mRNA_D-dudresnayi_contig10451.489.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10451.489.1
Unique NamemRNA_D-dudresnayi_contig10451.489.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10451.489.1 vs. uniprot
Match: D7G7L2_ECTSI (G-patch_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L2_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.400e-16
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = 2 
Query:  269 MKSSKPKNGFSMSLSKGKPPN-----AKG-QRSDSGNTKRS--AIGDTHGEDDDASAAPRKDFVTGIGGGKVVTREITVDRGPRVIALATNPWERAAAEAAAA 553
            M SSKPK GFSMSL K K  +     AKG  R+ SG +K S  AIG  H ++D      ++D+VTGIGGGKVVT+E+ VDRGPRVIALA+NPW   +  AAAA
Sbjct:    1 MASSKPKKGFSMSLGKPKQSSSSATSAKGPDRATSGGSKSSTSAIGVAHDDEDAGGRGGKRDYVTGIGGGKVVTKEVVVDRGPRVIALASNPWANGSNAAAAA 103
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10451.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L2_ECTSI1.400e-1656.31G-patch_2 domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10451contigD-dudresnayi_contig10451:3136..3727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.6e-15
Seed eggNOG ortholog2880.D7G7L2
Preferred nameGPKOW
KEGG rclassRC00010
KEGG koko:K10798,ko:K13101,ko:K13566
KEGG ReactionR00269,R00348
KEGG Pathwayko00250,ko03410,ko04210,ko04212,ko04214,ko04217,map00250,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
GOsGO:0000375,GO:0000377,GO:0000398,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009870,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.defense response signaling pathway, resistance gene-dependent
EggNOG OGsKOG4315@1,KOG4315@2759
EC2.4.2.30,3.5.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size592
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.2682145-UTR-D-dudresnayi_contig10451:3135..34031622927546.2682145-UTR-D-dudresnayi_contig10451:3135..3403Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10451 3136..3403 +
1690556801.4341993-UTR-D-dudresnayi_contig10451:3135..34031690556801.4341993-UTR-D-dudresnayi_contig10451:3135..3403Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10451 3136..3403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.281443-CDS-D-dudresnayi_contig10451:3403..37271622927546.281443-CDS-D-dudresnayi_contig10451:3403..3727Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10451 3404..3727 +
1690556801.4437706-CDS-D-dudresnayi_contig10451:3403..37271690556801.4437706-CDS-D-dudresnayi_contig10451:3403..3727Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10451 3404..3727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10451.489.1prot_D-dudresnayi_contig10451.489.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10451 3404..3727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10451.489.1

>prot_D-dudresnayi_contig10451.489.1 ID=prot_D-dudresnayi_contig10451.489.1|Name=mRNA_D-dudresnayi_contig10451.489.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=108bp
MKSSKPKNGFSMSLSKGKPPNAKGQRSDSGNTKRSAIGDTHGEDDDASAA
PRKDFVTGIGGGKVVTREITVDRGPRVIALATNPWERAAAEAAAAAADRA
KASSSFAR
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mRNA from alignment at D-dudresnayi_contig10451:3136..3727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10451.489.1 ID=mRNA_D-dudresnayi_contig10451.489.1|Name=mRNA_D-dudresnayi_contig10451.489.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=592bp|location=Sequence derived from alignment at D-dudresnayi_contig10451:3136..3727+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGCGAGTAGGCTTCGTGACCGTCCCTGCTACTGTTGTAGTGAAAAGTTTG
GTTTGTCACCAGCAAGGGCTGGCAACAACCTATTCACCAGCCCCAAGGAA
GAGAAAGCCAGCCAACAAACAACACATCCAACTGGAGAACGACGCAGGAA
GTGTCATAGCATCTCGGAGGTCATAGCCAGTAGCGTTCAAAGCAGCCTTC
CCTAGAGCTGCTGACGCCAGCGACCACCGACGTGTGCTGCTGGGCTGTGT
TGCCTCCAGACGAGATCCATGAAGAGCTCCAAGCCTAAGAATGGATTCTC
CATGTCCTTGAGCAAGGGCAAACCTCCAAATGCGAAGGGCCAAAGGTCGG
ACTCGGGCAACACAAAACGTTCCGCCATAGGCGACACGCACGGCGAGGAT
GATGATGCTTCGGCGGCACCTCGAAAGGACTTCGTTACCGGCATTGGTGG
GGGTAAGGTGGTCACTAGGGAAATAACCGTGGACAGAGGGCCTCGCGTAA
TCGCCCTGGCGACCAACCCTTGGGAACGCGCCGCAGCGGAAGCTGCTGCA
GCGGCCGCCGACAGAGCAAAAGCGTCGTCTTCTTTTGCTCGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10451:3136..3727+

>mRNA_D-dudresnayi_contig10451.489.1 ID=mRNA_D-dudresnayi_contig10451.489.1|Name=mRNA_D-dudresnayi_contig10451.489.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at D-dudresnayi_contig10451:3136..3727+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAGAGCTCCAAGCCTAAGAATGGATTCTCCATGTCCTTGAGCAAGGG
CAAACCTCCAAATGCGAAGGGCCAAAGGTCGGACTCGGGCAACACAAAAC
GTTCCGCCATAGGCGACACGCACGGCGAGGATGATGATGCTTCGGCGGCA
CCTCGAAAGGACTTCGTTACCGGCATTGGTGGGGGTAAGGTGGTCACTAG
GGAAATAACCGTGGACAGAGGGCCTCGCGTAATCGCCCTGGCGACCAACC
CTTGGGAACGCGCCGCAGCGGAAGCTGCTGCAGCGGCCGCCGACAGAGCA
AAAGCGTCGTCTTCTTTTGCTCGGATGAAGAGCTCCAAGCCTAAGAATGG
ATTCTCCATGTCCTTGAGCAAGGGCAAACCTCCAAATGCGAAGGGCCAAA
GGTCGGACTCGGGCAACACAAAACGTTCCGCCATAGGCGACACGCACGGC
GAGGATGATGATGCTTCGGCGGCACCTCGAAAGGACTTCGTTACCGGCAT
TGGTGGGGGTAAGGTGGTCACTAGGGAAATAACCGTGGACAGAGGGCCTC
GCGTAATCGCCCTGGCGACCAACCCTTGGGAACGCGCCGCAGCGGAAGCT
GCTGCAGCGGCCGCCGACAGAGCAAAAGCGTCGTCTTCTTTTGCTCGG
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