3_FISSO)

HSP 1 Score: 119 bits (297), Expect = 7.950e-30
Identity = 65/136 (47.79%), Postives = 86/136 (63.24%), Query Frame = 1 
Query:  130 AIRSVSTAAVGSIVGSSLIRSASAVSSQPKARFTTTS--MNTVDFVENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHTVYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGALKDLL 531
            A  + ST A    + S  + +A+A+ +QP + + T     +  DF+ +EI  N V IFSKSYCPFCS+TKA F  LGV   ++EL++ +DG  IQ  L   TGQ TVPNVFV GKH+GGND  Q A +SG +K LL
Sbjct:   11 AFAATSTKAFAPSIKSRPLAAANAIVTQPSSNYLTVRHMASKTDFITSEINSNQVTIFSKSYCPFCSKTKASFAELGVDAKIFELNQMDDGADIQDTLFEMTGQKTVPNVFVNGKHIGGNDDTQKAIASGEMKKLL 146
[Close]
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Match: A0A1X2GSF3_9FUNG (Glutaredoxin n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GSF3_9FUNG)

HSP 1 Score: 117 bits (292), Expect = 1.370e-29
Identity = 58/92 (63.04%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:  259 VENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHTVYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGALKDLLE 534
            VE  I  N +VIFSK+YCP+C+ TK LF  LG   T+ ELD RNDG  IQ  L  KTGQ TVPNVFVK +H+GGND VQAAN +G LK LLE
Sbjct:   16 VEELIANNKIVIFSKTYCPYCTSTKTLFKKLGQDATIIELDTRNDGSAIQNYLLTKTGQRTVPNVFVKQQHIGGNDNVQAANGNGTLKKLLE 107
[Close]
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Match: A0A1Z5KSJ8_FISSO (Glutaredoxin 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSJ8_FISSO)

HSP 1 Score: 113 bits (283), Expect = 2.370e-28
Identity = 53/93 (56.99%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:  253 DFVENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHTVYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGALKDLL 531
            DF++ E + + VV++SKSYCP+C+ TK LF  L V H V+ELD+ ++G+ IQA L   TGQ TVPNVF+KGKH+GGND  QAA+ SG L+ LL
Sbjct:    6 DFIQKEHDASPVVVWSKSYCPYCTATKNLFQKLNVPHKVHELDQMSNGNDIQAALQQMTGQRTVPNVFIKGKHLGGNDDTQAAHRSGHLQQLL 98
[Close]
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Match: A0A7S2GQN2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GQN2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.680e-28
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:  253 DFVENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHTVYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGALKDLL 531
            +FV++EI  NNVV+FSKSYCPFC+ TK +  ++     V+ELDE N+GDQIQ  L   TGQ TVPNVF+KGKH+GGND  Q A  SG L ++L
Sbjct:   72 EFVKSEIANNNVVVFSKSYCPFCTSTKRILGSMDTNPKVFELDEMNNGDQIQGALYDLTGQRTVPNVFIKGKHLGGNDDTQRAARSGKLDEML 164
[Close]
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Match: A0A0L0HVH8_SPIPD (Glutaredoxin n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HVH8_SPIPD)

HSP 1 Score: 112 bits (281), Expect = 8.190e-28
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:  253 DFVENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHTVYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGALKDLLE 534
            + VE  I+ N VV+FSKSYCP+C + K L  +LGVK+ ++ELDER DG  IQ  L  KTGQ TVPN+F+KG+H+GG D + AA+ SG L+ LL+
Sbjct:   25 ELVEKAIKENKVVVFSKSYCPYCKKAKNLLDSLGVKYELFELDERPDGQAIQEYLKEKTGQRTVPNIFIKGQHIGGCDDLHAAHDSGKLQKLLD 118
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSE4_ECTSI1.420e-6874.21Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A835YTN8_9STRA3.720e-3254.14Glutaredoxin n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S3NI43_9STRA1.340e-3060.44Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4TBW2_9STRA4.900e-3057.43Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1CWF6_9CHLO6.680e-3058.70Hypothetical protein n=1 Tax=Picochlorum oklahomen... [more]
A0A1Z5KQE3_FISSO7.950e-3047.79Glutaredoxin 3 n=1 Tax=Fistulifera solaris TaxID=1... [more]
A0A1X2GSF3_9FUNG1.370e-2963.04Glutaredoxin n=1 Tax=Hesseltinella vesiculosa TaxI... [more]
A0A1Z5KSJ8_FISSO2.370e-2856.99Glutaredoxin 3 n=2 Tax=Fistulifera solaris TaxID=1... [more]
A0A7S2GQN2_9STRA5.680e-2858.06Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A0L0HVH8_SPIPD8.190e-2855.32Glutaredoxin n=1 Tax=Spizellomyces punctatus (stra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:364835..370390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score113.6
Seed ortholog evalue8.3e-23
Seed eggNOG ortholog109760.SPPG_00747T0
Preferred nameGRX1
KEGG koko:K03676
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0004364,GO:0004601,GO:0004602,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010731,GO:0015036,GO:0016209,GO:0016491,GO:0016667,GO:0016684,GO:0016740,GO:0016765,GO:0019538,GO:0033554,GO:0034599,GO:0034641,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051186,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:0098869,GO:1901564,GO:1990748
EggNOG free text desc.Glutaredoxin
EggNOG OGs3A8AE@33154,3P6QI@4751,COG0695@1,KOG1752@2759
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-21_003380.1
COG Functional cat.O
BiGG ReactioniMM904.YDR513W
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons6
Model size820
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.540.1prot_D-herbacea_F_contig105.540.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 365115..370324 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.0891154-UTR-D-herbacea_F_contig105:364834..3651141622927463.0891154-UTR-D-herbacea_F_contig105:364834..365114Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 364835..365114 -
1690790184.1584845-UTR-D-herbacea_F_contig105:364834..3651141690790184.1584845-UTR-D-herbacea_F_contig105:364834..365114Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 364835..365114 -
1622927463.1776867-UTR-D-herbacea_F_contig105:370324..3703901622927463.1776867-UTR-D-herbacea_F_contig105:370324..370390Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 370325..370390 -
1690790184.2229-UTR-D-herbacea_F_contig105:370324..3703901690790184.2229-UTR-D-herbacea_F_contig105:370324..370390Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 370325..370390 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927463.1046922-CDS-D-herbacea_F_contig105:365114..3652191622927463.1046922-CDS-D-herbacea_F_contig105:365114..365219Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 365115..365219 -
1690790184.1711552-CDS-D-herbacea_F_contig105:365114..3652191690790184.1711552-CDS-D-herbacea_F_contig105:365114..365219Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 365115..365219 -
1622927463.1150167-CDS-D-herbacea_F_contig105:365727..3657741622927463.1150167-CDS-D-herbacea_F_contig105:365727..365774Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 365728..365774 -
1690790184.1799374-CDS-D-herbacea_F_contig105:365727..3657741690790184.1799374-CDS-D-herbacea_F_contig105:365727..365774Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 365728..365774 -
1622927463.1269426-CDS-D-herbacea_F_contig105:366362..3664361622927463.1269426-CDS-D-herbacea_F_contig105:366362..366436Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 366363..366436 -
1690790184.1889482-CDS-D-herbacea_F_contig105:366362..3664361690790184.1889482-CDS-D-herbacea_F_contig105:366362..366436Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 366363..366436 -
1622927463.1369524-CDS-D-herbacea_F_contig105:367426..3675041622927463.1369524-CDS-D-herbacea_F_contig105:367426..367504Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 367427..367504 -
1690790184.1973875-CDS-D-herbacea_F_contig105:367426..3675041690790184.1973875-CDS-D-herbacea_F_contig105:367426..367504Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 367427..367504 -
1622927463.151032-CDS-D-herbacea_F_contig105:369299..3694221622927463.151032-CDS-D-herbacea_F_contig105:369299..369422Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 369300..369422 -
1690790184.2056606-CDS-D-herbacea_F_contig105:369299..3694221690790184.2056606-CDS-D-herbacea_F_contig105:369299..369422Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 369300..369422 -
1622927463.163146-CDS-D-herbacea_F_contig105:370277..3703241622927463.163146-CDS-D-herbacea_F_contig105:370277..370324Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 370278..370324 -
1690790184.2136846-CDS-D-herbacea_F_contig105:370277..3703241690790184.2136846-CDS-D-herbacea_F_contig105:370277..370324Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 370278..370324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.540.1

>prot_D-herbacea_F_contig105.540.1 ID=prot_D-herbacea_F_contig105.540.1|Name=mRNA_D-herbacea_F_contig105.540.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=158bp
MRPVFNLFFLFGSSVGFYANPAIRSVSTAAVGSIVGSSLIRSASAVSSQP
KARFTTTSMNTVDFVENEIEGNNVVIFSKSYCPFCSRTKALFTTLGVKHT
VYELDERNDGDQIQAILGAKTGQTTVPNVFVKGKHVGGNDAVQAANSSGA
LKDLLEG*
back to top

mRNA from alignment at D-herbacea_F_contig105:364835..370390-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.540.1 ID=mRNA_D-herbacea_F_contig105.540.1|Name=mRNA_D-herbacea_F_contig105.540.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5556bp|location=Sequence derived from alignment at D-herbacea_F_contig105:364835..370390- (Desmarestia herbacea DmunF female)
CGACAGACAGTACAGCAGTAATTCCTTTCGCACCGTACCCTTCAAAAACC
ACCCACCAGCATCACCATGAGACCAGTATTCAACTTGTTCTTCCTCTTCG
GCTCATCTGTCGGGTGAGTGGAGATGCACTACTGGAAAGCTTGCAAAAAG
AAGGACACGGACCAGAAGCTGGAGGAGATCTGACTTTTGTCATACACTCT
CGCCAGTATCATAGTTCGACTTTTTGTGTGCACAGACATGTACACGTGCG
TTGCATGGAAGCTCTGTGGTAGACCGTACTGCTCGCATATGCCGCGTTGC
ACGCCCACAATACCGTGTCTATTACGATGGTATTGTCAATACAACAACAC
AAGTTCCGCCATAACTTTTACTAGCGTTGTGCTAGGTGTATCTGCGTCAT
AGAAACCAAACCGTGCGGTATCATACCGTCTGTGCTACTACGAGTGTTAA
AGTAGTGTTCTGTCGTACTGTACCAGCCACGTATGCATGCGGTGAATGCC
TCGACGTGCCAACAGCACACACTATCATACTATTTAATACCACTAACTAC
TGTTGTACCACTGGTACTGTGTTTACATCGGGCGCCAACAACTGCAGTGC
AGCACGAAATATTTGCAAACTTAACTCCGCCCGGCTGTAGTACTTGCAAG
CAGGTGACCATGATGGCCTGACGTAGAGCTCTATCGTACAACTACTGTTG
TGGTAGTATCATAGCTGTGTGCAGAGTGCGGACGTCTGCTACTACTACTA
CTACTGTTGTTGTAGTTGAAACACGACATGCAGCTAAAAGTCCGTAACAT
TTGTTTTTGTGAGCGTGTTATTACGGGCTAGATTTTAGCGATGAGTTATG
AATGCATGTGAGAACAGCGGCAGCGCAACACAGCAACGGCATCAACTATG
ATACTACTGTCTGTCAGTCAAACATACCTGGTGTGTAATTCGTACTTGGT
GCCTTTTTCTTCCAACAGGTTCTACGCCAACCCGGCCATTCGATCGGTGA
GCACGGCCGCCGTCGGATCCATCGTGGGCAGTAGCCTCATCCGATCTGCG
AGCGCCGTTTCGAGTCAGCCCAAGGCCAGGTTTACGACGACGTGAGATAA
GAGAGACTGCTCTGCTGCGCGAAGACGTCGTATCCTTTTATAGCCTCCCG
TGTGTGTCTTCATTTTGTGTTTGGAGTTACTAGTTGGAGCTGGGGTTGTT
GAACATATTGACACGGCACAGCAGCCGAAAAACTCTGCTGCTGTGTTACT
TGTACTACTGTTAGTATTAATATCTTGTTTCGTATGCATGTACAAGGTTT
CTGCGGCTGACACCGCTGTGCTCAAACGAATGATACCGAGTCGCCAAGGC
CAACAGAACATGACCGTAGCCACACTAGATTGATGGAGTTGAGAGCAGGC
TTGTTGGGACAATTGGGGACGCTCATGTTGGTAACGGATCGCAGGGTAGT
TGCAAAGTAGTTGCAATCATTGAACCTGGTTTTAGTCGAATCCAGAAAAA
TCCCATGATACCGTATGATACGACGTTATGTTGGCAGTAGGAATACTACT
GTACAATAATATTGCGGTACTTTTTTTTTGTGTTGGGAAGCTCAACAGCA
ACAGCACGAAGCAAGGTTGTCAGAAATACCTATGATAAGAAACGCGTTGC
AACAACAACACAGCAAACAGACGGCAAAACGGAAAGGCTGATTATAGGGA
CACGCTTCGAGCGGCATGCAGAGGAGCGGAGGGCTGACTGGCGTGGCTAT
GGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACCCAACC
GTCACAATTGGAAGTTACATGAAGCTCAAACGCGACAACAAAAGAGCACG
AAGGTCACTAGAAGCACATGAACTACCCGCAGCACAGAGAGTCACATATC
ACGCGCTTCAGGCATGTGGGGAAGTAGAGAGGAGTTGGCTGGTGTGGCTG
GCAGACTCTTACTCGCTAGAGGAGGGCGCGGGTGTGTGGGGAGCATCATG
ACATACCACGCGGCTATGCCAATATGGCTATCATACAACCGTAATTACAG
TAGTGCGGTACAATACCTCTAGATACACCGCAAGCGGGGTGCGTTTCTAT
GTTTTGCGTGTGATGTGATGGAGCATAGCAAGCCGGCCTGACTGTGTCGA
TGTCGGCCATAACAGAACTACCACAACGATTCTTCGTCGTTTTCGCGCCC
CAGTGCGTGTTTACAAGCTCTTATTTCATGCACCCCGCGACGGTGTCTCC
GCAGTTCTCGAGGCTACCTGTGTTCGATTCGCCCCGTGCCATGGGCTGCC
AATATCATACATAGCAGGAATATTGGACCGTATCATGCTATTTTAGCAAA
GATAAACGCAACACCTCAGGGTTTGTTTATAGTGATTGTCCAGCGCTGTC
ATGGCCTGTACTGTCCCCTGCTGGCTGCTCGCGCTGGACCTTAAATCCTC
GACCTTTTTGTTGCGGGGTGTTTTTAACGCCGCAATCATTCATAGATGGC
CAAACAAGGTAGAAACATACGGCAAGCAAATGCGGAGTGCAAGGCGTTTG
TATTCACCTGCGTTATGTTGGCTTGCGGGGCTGTTGGGGAGGATAAAATA
CGCCTCGCTTTTTCTGTCATATCGCTTTTCTGTCAAGTTTTGACACAAAA
AATTAAGTTTGAAGTTTTTACTATTATACTACTGGAGTATTATGTATGCT
GTGTGCTGGCGCTGCGTCAAAAAAAAGAAAGAACGGGCCACCAAAGGCAG
TACTCCGTTTTCATGTTTTTTTTTATGACGTTCGATAAAAACATAAAAAC
GACGAGACCAAAGCCGTTGTTGACGTGAGAGCCGTGTTTTTTATGTCGTG
TTTTTTTGTTTTCGTTTTTCGCTTTTACCACAACAGGTCGATGAACACGG
TGGACTTCGTGGAGAACGAGATCGAGGGCAACAACGTCGTTATCTTCTCC
AAGTCTTACTGTCCGTGAGTGAACCTCCGCTGACTGTCGTCCTATTGATA
GCGTTTTGCCGGCAGATAAGCTGGGATAAATGGAACACACGCAGTCGATC
GGTCACGGCATGCGTGGACTCGGCAAGGGCAACGATGACTTATAATTTCG
TTGTTTACATTATTATTATTATTATTATTATTATTATTATTATTATTATT
ATTATTGTTATTATTTCCGTCGCATTAGCCCGATCGCGCGGACCCGTGGT
CACAAAGGTAGGCACCTTTTTTTACCGAAAAAAAAAAAAGCAAACCTTCA
AAAAGCTTTTTTTTAAAATAAAAAAGGGGGAATTTGTGCGAAGATTAAAC
TTCATTTTTAGCCCATCCAACGGAGGATTACAACAACAACAACAAAAATT
GGACCCGGCACGCAATAAAAACGTTAAAAATGCAAGGCAGGCACCTAAAG
GAGTGGGGGTGAGGGGGAGAGGAGGGAGTCTTCCACCTTGCAACCCCGGG
TCCGAATCGAAAACGGGATAGTGGGGCGGTAACACACACACACACACACA
CACGAGCGCGAGCAGGGGGAGTATAGCTGGCCGGCCTTTTTTCAGCACAC
TCCCGCTCCCGCGCTCGTCGACTTTGTTTGCGTCAAATTTGTTCTTGCTG
CTGTTTTTTACTCGTGTTAAGTTACTACTACTGCTACTACTGTGTGTGGG
ATGTACGAGAAGATCTGCAATTTCGATTATAGTCGTGGAGTGCTTCTTGT
GCGTGCGCGTAGTTTCCGGAAAATATGTTAGCTTATGCCGCCGCCACCAC
TTCCAGCTCACGGCGGCTGCACCTCCTCCCTCCCCTCCCACTTTTTTTGT
TTTGTTTTGGTCCGTCTCTGTTTCTAACCATCGGCTTTTGTCGCCCTTCC
TTACAAGTAGTCGCTGTTTTCTGTTGTTCGTGGCTTGAAAAAAAAACAAT
GTTGTGTGTTATGTGGTTTTTGTGGTCTGCTGTTTGTTGCATGATGCATG
ATAGGTTTTGCTCCAGGACCAAGGCTCTGTTCACCACGCTTGGAGTGAAG
CACACCGTCTACGAGCTCGACGAGAGGAGTGAGTTAGACTGTTGTTGTGC
TACTTTTGAGTGTGCAAAAAAACAAAAGTGGTGTATATGTCGCCCGTATA
CGATGACACGAGCTACGATAAGGTGGAGCTTGCACGTGTCGACCGTAATT
CTTCGTAACGATTTTTCCATTCGACGTCCTTTCGTAAAATCCGTTTGATT
TCCCCCCAGGACGACTTTCGTTATTTTTTCCTTATTGCAAGTCGTCTATT
AAATATGATAAATAGCTGTATACGCTATTAATAGGATAAGAGCTACATAC
GTCATAGTTTACGATTCCGCACATTGACTGGAGGCGTTTGGACACAGCCA
GACTTGTACTGCGGTACAAACAGTAAGGCTTGGAGAAGAGAGGCTAGGGC
GCCCACTGTTATCGTGCTTTGGTCTCCCCGAAATGAGGGAGGACAAGCGA
ACGACCAGTCGGTGTGGTGTTCCGTTCCGCTGCTTCCGGCGTGATTTTCC
GCTGTTTTTTTTTTTCTCCCACGTATCATGATGGTCGGAACATGACGGTT
CACTGTCTGCGTTGTTTTTGCTTGCGGTACGATACTACCGTGTGTGTTTT
GTGTTGCTTACGCCAGATGACGGTGACCAGATCCAGGCTATTCTCGGGGC
GAAGACTGGACAGGTAAAGCTTGAGGGGGGGCGAGTTTGGGGGACGGGGT
TACGACAATATGTTAACAAGATGATGACGCATATGATAGCGTACTGGAAT
TAGACCCCCCAGTGCTCAACCCCCGGGATGGTATTCGTAGTATCATAGCA
GGAACGCAGTGAAAAATTTGTAGCGCCTGGTAGCGATCAATCACAGCAAT
CTCCAGGTGTATCTTCTACGTCTTGGAAGAGCAGGTCGTGTCACAGTAGT
AGTCATGTGGGAATTCTAGCGGGGTCCATATAACGTGGTTGTCAATTTGT
GGAACAACCCCCCCCCCCCCTATCCTCCCCTCTTTACGTTTTTGTAAGGT
ATGGTAAAAACGTAAAGAGCGCCCAAATGTTTGGAGGTGTCTATTATTGG
GAGTAGGAACGGTGCTCTGTCTCGAAAGGGATGCGTGGTCAATGGTCAAA
TGACTAATGCAAGCAACAAATGAGTACCCCCCCCCCCCCCCTCCCGCTGC
TGCATCTTTTACCGCCTGCAGACCACTGTCCCGAATGTATTCGTGAAGGG
CAAGCACGTCGGGGGCAACGACGCCGTCCAGGCCGCCAACAGCAGCGGCG
CTCTTAAGGACCTCTTGGAAGGCTAACTTTAGACATTTTTGAGTCTGGAT
TATCGATGGTGGCCGCGAGAGAGGGGAGGACGGGAGGGGGAGGACGGAGA
TACAAGAGACACCTATTACGGGATGTATCGAGCCCCCTGTCTCGCTGTTT
TGTTTCCACACGCGTTGTTGGCGGTTCGTTAGGGGCGCTTTCACATGGTA
CAAGGGCGCATTCGCAAGAGATGAGAATACTCGTAGTATGATGGAAGATT
CGCAAAAAAGGTCGTTGTATTGCGGATATTATGTTTTAAAAAATGGTTGA
GTGGGG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig105:364835..370390-

>mRNA_D-herbacea_F_contig105.540.1 ID=mRNA_D-herbacea_F_contig105.540.1|Name=mRNA_D-herbacea_F_contig105.540.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=948bp|location=Sequence derived from alignment at D-herbacea_F_contig105:364835..370390- (Desmarestia herbacea DmunF female)
ATGAGACCAGTATTCAACTTGTTCTTCCTCTTCGGCTCATCTGTCGGATG
AGACCAGTATTCAACTTGTTCTTCCTCTTCGGCTCATCTGTCGGGTTCTA
CGCCAACCCGGCCATTCGATCGGTGAGCACGGCCGCCGTCGGATCCATCG
TGGGCAGTAGCCTCATCCGATCTGCGAGCGCCGTTTCGAGTCAGCCCAAG
GCCAGGTTTACGACGACGTTCTACGCCAACCCGGCCATTCGATCGGTGAG
CACGGCCGCCGTCGGATCCATCGTGGGCAGTAGCCTCATCCGATCTGCGA
GCGCCGTTTCGAGTCAGCCCAAGGCCAGGTTTACGACGACGTCGATGAAC
ACGGTGGACTTCGTGGAGAACGAGATCGAGGGCAACAACGTCGTTATCTT
CTCCAAGTCTTACTGTCCGTCGATGAACACGGTGGACTTCGTGGAGAACG
AGATCGAGGGCAACAACGTCGTTATCTTCTCCAAGTCTTACTGTCCGTTT
TGCTCCAGGACCAAGGCTCTGTTCACCACGCTTGGAGTGAAGCACACCGT
CTACGAGCTCGACGAGAGGAGTTTTGCTCCAGGACCAAGGCTCTGTTCAC
CACGCTTGGAGTGAAGCACACCGTCTACGAGCTCGACGAGAGGAATGACG
GTGACCAGATCCAGGCTATTCTCGGGGCGAAGACTGGACAGATGACGGTG
ACCAGATCCAGGCTATTCTCGGGGCGAAGACTGGACAGACCACTGTCCCG
AATGTATTCGTGAAGGGCAAGCACGTCGGGGGCAACGACGCCGTCCAGGC
CGCCAACAGCAGCGGCGCTCTTAAGGACCTCTTGGAAGGCTAAACCACTG
TCCCGAATGTATTCGTGAAGGGCAAGCACGTCGGGGGCAACGACGCCGTC
CAGGCCGCCAACAGCAGCGGCGCTCTTAAGGACCTCTTGGAAGGCTAA
back to top