mRNA_D-herbacea_F_contig103.387.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig103.387.1 vs. uniprot
Match: D7G262_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G262_ECTSI) HSP 1 Score: 298 bits (764), Expect = 2.970e-94 Identity = 159/243 (65.43%), Postives = 185/243 (76.13%), Query Frame = 3
Query: 102 MKTF-YAGALGLLAVSSVAWADCDQFKS-LPVPLTGDTTLELISANVDCPILADNDLEEFVIQGGTLTLTGSSTTKFTNLRFTVKDGAKLIFDFAMTEFGPNVGYEQEDDYGGFMVQVESGGKVEFTGETYATNLENMRSVFYNE--GSIKFGSNAVFHDCDSNVFRDNLGSLRFFGDVTFTENRYLAISNDGGTVRIKGDALFVTNGRSFEGHNGGAFANYNGGTSIFRGTATFSDNRCDES 818
M++F + ALGL A SSV A CD ++ L PLTGDTTLEL S + DCPIL DN+LEEF ++GGTLTLTG STTKFTNL+FT+ D A LIFD+ TEFGPN+GYEQED +GG+MVQV SGG VEF GE AT L NMRSVFYNE G+I+F NAVF D +NVFR NLG LRF+GD TFT N YLAI N+GG+VRI V NGRSF+GH+GG F+N +GGT+IFRG A FS N CDES
Sbjct: 1 MRSFLFISALGLWATSSVR-ASCDDLRTALSSPLTGDTTLEL-SGDADCPILEDNELEEFTVEGGTLTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGYEQEDSFGGYMVQVLSGGSVEFLGEMAATGLANMRSVFYNEAGGNIEFADNAVFDDIGTNVFRSNLGRLRFYGDATFTNNIYLAIDNEGGSVRIXXXXXXVENGRSFDGHSGGGFSNTDGGTAIFRGPALFSSNACDES 241
BLAST of mRNA_D-herbacea_F_contig103.387.1 vs. uniprot
Match: A0A6H5JB77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB77_9PHAE) HSP 1 Score: 133 bits (334), Expect = 7.300e-32 Identity = 74/128 (57.81%), Postives = 84/128 (65.62%), Query Frame = 3
Query: 438 MVQVESGGKVEFTGETYATNLENMRSVFYNE--GSIKFGSNAVFHDCDSNVFRDNLGSLRFFGDVTFTENRYLAISNDGGTVRIKGDALFVTNGRSFEGHNGGAFANYNGGTSIFRGTATFSDNRCDE 815
MVQV +GG VEF GE AT L NMRSVFYNE GSI+ LRF+GD TFT N YLAI NDGG+VRI G+A FV NGRSF+GH+GG F+N +GG +IFRG A FS N CDE
Sbjct: 1 MVQVLTGGSVEFLGEMAATGLANMRSVFYNEAGGSIE---------------------LRFYGDATFTNNIYLAIDNDGGSVRINGEATFVENGRSFDGHSGGGFSNTDGGIAIFRGPALFSSNTCDE 107
BLAST of mRNA_D-herbacea_F_contig103.387.1 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI) HSP 1 Score: 125 bits (315), Expect = 3.140e-28 Identity = 108/306 (35.29%), Postives = 149/306 (48.69%), Query Frame = 3
Query: 123 ALGLLAVSSVAWADCDQFKSLPVPLTGDTTLELISA-NVDCPILADNDLEEF----VIQGGTLTLTGS-STTKFTNLRFTVKDGAKLIFDFAMTEFGPNVGYEQEDDYGGFMVQVESGGKVEFTGETYATNLENMRSVFYNEGSIKFGSNAVFHDCDSNVFRDNLGSLRFFGDVTFTENRYLAISNDG--GTVRIKGDALFVTNGRSFEGHNGGAFANYNGGTSIFRGTATFSDNRCDESGGGVYNGPDSKMXXXXXXXXXXXXXXXXXXXGLDN-------MGGVVKFKAAVRVSGNEAASSGGV 995
AL L+A S+V +CD + ++ T ++L + VDCP +++D EE + G TLT+ S +F NLRF V++GA LIFD +T GPN G Q + G F+ V GG + F G+ A+ + N+RSVFYN GSI+F +++F++ + NVFR N NDG VR A F+ N F+G G A N GGT+IFR A FSD+ CDE G V N KM G+ N G + FKAAV+ + N A GG+
Sbjct: 13 ALALMA-STVRSQECDDIDAYFGDVSSVTEIDLGTIIRVDCP--SNDDAEELPYITIESGKTLTVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSG--QSEGAGDFVFDVAEGGSLTFNGKFRASQVSNVRSVFYNRGSIEFKDDSLFNN-NGNVFRSNXXXXXXXXXXXXXXXXXXXXXNDGEDSFVRFSKTATFIDNAGFFDGAWGCAIDN--GGTAIFRDDAVFSDHDCDE-GAAVSN--TGKMRFYGKAYFSDNRNYRDTGGGVLNRAVYDSDQAGDLVFKAAVQFNRNTAEYGGGI 307
BLAST of mRNA_D-herbacea_F_contig103.387.1 vs. uniprot
Match: A0A6H5J6U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6U2_9PHAE) HSP 1 Score: 117 bits (292), Expect = 6.040e-28 Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 3
Query: 159 ADCDQFKS-LPVPLTGDTTLELISANVDCPILADNDLEEFVIQGGTLTLTGSSTTKFTNLRFTVKDGAKLIFDFAMTEFGPNVGY 410
A CD +S L PLTGDTTLEL S + DCPIL DN+LEEF ++GGTLTLTG STTKFTNL+FT+ D A LIFD+ TEFGPN+GY
Sbjct: 6 ASCDDLRSALSSPLTGDTTLEL-SGDADCPILEDNELEEFTVEGGTLTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGY 89
BLAST of mRNA_D-herbacea_F_contig103.387.1 vs. uniprot
Match: A0A6H5KB90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB90_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.680e-18 Identity = 70/188 (37.23%), Postives = 101/188 (53.72%), Query Frame = 3
Query: 123 ALGLLAVSSVAWADCDQFKSLPVPLTGDTTLELISA-NVDCPILADND-LEEFVIQGG-TLTLTGS-STTKFTNLRFTVKDGAKLIFDFAMTEFGPN--VGYEQEDDYGGFMVQVESGGKVEFTGETYATNLENMRSVFYNEGSIKFGSNAVFHDCDSNVFRDNLGSLRFFGDVTFTENRYLAISNDG 668
AL L+A S+V +CD + ++ T ++L + VDCP D + L I+ G TL + S +F NLRF V++GA LIFD +T GPN V E D F+ V GG + F G+ ++ + N+RSVFYN GSI+F +++F++ + NVFR+N YLAI NDG
Sbjct: 13 ALALIA-STVRSQECDDIDAYFGDVSSVTEIDLGTIIRVDCPSTDDGEELPYITIESGKTLAVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSVVDPESASD---FVFDVAEGGSLTFNGKFRSSQVFNVRSVFYNRGSIEFKDDSLFNN-NGNVFRNNEXXXXXXXXXXXXXXXYLAIVNDG 195 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig103.387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig103.387.1 >prot_D-herbacea_F_contig103.387.1 ID=prot_D-herbacea_F_contig103.387.1|Name=mRNA_D-herbacea_F_contig103.387.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=327bp MKTFYAGALGLLAVSSVAWADCDQFKSLPVPLTGDTTLELISANVDCPILback to top mRNA from alignment at D-herbacea_F_contig103:1632..13108+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig103.387.1 ID=mRNA_D-herbacea_F_contig103.387.1|Name=mRNA_D-herbacea_F_contig103.387.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=11477bp|location=Sequence derived from alignment at D-herbacea_F_contig103:1632..13108+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig103:1632..13108+ >mRNA_D-herbacea_F_contig103.387.1 ID=mRNA_D-herbacea_F_contig103.387.1|Name=mRNA_D-herbacea_F_contig103.387.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1962bp|location=Sequence derived from alignment at D-herbacea_F_contig103:1632..13108+ (Desmarestia herbacea DmunF female)back to top |