mRNA_D-dudresnayi_contig9997.28807.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9997.28807.1
Unique NamemRNA_D-dudresnayi_contig9997.28807.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 4.590e-29
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 LLEFWANEGRPLYPNMTRVARVLLSVPTSSAFLERDFGTAGRLITGARSRLSAAYAEVVLFLNGNREYI 207
            LLEFWA EG+ LYPNM R ARVLLSVP SSA LERDF TAGRLITGARSRLSAAY E+VLFLNGN+EYI
Sbjct:  712 LLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYI 780          
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.690e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 LLEFWANEGRP-LYPNMTRVARVLLSVPTSSAFLERDFGTAGRLITGARSRLSAAYAEVVLFLNGNREYI 207
            +L FW  +     +  +  VARVL S+P+SSA +ERDFGTAGR++T  RS L+    ++  FLN NR Y+
Sbjct:   23 VLSFWKRQQEQGNFRLLPLVARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYV 92          
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Match: A0A080YX20_PHYPR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080YX20_PHYPR)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-10
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 LLEFWANEGRP-LYPNMTRVARVLLSVPTSSAFLERDFGTAGRLITGARSRLSAAYAEVVLFLNGNREYI 207
            +LEFW  +     Y  + +V R+L ++PTSSA +ERDFGTAG+L+T  R  ++    ++  FLN NR+++
Sbjct:   83 ILEFWQRQAASNTYTFLPQVVRILFAIPTSSAQIERDFGTAGQLVTPQRGSIAPYNVDMSAFLNCNRQFV 152          
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Match: A0A0W8D5H4_PHYNI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D5H4_PHYNI)

HSP 1 Score: 60.5 bits (145), Expect = 2.050e-9
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 LLEFWANEGRP-LYPNMTRVARVLLSVPTSSAFLERDFGTAGRLITGARSRLSAAYAEVVLFLNGNREYI 207
            +L +W  +     +  +  VARVL S+P+SSA +ERDFGTAGR++T  RS L     ++ ++LN NR Y+
Sbjct:  139 VLSYWKRQQEQGNFQLLPLVARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNRSYV 208          
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Match: V9F663_PHYPR (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=V9F663_PHYPR)

HSP 1 Score: 59.7 bits (143), Expect = 3.950e-9
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 LLEFWANEGRP-LYPNMTRVARVLLSVPTSSAFLERDFGTAGRLITGARSRLSAAYAEVVLFLNGNREYI 207
            +LEFW  +     Y  + +V R+L ++PTSSA +ERDFGTAG+L+T  R  ++    ++  FLN N +++
Sbjct:   87 ILEFWQRQAASNTYTFLPQVVRILFAIPTSSAQIERDFGTAGQLVTPQRGSIAPYNVDMSAFLNCNWQFV 156          
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Match: W2JRK8_PHYPR (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JRK8_PHYPR)

HSP 1 Score: 60.5 bits (145), Expect = 4.850e-9
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 LLEFWANEGRP-LYPNMTRVARVLLSVPTSSAFLERDFGTAGRLITGARSRLSAAYAEVVLFLNGNREYI 207
            +L +W  +     +  +  VARVL S+P+SSA +ERDFGTAGR++T  RS L     ++ ++LN NR Y+
Sbjct:  445 VLSYWKRQQEQGNFQLLPLVARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNRSYV 514          
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Match: W2QQF5_PHYPN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QQF5_PHYPN)

HSP 1 Score: 59.7 bits (143), Expect = 8.990e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   55 VARVLLSVPTSSAFLERDFGTAGRLITGARSRLSAAYAEVVLFLNGNREYI 207
            VARVL S+P+SSA +ERDFGTAGR++T  RS L     ++ ++LN NR Y+
Sbjct:  386 VARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNRSYV 436          
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 58.9 bits (141), Expect = 9.620e-9
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 LLEFWANEGRPLYPNMTRVARVLLSVPTSSAFLERDFGTAGRLITGARSRLSAAYAEVVLFLNGN 195
            LL +W  E   ++P++ R+AR +LS+P +SA  ERDF TAG +I+  RS+LS    + VLFL+ N
Sbjct:  170 LLNWW-KEHSEMFPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233          
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Match: W2PE29_PHYPN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PE29_PHYPN)

HSP 1 Score: 58.2 bits (139), Expect = 9.680e-9
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   55 VARVLLSVPTSSAFLERDFGTAGRLITGARSRLSAAYAEVVLFLNGNREYI 207
            VARVL S+P+SSA +ERDFG AGR++T  RS L+    ++  FLN NR Y+
Sbjct:   71 VARVLFSMPSSSAQIERDFGAAGRMVTPQRSSLAPYNVDMATFLNCNRSYV 121          
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 57.0 bits (136), Expect = 9.910e-9
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   55 VARVLLSVPTSSAFLERDFGTAGRLITGARSRLSAAYAEVVLFLNGNREYI 207
            VARV+ S+P+SSA +ERDFGTAGR++T  R+ L++   ++  FLN NR Y+
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYV 60          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9997.28807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE4.590e-2984.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA4.690e-1145.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A080YX20_PHYPR1.340e-1041.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A0W8D5H4_PHYNI2.050e-942.86Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ph... [more]
V9F663_PHYPR3.950e-940.00Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ph... [more]
W2JRK8_PHYPR4.850e-942.86Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ph... [more]
W2QQF5_PHYPN8.990e-954.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
UPI0019661A939.620e-946.15zinc finger BED domain-containing protein DAYSLEEP... [more]
W2PE29_PHYPN9.680e-954.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
H3GTQ6_PHYRM9.910e-952.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9997contigD-dudresnayi_contig9997:8745..8951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.2944243-CDS-D-dudresnayi_contig9997:8744..89511622930964.2944243-CDS-D-dudresnayi_contig9997:8744..8951Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9997 8745..8951 +
1690557982.0415835-CDS-D-dudresnayi_contig9997:8744..89511690557982.0415835-CDS-D-dudresnayi_contig9997:8744..8951Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9997 8745..8951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9997.28807.1prot_D-dudresnayi_contig9997.28807.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9997 8745..8951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9997.28807.1

>prot_D-dudresnayi_contig9997.28807.1 ID=prot_D-dudresnayi_contig9997.28807.1|Name=mRNA_D-dudresnayi_contig9997.28807.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=69bp
LLEFWANEGRPLYPNMTRVARVLLSVPTSSAFLERDFGTAGRLITGARSR
LSAAYAEVVLFLNGNREYI
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mRNA from alignment at D-dudresnayi_contig9997:8745..8951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9997.28807.1 ID=mRNA_D-dudresnayi_contig9997.28807.1|Name=mRNA_D-dudresnayi_contig9997.28807.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at D-dudresnayi_contig9997:8745..8951+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTTCTCGAGTTCTGGGCCAACGAAGGGCGGCCGCTCTACCCCAACATGAC GCGTGTTGCTCGAGTTCTGTTGTCTGTGCCGACGTCTTCTGCCTTCCTCG AGAGGGACTTCGGCACCGCTGGGCGTCTCATCACCGGGGCCCGCAGTAGG CTTTCCGCGGCGTATGCTGAGGTGGTGTTGTTCCTTAACGGGAACCGGGA GTACATC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9997:8745..8951+

>mRNA_D-dudresnayi_contig9997.28807.1 ID=mRNA_D-dudresnayi_contig9997.28807.1|Name=mRNA_D-dudresnayi_contig9997.28807.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at D-dudresnayi_contig9997:8745..8951+ (Desmarestia dudresnayi DdudBR16 monoicous)
CTTCTCGAGTTCTGGGCCAACGAAGGGCGGCCGCTCTACCCCAACATGAC
GCGTGTTGCTCGAGTTCTGTTGTCTGTGCCGACGTCTTCTGCCTTCCTCG
AGAGGGACTTCGGCACCGCTGGGCGTCTCATCACCGGGGCCCGCAGTAGG
CTTTCCGCGGCGTATGCTGAGGTGGTGTTGTTCCTTAACGGGAACCGGGA
GTACATCCTTCTCGAGTTCTGGGCCAACGAAGGGCGGCCGCTCTACCCCA
ACATGACGCGTGTTGCTCGAGTTCTGTTGTCTGTGCCGACGTCTTCTGCC
TTCCTCGAGAGGGACTTCGGCACCGCTGGGCGTCTCATCACCGGGGCCCG
CAGTAGGCTTTCCGCGGCGTATGCTGAGGTGGTGTTGTTCCTTAACGGGA
ACCGGGAGTACATC
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