mRNA_D-herbacea_F_contig1.127.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1.127.1
Unique NamemRNA_D-herbacea_F_contig1.127.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Match: A0A6H5K2Y9_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 6.070e-42
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:   10 GSDWSSTRKASRVECGDLFTLILTSKAELLSCGVGECVGGDGTNRKQAELVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVG 279
            G  WSS R+ASRV CGDLFTLILTS+AE+ SCGVGECVGGDG +RKQA  V SLAGFPTVWMACGN+HSVVIGAGG+A+ FGLNTHGQ+G
Sbjct:  459 GQSWSSRRRASRVACGDLFTLILTSRAEVFSCGVGECVGGDGRDRKQAAPVPSLAGFPTVWMACGNSHSVVIGAGGDALGFGLNTHGQLG 548
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BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Match: D7FWC7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 5.700e-27
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:   91 ELLSCGVGECVGGDGTNRKQAELVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVG 279
            ++ SCGVGECVGGDG +RKQA  V SLAGFPTVWMACGN+HSVVIGAGG+A+ FGLNTHGQ+G
Sbjct:   58 QVFSCGVGECVGGDGRDRKQAAPVPSLAGFPTVWMACGNSHSVVIGAGGDALGFGLNTHGQLG 120
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BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Match: UPI000D624777 (LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC6 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=UPI000D624777)

HSP 1 Score: 55.1 bits (131), Expect = 1.090e-6
Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:   28 TRKASRVECGDLFTLILTSKAELLSCGVG---ECVGGDGTNRKQAELVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVGN 282
            +R  S + CG+  T +LT    +L+ G G   +      TN      V+ L G P   +ACG NH++V+G+ G+  AFG  + GQ+G+
Sbjct:  239 SRSVSFMSCGESHTAVLTKDGNVLTFGEGSHGQLGHASRTNEVYPRQVEGLDG-PATQIACGRNHTLVLGSSGQLWAFGNGSKGQIGH 325
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BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Match: A0A6P3V6Q4_BOMIM (probable E3 ubiquitin-protein ligase HERC4 isoform X2 n=10 Tax=Bombus TaxID=28641 RepID=A0A6P3V6Q4_BOMIM)

HSP 1 Score: 54.3 bits (129), Expect = 2.030e-6
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:   43 RVECGDLFTLILTSKAELLSCGVGE----CVGGDGTNRKQAELVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVG 279
            +V CG    L LT+  EL S G        +G D  +  + +L+ +LAG P  ++ACG  HS+ I   G    +G NT GQ+G
Sbjct:  168 QVACGMKHALALTNNGELYSWGSNSEGQLGLGVDIRSEVKPKLINTLAGVPIAFIACGGYHSIAISKSGAIFGWGKNTFGQLG 250
[Close]
BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Match: A0A182M4V1_9DIPT (HECT domain-containing protein n=2 Tax=Myzomyia TaxID=59140 RepID=A0A182M4V1_9DIPT)

HSP 1 Score: 53.5 bits (127), Expect = 3.790e-6
Identity = 32/83 (38.55%), Postives = 42/83 (50.60%), Query Frame = 1 
Query:   43 RVECGDLFTLILTSKAELLSCGVGEC--VGGDGTNRKQA--ELVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVG 279
            ++  G    L LT+  EL + G      +G   TN K     LVQSLAG P  ++ACG NHS  +   G    +G NT GQ+G
Sbjct:  117 QIASGQYHCLALTNNGELYAWGSNSYGQLGIGTTNEKVPIPTLVQSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLG 199
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BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Match: A0A182Y317_ANOST (HECT domain-containing protein n=9 Tax=Cellia TaxID=44534 RepID=A0A182Y317_ANOST)

HSP 1 Score: 53.5 bits (127), Expect = 3.790e-6
Identity = 32/83 (38.55%), Postives = 42/83 (50.60%), Query Frame = 1 
Query:   43 RVECGDLFTLILTSKAELLSCGVGEC--VGGDGTNRKQA--ELVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVG 279
            ++  G    L LT+  EL + G      +G   TN K     LVQSLAG P  ++ACG NHS  +   G    +G NT GQ+G
Sbjct:  146 QIASGQYHCLALTNNGELYAWGSNSYGQLGIGTTNEKVPIPTLVQSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLG 228
[Close]
BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Match: A0A182FGC0_ANOAL (HECT domain-containing protein n=4 Tax=Nyssorhynchus TaxID=44543 RepID=A0A182FGC0_ANOAL)

HSP 1 Score: 53.5 bits (127), Expect = 3.790e-6
Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:   43 RVECGDLFTLILTSKAELLSCGVGEC--VGGDGTNRKQAE--LVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVG 279
            ++  G    L LT+  EL + G      +G   TN K +   LVQSLAG P  ++ACG NHS  +   G    +G NT GQ+G
Sbjct:  146 QIAAGHYHCLALTNSGELYAWGSNAYGQLGLGMTNEKVSTPTLVQSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLG 228
[Close]
BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Match: UPI001658BE6B (probable E3 ubiquitin-protein ligase HERC4 isoform X4 n=2 Tax=Anopheles stephensi TaxID=30069 RepID=UPI001658BE6B)

HSP 1 Score: 53.5 bits (127), Expect = 3.850e-6
Identity = 32/83 (38.55%), Postives = 42/83 (50.60%), Query Frame = 1 
Query:   43 RVECGDLFTLILTSKAELLSCGVGEC--VGGDGTNRKQA--ELVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVG 279
            ++  G    L LT+  EL + G      +G   TN K     LVQSLAG P  ++ACG NHS  +   G    +G NT GQ+G
Sbjct:  825 QIASGQYHCLALTNNGELYAWGSNSYGQLGIGTTNEKVPLPTLVQSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLG 907
[Close]
BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Match: W5JA25_ANODA (Hect E3 ubiquitin ligase n=3 Tax=Anopheles darlingi TaxID=43151 RepID=W5JA25_ANODA)

HSP 1 Score: 53.5 bits (127), Expect = 3.850e-6
Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:   43 RVECGDLFTLILTSKAELLSCGVGEC--VGGDGTNRKQAE--LVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVG 279
            ++  G    L LT+  EL + G      +G   TN K +   LVQSLAG P  ++ACG NHS  +   G    +G NT GQ+G
Sbjct:  824 QIAAGHYHCLALTNSGELYAWGSNAYGQLGLGMTNEKVSTPTLVQSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLG 906
[Close]
BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Match: UPI0016410FC4 (probable E3 ubiquitin-protein ligase HERC4 isoform X4 n=2 Tax=Anopheles albimanus TaxID=7167 RepID=UPI0016410FC4)

HSP 1 Score: 53.5 bits (127), Expect = 3.850e-6
Identity = 32/83 (38.55%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:   43 RVECGDLFTLILTSKAELLSCGVGEC--VGGDGTNRKQAE--LVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVG 279
            ++  G    L LT+  EL + G      +G   TN K +   LVQSLAG P  ++ACG NHS  +   G    +G NT GQ+G
Sbjct:  827 QIAAGHYHCLALTNSGELYAWGSNAYGQLGLGMTNEKVSTPTLVQSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLG 909
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K2Y9_9PHAE6.070e-4280.00HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FWC7_ECTSI5.700e-2779.37HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI000D6247771.090e-634.09LOW QUALITY PROTEIN: probable E3 ubiquitin-protein... [more]
A0A6P3V6Q4_BOMIM2.030e-636.14probable E3 ubiquitin-protein ligase HERC4 isoform... [more]
A0A182M4V1_9DIPT3.790e-638.55HECT domain-containing protein n=2 Tax=Myzomyia Ta... [more]
A0A182Y317_ANOST3.790e-638.55HECT domain-containing protein n=9 Tax=Cellia TaxI... [more]
A0A182FGC0_ANOAL3.790e-638.55HECT domain-containing protein n=4 Tax=Nyssorhynch... [more]
UPI001658BE6B3.850e-638.55probable E3 ubiquitin-protein ligase HERC4 isoform... [more]
W5JA25_ANODA3.850e-638.55Hect E3 ubiquitin ligase n=3 Tax=Anopheles darling... [more]
UPI0016410FC43.850e-638.55probable E3 ubiquitin-protein ligase HERC4 isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1contigD-herbacea_F_contig1:3312049..3314074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7FWC7
KEGG koko:K10587,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons3
Model size285
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1.127.1prot_D-herbacea_F_contig1.127.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1 3312049..3314074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927398.3083065-CDS-D-herbacea_F_contig1:3312048..33121411622927398.3083065-CDS-D-herbacea_F_contig1:3312048..3312141Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3312049..3312141 +
1690790147.9971302-CDS-D-herbacea_F_contig1:3312048..33121411690790147.9971302-CDS-D-herbacea_F_contig1:3312048..3312141Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3312049..3312141 +
1622927398.3239844-CDS-D-herbacea_F_contig1:3313133..33131901622927398.3239844-CDS-D-herbacea_F_contig1:3313133..3313190Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3313134..3313190 +
1690790148.0189993-CDS-D-herbacea_F_contig1:3313133..33131901690790148.0189993-CDS-D-herbacea_F_contig1:3313133..3313190Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3313134..3313190 +
1622927398.3362088-CDS-D-herbacea_F_contig1:3313939..33140741622927398.3362088-CDS-D-herbacea_F_contig1:3313939..3314074Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3313940..3314074 +
1690790148.0332742-CDS-D-herbacea_F_contig1:3313939..33140741690790148.0332742-CDS-D-herbacea_F_contig1:3313939..3314074Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1 3313940..3314074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1.127.1

>prot_D-herbacea_F_contig1.127.1 ID=prot_D-herbacea_F_contig1.127.1|Name=mRNA_D-herbacea_F_contig1.127.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=95bp
MGAGSDWSSTRKASRVECGDLFTLILTSKAELLSCGVGECVGGDGTNRKQ
AELVQSLAGFPTVWMACGNNHSVVIGAGGEAMAFGLNTHGQVGN*
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mRNA from alignment at D-herbacea_F_contig1:3312049..3314074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1.127.1 ID=mRNA_D-herbacea_F_contig1.127.1|Name=mRNA_D-herbacea_F_contig1.127.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2026bp|location=Sequence derived from alignment at D-herbacea_F_contig1:3312049..3314074+ (Desmarestia herbacea DmunF female)
ATGGGAGCTGGGAGTGATTGGTCTTCGACAAGAAAGGCGTCGAGAGTGGA
GTGCGGCGACCTGTTTACCCTAATTCTTACCTCCAAGGCCGAGGTGTGCG
TCTGTATGTATGCGTTTTTTGTGTGTGTGTTGCTGTTGTTGTTGTTGTTG
TTGTTGTTGTTTCTCACATTAACTCATCTTAAAAATCTCACCCGTGGTCA
CAAAACCCGGCACAAAACCGCCCCAGGAGGAAAATGGTTGTTGTTGCTTC
TCGTATTAGCTCATCTAAAAAAACCTCACCCGTGGTCACGAAGCCCGGCA
AAAATACCGCTCCAGAAGGGAAAACAAACTAAAAAATTAAAGCAAAATAT
ACATACGAGAAAGAGTAGTGCCCCAATGAGGGCGGGTTATTTCGCAACAA
AAAGAAAATAATAATACACAGACTCTAAAAAAGAACTTCATAAAATCACG
ACCAAAGAACCAAAAAAGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTG
TGTGTTTATCTCCCTTCCCCTTCACCGTGATAAATGGATGCCGGCTGAAC
GCCGTCACTCTCTCGAGTATGGAAAGATTTGCTTCGTTCGTGCGTTTTTT
TGTCGCCCTTCTGTGTCGATACGTGTATACTTCGAAGAAGTAGCACAAAA
GCAACGAGAGACCGCAATCACTTAGCATAAAAATGTACCCACCAGCCATA
TTAAGCTATTGTTAACAATGGTAAAGCATACAATGGTAGAAAAACTGGTG
CCTATATTTTGTTTTTTTTAATATATTTTATCTCCTATTACTACTGTCGA
ATACCATCGGCCGATAACGTATGGTAGTACTCCTGAACTCTGGTTCTCTT
ATCCTTGCAGTGTTGCTGCTCGGCGAGAGGGCGACGGGTCCGTTGGACCC
TCCCTCCCTCGCGCGACACTGTGGCAATTGCGCGTGCGTTCCCTTTCTCC
CCGAGAAACTAATGATTTGTAACGACATCCTGACCCACCCCCCCCCACCC
CCCTCTCTATCTCTGTGTTCCAAACGTCGGGCGTTTGTTGTTTTTCAATT
GTTACGCTGTGTATGTGATACTTTGCTGCGACCAGCTGCTTTCCTGTGGA
GTCGGAGAATGCGTGGGAGGTGATGGTACAAACAGGAAACAGGTGTGAAA
TCGCTTCATGTGTGAGTGTTTTTAACTTTTAAAGCGGCAAAGCAAGGAGT
ACGATAGTGGCCATCAAAAATCAAAACGTACGTTTGTTGCATGACCTCTG
CGGCGTAGTAGACGTTAGGCCCTCGAGGCGAAAAAATTGTCCTCAACACA
GGAAATGCATATCAAGAGATATACTTTTCCCAGTGCGGCCCAATGCTGGA
ATGTGTCTTCTTGGTTCCGATACAATTAACTGTGTTTTTTAGAAGACGTT
ATTAGACGATTCAACTGCATTATACGATTCCCACCAAAAACAATTACAGC
ATCTACGCGAGGTGTTGGCACCCGTCCGATGCTTGTTTGTGTGTGTGTAC
GTGTTTGTGCGCATAGCGCTGTCCCGTCCACAGTCTGCCCCGGGAGATAC
GGCGGTGCTTGCTTTACTACTTTTGTTGTTATTGTTGTTGTGTGTAGGTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCCGATGTTCCTGTTGCTGCT
CCTACTAATTTTCTTTCTGCCTGATTCATTGCACTTTGATTTTCGTTGCC
AGGGTCGTCTTCCTCGACTTGATTATCGCCGTTGTTGTTGTCGTTGCTTT
TGTTGATGCTGCTGCTGTTGTTGTTGTTGTTGTTGTCTTGTTCGGCACCG
CAATCAGTCCACTTGTTACAATTGCAATAAAGGCGGCCACTACCAAGTTT
CACATGCCCCCTCGAAATGTTTGTTTCGCTGAGGGGCGCAGGCTGAGCTC
GTGCAGTCTCTAGCGGGGTTTCCCACGGTGTGGATGGCGTGCGGAAATAA
TCACTCTGTCGTCATTGGCGCTGGAGGGGAGGCGATGGCGTTCGGGCTCA
ACACCCACGGCCAGGTGGGGAACTAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1:3312049..3314074+

>mRNA_D-herbacea_F_contig1.127.1 ID=mRNA_D-herbacea_F_contig1.127.1|Name=mRNA_D-herbacea_F_contig1.127.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=570bp|location=Sequence derived from alignment at D-herbacea_F_contig1:3312049..3314074+ (Desmarestia herbacea DmunF female)
ATGGGAGCTGGGAGTGATTGGTCTTCGACAAGAAAGGCGTCGAGAGTGGA
GTGCGGCGACCTGTTTACCCTAATTCTTACCTCCAAGGCCGAGATGGGAG
CTGGGAGTGATTGGTCTTCGACAAGAAAGGCGTCGAGAGTGGAGTGCGGC
GACCTGTTTACCCTAATTCTTACCTCCAAGGCCGAGCTGCTTTCCTGTGG
AGTCGGAGAATGCGTGGGAGGTGATGGTACAAACAGGAAACAGCTGCTTT
CCTGTGGAGTCGGAGAATGCGTGGGAGGTGATGGTACAAACAGGAAACAG
GCTGAGCTCGTGCAGTCTCTAGCGGGGTTTCCCACGGTGTGGATGGCGTG
CGGAAATAATCACTCTGTCGTCATTGGCGCTGGAGGGGAGGCGATGGCGT
TCGGGCTCAACACCCACGGCCAGGTGGGGAACTAGGCTGAGCTCGTGCAG
TCTCTAGCGGGGTTTCCCACGGTGTGGATGGCGTGCGGAAATAATCACTC
TGTCGTCATTGGCGCTGGAGGGGAGGCGATGGCGTTCGGGCTCAACACCC
ACGGCCAGGTGGGGAACTAG
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