mRNA_D-dudresnayi_contig9999.28808.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig9999.28808.1
Unique NamemRNA_D-dudresnayi_contig9999.28808.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig9999.28808.1 vs. uniprot
Match: A0A6H5L742_9PHAE (ENDO3c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L742_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.480e-23
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:  334 SSVVMVQVPEDFSFAQAACSYGYYLVPPNRWEPCKKNPDDRDAGTFSRPLRFGERLAKTALCVISQV 534
            SSVVMV+VP+ FSF QAACSYGY++VPPN W+PC+  P  RD+GTFSRPLRFG+RL  TA C IS V
Sbjct:   79 SSVVMVKVPQGFSFTQAACSYGYFVVPPNLWQPCESAPGLRDSGTFSRPLRFGQRLVNTAKCTISLV 145
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BLAST of mRNA_D-dudresnayi_contig9999.28808.1 vs. uniprot
Match: A0A0G4H2A2_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H2A2_VITBC)

HSP 1 Score: 55.8 bits (133), Expect = 6.810e-6
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:  280 QRSLCTEGKEKRTDGTSASSV-VMVQVPEDFSFAQAACSYGYYLVPPNRWEPCKKNPD-DRDAGTFSRPLRFGER 498
            Q S  T     ++D +S   V V + V +DF  A++ CSYG++++ PN+W  C   P    D G F RPLR+GE+
Sbjct:   16 QSSQSTTDGSTQSDSSSLREVSVTIDVADDFDLAKSICSYGFFVLAPNKW--CPPPPSLSTDHGVFKRPLRYGEK 88
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig9999.28808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L742_9PHAE2.480e-2370.15ENDO3c domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A0G4H2A2_VITBC6.810e-638.67Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig9999contigD-dudresnayi_contig9999:512..4519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue2.3e-19
Seed eggNOG ortholog2880.D8LSL8
EggNOG OGs2CN7D@1,2QUBQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size562
Cds size561
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig9999.28808.1prot_D-dudresnayi_contig9999.28808.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig9999 513..4519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.3527403-CDS-D-dudresnayi_contig9999:512..5881622930964.3527403-CDS-D-dudresnayi_contig9999:512..588Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9999 513..588 -
1690557982.0543945-CDS-D-dudresnayi_contig9999:512..5881690557982.0543945-CDS-D-dudresnayi_contig9999:512..588Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9999 513..588 -
1622930964.3744242-CDS-D-dudresnayi_contig9999:1736..18291622930964.3744242-CDS-D-dudresnayi_contig9999:1736..1829Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9999 1737..1829 -
1690557982.0693114-CDS-D-dudresnayi_contig9999:1736..18291690557982.0693114-CDS-D-dudresnayi_contig9999:1736..1829Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9999 1737..1829 -
1622930964.3877873-CDS-D-dudresnayi_contig9999:4127..45191622930964.3877873-CDS-D-dudresnayi_contig9999:4127..4519Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9999 4128..4519 -
1690557982.0802438-CDS-D-dudresnayi_contig9999:4127..45191690557982.0802438-CDS-D-dudresnayi_contig9999:4127..4519Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig9999 4128..4519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig9999.28808.1

>prot_D-dudresnayi_contig9999.28808.1 ID=prot_D-dudresnayi_contig9999.28808.1|Name=mRNA_D-dudresnayi_contig9999.28808.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=187bp
TTDVRRLLHDAEDDTMSARRPSSRIAFSSSLKQAATESPSSAGIAATASR
VKRRRTDTPPNHAIGKNNDVPSTIDTKLDCNIDSSGVIGGDTQQRSLCTE
GKEKRTDGTSASSVVMVQVPEDFSFAQAACSYGYYLVPPNRWEPCKKNPD
DRDAGTFSRPLRFGERLAKTALCVISQVTEGVGGGGG
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mRNA from alignment at D-dudresnayi_contig9999:512..4519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig9999.28808.1 ID=mRNA_D-dudresnayi_contig9999.28808.1|Name=mRNA_D-dudresnayi_contig9999.28808.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4008bp|location=Sequence derived from alignment at D-dudresnayi_contig9999:512..4519- (Desmarestia dudresnayi DdudBR16 monoicous)
ACCACAGACGTGCGTAGACTGCTTCACGACGCCGAAGACGACACCATGTC
CGCAAGGCGCCCATCCAGTCGCATAGCCTTCTCTTCCTCTTTGAAACAAG
CCGCTACTGAATCTCCCAGTAGTGCCGGTATAGCAGCCACGGCCTCTCGA
GTGAAGAGACGCAGGACAGATACCCCACCAAACCATGCTATTGGTAAGAA
CAATGATGTTCCCTCGACTATAGATACGAAGCTCGACTGCAACATCGACA
GCAGCGGTGTCATTGGCGGAGATACGCAGCAGCGATCATTGTGTACGGAG
GGGAAAGAGAAAAGAACCGATGGAACTTCCGCTTCTTCTGTGGTGATGGT
GCAGGTGCCCGAGGATTTCTCTTTCGCGCAAGCAGCTTGCAGGTGACCAT
TTGCGCCATTTTTACCATCCTGCATCGCTCTTGTCAACAGAGCAGTAGTA
TTCATACGCTTGTTCTTGTTGACCCCCTGCCTGGCGATCTGTGAGATGCA
GCAGAGTTGCCATGCTGTCCATTGTTTCTGAGAAAGCGTTTGATATCGAC
AGGTACATAGCTATGATGCTGGTGCCCTACACCAGAGCTAAAGTGTTTTG
TGAGGTTTGATGTCGGTGTTCGTGGATCCGGTCCAAAAGCGAACACAAAG
TACAGTACTACTGTATTCACACTACTGTAGACGGTACGAAGCACTATGAT
AAGAGCTCTGCCAGGATAATACTGTCTGTTTAGTTGTCGTGTTGTTGCGG
CCACAGCGTTGTCCGCCCTTAGTATGACGTGTACGCGGTTGCCTTATACT
CCCTAAGTACTCTGTTTATCAGTTAACAAGGTACAGAGGTGCGCCCAGAT
GACAGGGATGCGCCGGCAGCAGTGCACTACCATATCATAGGATCTCTCGG
TGGTGCTGACCCAAAGCTGCTGTTGTTCAGTACCCTAGTTCATATCGCGT
GCTTCTGTCGCATCATCTACGCTATACTCGCCCTTGCTTAACAGATCACC
GACTACAACAAGCTTACTACTACTGTTGTTGTCCATACTGTAGTAGTAGT
AGTAGTGTGGAAATTATTAATAGCACAAGGGTCTACTGCTACTGCGATCT
TTCCACCGATATTTAGGGCCATCCAGTTGTTGCGCGAACGTCAGCTCGGT
CAAAAGCGGATGATTAGTCTTGCCGCGATTTTGTTTTCGCGCCGTTTCAT
CTCGCGGAAACGGCGCTCGGTGTTTGTTCGTATCATATGATAAAACAACA
GTAGTAGTAGTATCATACGTACGAGTAGTAGTAGTAGTAGTATCATAGTA
GTAGGTTTCGAGCACACAGCACACAGCATGTGTGTTCCCTCCATTACACT
CTCCTTTCGTTGTTTTGCACACAACAATACGTTTGTTCCGAATCCCCTTT
ACTGATGGACGGACAGCATCGCTGTCTGCAGTGTGGCAAGTCCGTGCTAT
CACGTGTCATATTTGGGTGGTAAGCCCGCTTTCAGAAGAAGAGCGCATGG
CATACGATTCTGAAGCGAACAAAGGAGGGTGATGTCAGACTTACTGCCCC
TCTCCCTCTATTTGTATTGCCTGTTCTACTTACTGTTTTGTACCATACGC
GTTCGTTTGCGTCCTTTTTGCCTATAAGACGGAGACGTCGCCGTGTTTTC
AATTGACACGTAAAATTGCTGTTTTCATTTTCCCACCTATCAAGGTGTGG
CGTTTTGCCCTCCTTACCAGTAAAAACCCTAAAGCGACCGCGATGTGTGT
TCGAAGGCGCAACGGAGGGTTTGAAGATGTAGTCTATGCTATGATAGTAC
AATAGTGCACGTAGAAACCATTTTTTTTTGCTCTACACAACTCGATGAAA
GTCGACGAGGGAAGCAATGGCTGCACCCTTCTTGCGATAACAATGTGTAG
GCACGTGCCGCAGTGGCGAGGGGGGAGGGGTGCCTGCTATGTGACCCCGG
ATCTGAGTTACGACGAGATATTGAGCTGGAGAAAGAATAGGGCGAAGATA
ATGCATGGGACGGAACAAAAAACAAAAATGATCATCGTATCATAGTTGCC
CCTGTTGGCGGAAGTTCGGAGTTTCGAATCCCGACGTGACAACAAAATGG
CACTTTTCTGTGCCATCGTCCGTCGCGGAAAGCGCGAGAGATCGAGTAAG
CGCAGTTCGAGGAAAACCGATGAGCTATGGGAGTGCCACATACCCTGTGC
ACGACGAAAACCGAGGCATGTACTGGGGGTGCTCAGATCGGACTATTGGG
TGTGTTGGCCTGACCAGATAAACAATAAGTTCAGCCGACCGTCGTTCCAT
TATGTTTTTATCCGTCGCATCAATGCAGATACACCAGGGTGACATGCGCA
TGCATGCAGACTCCCTGTGCTAACACATGGTTCCGCGTGGCGGGTGCAAC
GGCTTCAATACATGCTTCTTTGTGCTGAAGCTACCAAAATTCAAGATAAA
TAAACAACGAAAACACCATTCGAAATTATATTTCCAGGAACAGTAGTAGT
TGCCGATCAACCCTCTACTATCCAACACCTTGTTTCTTGATGTCTTCCAT
CAAACCAATGGCCTTTTACTTGGACCGGATTGATAGCTTTTGTGTCGATC
CTCGATGACGTTCGTTCTTTCGCTTGTTGTACAAATGGCCATGTGGCGTG
TTTTTTGTATTTGTTTTTGTTTGTGAAACGGCGACGATAGCTACGGGTAC
TACCTGGTCCCGCCGAACCGATGGGAGCCGTGCAAGAAAAATCCCGATGA
CAGAGACGCCGGGACGTTCAGTCGTCCGCTGAGGTAAGTAACTCCGCGAC
TTAAATACACGGAGGCATCTTTAAAGCTCCGAAAAAGTGGTTTGGGAACA
GCTGTTTTTTATGTTTTATTTTTATTGACAAATACTTTTTTTGTTTTTTC
ATGTTACAAATCCGTCAGCCGTGACAAACTGGTCCAGGATCCAAGGGATG
TTTCCCCCCACAGATCCGACTGCGTTATCCCCATTGACCGCGCGTCTCCG
AGGCAAGGTGATGCGGGTATCGGGCGGTGTGTTTCCATATATATATAGTA
GGGGGCGAACTATACCACCCGCAGCGCGATCACCACGTTCTTTTGCGTTA
AGAACTGCCAACAGGAAAACGTTAAAAAACCTTGTCCTTGTCCAAGGGAA
TCCTTCCCTCGGCACACGTGCCACTCTTTTTTGTCCGAATGAAGCCGTTT
TCGAACCTTATTTATGCCCAACTTCTCCCTATCGGTAGTTTGGCTTGGCG
GAAACAAAATGACAAATCACAAATTTCGGTTACTCCCTTATTATACAAGG
TGGCATTCTCCTTCTGCGTGGATTAGCTATCCTTCGTACCGGAGAAGGGA
GGGGGGTATTCTCATTTCATGCATGGCCGTAGTCGTATGACCGTAGACCC
TCGCATCCCAACTATGCCGGGACGGAGCACGTCGGGTTTTCACCGACCAG
GCAGACATCGCGTGCACCACGCGCAAAGCGCCGTGAGGTGTTCGGCGATT
CGTATGAAGGGTGAGCTGCATCCTACTAATAACCACATTGGAATGCGGAC
TTTGTTGCATATGGATGACAGCTTCGAAGGAACCGTTTATTTTCTGGTGT
GGCCACTTCCAGAGACAGCCATGGGGTCTACTATGTAACTGCCTTGTGGG
TGCCTTACCATATATACACTACGTGATATCATCCCACTTGCGCGGAGTTC
AGGTTCCCCATCCCGCAAAATATGATCTAACTCGACAACCAGCAATACCG
CCAAAAAAACAAGGAAAAAAACGGTACCGTGGTTGTCTAGCTCACGTAGC
GAGTGACCCGTTTTACAGCGTCGTCATCAACCGATGCCAACTCCAACAGG
TGGAGGGGCGGTATATTTAGCGAACAGGCCTAAATTCAGCTTTTCATGAT
ACCCCCCCCCCCCCATCATTGTTGTGACTAGGTTCGGCGAGCGCTTGGCC
AAAACGGCGCTTTGCGTCATCTCCCAAGTGACGGAAGGAGTAGGAGGAGG
AGGAGGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig9999:512..4519-

>mRNA_D-dudresnayi_contig9999.28808.1 ID=mRNA_D-dudresnayi_contig9999.28808.1|Name=mRNA_D-dudresnayi_contig9999.28808.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at D-dudresnayi_contig9999:512..4519- (Desmarestia dudresnayi DdudBR16 monoicous)
ACCACAGACGTGCGTAGACTGCTTCACGACGCCGAAGACGACACCATGTC
CGCAAGGCGCCCATCCAGTCGCATAGCCTTCTCTTCCTCTTTGAAACAAG
CCGCTACTGAATCTCCCAGTAGTGCCGGTATAGCAGCCACGGCCTCTCGA
GTGAAGAGACGCAGGACAGATACCCCACCAAACCATGCTATTGGTAAGAA
CAATGATGTTCCCTCGACTATAGATACGAAGCTCGACTGCAACATCGACA
GCAGCGGTGTCATTGGCGGAGATACGCAGCAGCGATCATTGTGTACGGAG
GGGAAAGAGAAAAGAACCGATGGAACTTCCGCTTCTTCTGTGGTGATGGT
GCAGGTGCCCGAGGATTTCTCTTTCGCGCAAGCAGCTTGCAGACCACAGA
CGTGCGTAGACTGCTTCACGACGCCGAAGACGACACCATGTCCGCAAGGC
GCCCATCCAGTCGCATAGCCTTCTCTTCCTCTTTGAAACAAGCCGCTACT
GAATCTCCCAGTAGTGCCGGTATAGCAGCCACGGCCTCTCGAGTGAAGAG
ACGCAGGACAGATACCCCACCAAACCATGCTATTGGTAAGAACAATGATG
TTCCCTCGACTATAGATACGAAGCTCGACTGCAACATCGACAGCAGCGGT
GTCATTGGCGGAGATACGCAGCAGCGATCATTGTGTACGGAGGGGAAAGA
GAAAAGAACCGATGGAACTTCCGCTTCTTCTGTGGTGATGGTGCAGGTGC
CCGAGGATTTCTCTTTCGCGCAAGCAGCTTGCAGCTACGGGTACTACCTG
GTCCCGCCGAACCGATGGGAGCCGTGCAAGAAAAATCCCGATGACAGAGA
CGCCGGGACGTTCAGTCGTCCGCTGAGCTACGGGTACTACCTGGTCCCGC
CGAACCGATGGGAGCCGTGCAAGAAAAATCCCGATGACAGAGACGCCGGG
ACGTTCAGTCGTCCGCTGAGGTTCGGCGAGCGCTTGGCCAAAACGGCGCT
TTGCGTCATCTCCCAAGTGACGGAAGGAGTAGGAGGAGGAGGAGGGGTTC
GGCGAGCGCTTGGCCAAAACGGCGCTTTGCGTCATCTCCCAAGTGACGGA
AGGAGTAGGAGGAGGAGGAGGG
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