mRNA_D-dudresnayi_contig975.28543.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig975.28543.1
Unique NamemRNA_D-dudresnayi_contig975.28543.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.720e-42
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 1
Query:   31 RTSPPMPTQLSALLRRSALNVTRDPYLACLHIVLTLCVGLVVGSLFKDLKRLNGSTAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMALFLHERASGAYGAA 339
            R  PP+ TQLSALL+R+++NV RDPYLA LHIVLT+ VG+V GSLF+DL RLNG TAGVQDRLGVVFLLLL+LSLLCLTSLAAWRKQM LF+HERASGAYGAA
Sbjct: 1784 RPPPPVCTQLSALLQRASINVARDPYLAGLHIVLTVFVGVVFGSLFRDLGRLNGCTAGVQDRLGVVFLLLLFLSLLCLTSLAAWRKQMTLFVHERASGAYGAA 1886          
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Match: A0A6H5L0D0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D0_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 3.130e-33
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 1
Query:   25 LVRTSPPMPTQLSALLRRSALNVTRDPYLACLHIVLTLCVGLVVGSLFKDLKRLNGSTAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMALFLHERASGAYGA 336
            L+  +PP+ TQL AL+ R+  +V RDPYLA LH+VLT  VGL+VGSLF DL+  N  TAG+Q RLGVVF LLL LS LCLTSLA+W +QM+LF HER SGAYGA
Sbjct:   48 LLAWTPPVTTQLRALMGRAVRDVARDPYLATLHLVLTPLVGLLVGSLFGDLRHDNDQTAGIQGRLGVVFFLLLLLSFLCLTSLASWVRQMSLFRHERESGAYGA 151          
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.380e-32
Identity = 69/105 (65.71%), Postives = 83/105 (79.05%), Query Frame = 1
Query:   25 LVRTSPPMPTQLSALLRRSALNVTRDPYLACLHIVLTLCVGLVVGSLFKDLKRLNGSTAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMALFLHERASGAYGAA 339
            L+  +PP+ TQL AL+ R+  +V RDPYLA LH+VLT  VGL+VGSLF DL+R N  TAG+Q RLGV+F LLL LS LCLTSLA+W +QM+LF HER SGAYGAA
Sbjct: 1707 LLAWAPPVTTQLRALMGRAVRDVARDPYLATLHLVLTPLVGLLVGSLFGDLRRDNDQTAGIQGRLGVIFFLLLLLSFLCLTSLASWVRQMSLFRHERESGAYGAA 1811          
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Match: C1MIB0_MICPC (ATP-binding cassette superfamily n=3 Tax=Micromonas pusilla TaxID=38833 RepID=C1MIB0_MICPC)

HSP 1 Score: 81.6 bits (200), Expect = 1.020e-15
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   49 PTQLSALLRRSALNVTRDPYLACLHIVLTLCVGLVVGSLFKDLKRLNGSTAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMALFLHERASGAYG 333
            P Q+ ALLRR   NV R P+L  LH V T    L +G +F    +    T G+Q+R+G +F +LLYL+L+ L+SL  WR+   LFL ERASGAYG
Sbjct: 1675 PRQVRALLRRMVRNVRRHPFLILLHFVATGVASLGLGGVFFAAGK---DTGGIQNRMGCLFFILLYLALMSLSSLPVWREDRLLFLRERASGAYG 1766          
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Match: A0A835W233_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W233_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 1.900e-15
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   37 SPPMPTQLSALLRRSALNVTRDPYLACLHIVLTLCVGLVVGSLFKDLKRLNGS-TAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMALFLHERASGAYG 333
            SPP   QL AL  R   N  R P+   L+   TL V + +G +FK+    +G+ TAG+Q+RLGV+F +LLYLSL+ L+SL  WR +  LF+ ERASG YG
Sbjct:  855 SPPYLLQLRALSVRLLRNTYRHPFSVALNFAATLAVAVCLGLIFKN----SGTETAGIQNRLGVLFFMLLYLSLMALSSLPIWRDEKLLFMRERASGVYG 950          
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Match: A0A7R9Y6A1_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y6A1_MICPS)

HSP 1 Score: 79.3 bits (194), Expect = 6.250e-15
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   49 PTQLSALLRRSALNVTRDPYLACLHIVLTLCVGLVVGSLFKDLKRLNGSTAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMALFLHERASGAYG 333
            P Q+ ALLRR   NV R P+L  LH V T    L +G +F    +    T G+Q+R+G +F +LLYL+L+ L+SL  WR+   LFL ER++GAYG
Sbjct:  323 PRQVRALLRRMVRNVRRHPFLILLHFVATGVASLGLGGVFFAAGK---DTGGIQNRMGCLFFILLYLALMSLSSLPVWREDRLLFLRERSNGAYG 414          
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Match: A0A250XNY5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XNY5_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 8.960e-15
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   37 SPPMPTQLSALLRRSALNVTRDPYLACLHIVLTLCVGLVVGSLFKDLKRLNGSTAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMALFLHERASGAY 330
            SPP   QLSAL  R   N TR P L  L+   TL + +V+  +F +      +T G+Q+RLGV+F LLLYLSL+ L+SL  WR +  LFL ERA+G Y
Sbjct:  897 SPPWKDQLSALSARLLRNTTRHPLLIALNFTSTLVLAVVLAVVFYNAGT---NTGGIQNRLGVLFFLLLYLSLMALSSLPIWRDERLLFLRERAAGLY 991          
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Match: A0A2K3CSF0_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3CSF0_CHLRE)

HSP 1 Score: 78.2 bits (191), Expect = 1.670e-14
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   37 SPPMPTQLSALLRRSALNVTRDPYLACLHIVLTLCVGLVVGSLFKDLKRLNGS-TAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMALFLHERASGAYG 333
            SPP   QL AL  R   N  R P+   L+   TL V + +G +F++    +G+ T+G+Q+RLGV+F +LLYLSL+ L+SL  WR +  LF+ ERASG YG
Sbjct:  640 SPPYLLQLRALSVRLLRNTYRHPFSVALNFAATLAVAVCLGLIFRN----SGTETSGIQNRLGVLFFMLLYLSLMSLSSLPIWRDEKLLFMRERASGVYG 735          
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Match: A0A7S0S945_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S945_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 2.260e-14
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   55 QLSALLRRSALNVTRDPYLACLHIVLTLCVGLVVGSLFKDLKRLNGSTAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMALFLHERASGAYG 333
            Q+  L +R A  V R P+L  LH V T    L +G++F    R    T G+Q+R+G +F +LLYL+L+ L+SL  WR+   LFL ERASGAYG
Sbjct:   21 QVRTLWQRMARTVRRHPFLITLHFVATGFAALSIGAIFFQAGR---DTGGIQNRMGCLFFMLLYLTLMSLSSLPVWREDRLLFLRERASGAYG 110          
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Match: A0A7S2WSI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSI0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.200e-14
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   52 TQLSALLRRSALNVTRDPYLACLHIVLTLCVGLVVGSLFKDLKRLNGSTAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMALFLHERASGAYGAA 339
            TQ   L +R    + R+ +   L+ ++ +    V+GS+FKD+ R +  TAG+QDR G++F L+LYLSLL L+SL  WR + ALF+ ER SG Y  A
Sbjct: 1217 TQFFVLSQRCMRGLLRNWFQLILNGLMAVVTAAVLGSVFKDVYRKDDETAGIQDRFGIMFFLVLYLSLLSLSSLPIWRDEQALFVVERGSGIYSTA 1312          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig975.28543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKD9_9PHAE2.720e-4280.58ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5L0D0_9PHAE3.130e-3365.38ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LNV5_ECTSI1.380e-3265.71ATP-binding cassette superfamily n=1 Tax=Ectocarpu... [more]
C1MIB0_MICPC1.020e-1548.42ATP-binding cassette superfamily n=3 Tax=Micromona... [more]
A0A835W233_9CHLO1.900e-1548.00Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A7R9Y6A1_MICPS6.250e-1546.32Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
A0A250XNY5_9CHLO8.960e-1547.96Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A2K3CSF0_CHLRE1.670e-1446.00Uncharacterized protein n=2 Tax=Chlamydomonas TaxI... [more]
A0A7S0S945_9CHLO2.260e-1446.24Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7S2WSI0_9STRA4.200e-1443.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig975contigD-dudresnayi_contig975:29681..30924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.5e-37
Seed eggNOG ortholog2880.D8LNU0
KEGG koko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Hectar predicted targeting categorysignal anchor
Exons2
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930930.5661564-CDS-D-dudresnayi_contig975:29682..298111622930930.5661564-CDS-D-dudresnayi_contig975:29682..29811Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig975 29683..29811 -
1690557969.6285276-CDS-D-dudresnayi_contig975:29682..298111690557969.6285276-CDS-D-dudresnayi_contig975:29682..29811Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig975 29683..29811 -
1622930930.584073-CDS-D-dudresnayi_contig975:30714..309241622930930.584073-CDS-D-dudresnayi_contig975:30714..30924Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig975 30715..30924 -
1690557969.6386142-CDS-D-dudresnayi_contig975:30714..309241690557969.6386142-CDS-D-dudresnayi_contig975:30714..30924Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig975 30715..30924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig975.28543.1prot_D-dudresnayi_contig975.28543.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig975 29683..30924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig975.28543.1

>prot_D-dudresnayi_contig975.28543.1 ID=prot_D-dudresnayi_contig975.28543.1|Name=mRNA_D-dudresnayi_contig975.28543.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=113bp
PLDADAKALVRTSPPMPTQLSALLRRSALNVTRDPYLACLHIVLTLCVGL
VVGSLFKDLKRLNGSTAGVQDRLGVVFLLLLYLSLLCLTSLAAWRKQMAL
FLHERASGAYGAA
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mRNA from alignment at D-dudresnayi_contig975:29681..30924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig975.28543.1 ID=mRNA_D-dudresnayi_contig975.28543.1|Name=mRNA_D-dudresnayi_contig975.28543.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1244bp|location=Sequence derived from alignment at D-dudresnayi_contig975:29681..30924- (Desmarestia dudresnayi DdudBR16 monoicous)
CCCCTGGACGCGGACGCAAAGGCTTTGGTGAGGACGTCGCCGCCCATGCC CACACAGCTGAGCGCACTCTTGCGCCGATCTGCTCTCAACGTGACCCGCG ATCCGTACCTGGCATGTCTGCACATCGTTCTGACCTTGTGCGTTGGCCTC GTGGTCGGGTCGCTGTTTAAAGACCTCAAACGTTTGAACGGGAGCACCGC TGGAGTGCAGGTGAGGGGCGTTTTTGACATGAGTAGATTGGCGCGATGGA GCGGGGGGGGTGGGGTGCAGCGTAGTGGTTTTTGGTTTTTGGTTTTTGAC CGTCCTCTGGAGGGGAGCAAAGGGGGGGGGGGGGGGGGTACTCGTTTGGT GCTTGCATTAGTCATTTGACCATTGACCGCGCATCCCTTTCGAGGCGGAA CACCGTTCTTACTCCTAATAGAGACACCTCCAACATTGGGGTGCTCTTTG CGTTTTTGCCATATCTTGCATGGAGGACGAGGGGGGGGGTGGGCAAGGCG CAAGAAGAATGTTCTCGTATTCGGTGCCTGCCCGCCGCCTCTTTCGCAGG GATACTCCCGGGATACATGTCCCCGCGTTCCCTCCTCCTCTTCTAGCTTT CCTTCCAGCGTACATAATCCTGAAGGCGTTGATTGTTTCTGCAAGTAGAT AACATTTTGTTTCGTTGATTCGTGTGATATTATATTAATAGTAGCTTTCT TTTGGGGTAGATAGTATTTTTTCTGTTTTTTTTGTCATTATTAATAGTTC TCCTTGTGTTTGTTGCGTTTCTGCTTTTTCTTGTTTGATTTTTCTCGTGT TAATTGTAATTATTTTTCTTTTTTGTTCCGTTTGCGATTTGGTGTTATGA TGTAGGTTGTGACCACGGGATTTGGTACCTCTCTAGGATGGAAGAATCAG TACAGACTCTGAGTACGTTACTACTGCTGGATGTCGTAGGGTAGGAAGGA CAATTTTTATTGTGAAGACGACAACAGCAACAACAACAACAACAACAAGT GCTTGTAGTAGTTTTCTAGGAAAGATGATGATCCACCCCTTACAGTTGTT TTTATTAGGAAATATGATGATCCACCGCGTCGCCCCGCCCCCCCGTCGCC CTTGCTCCCGCAGGATCGACTGGGCGTGGTATTCCTCCTCCTACTCTACC TGTCCCTCCTGTGCCTCACCTCCCTCGCGGCGTGGCGCAAACAGATGGCC CTCTTCCTGCACGAGCGAGCCTCGGGCGCATACGGCGCCGCCGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig975:29681..30924-

>mRNA_D-dudresnayi_contig975.28543.1 ID=mRNA_D-dudresnayi_contig975.28543.1|Name=mRNA_D-dudresnayi_contig975.28543.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at D-dudresnayi_contig975:29681..30924- (Desmarestia dudresnayi DdudBR16 monoicous)
CCCCTGGACGCGGACGCAAAGGCTTTGGTGAGGACGTCGCCGCCCATGCC
CACACAGCTGAGCGCACTCTTGCGCCGATCTGCTCTCAACGTGACCCGCG
ATCCGTACCTGGCATGTCTGCACATCGTTCTGACCTTGTGCGTTGGCCTC
GTGGTCGGGTCGCTGTTTAAAGACCTCAAACGTTTGAACGGGAGCACCGC
TGGAGTGCAGCCCCTGGACGCGGACGCAAAGGCTTTGGTGAGGACGTCGC
CGCCCATGCCCACACAGCTGAGCGCACTCTTGCGCCGATCTGCTCTCAAC
GTGACCCGCGATCCGTACCTGGCATGTCTGCACATCGTTCTGACCTTGTG
CGTTGGCCTCGTGGTCGGGTCGCTGTTTAAAGACCTCAAACGTTTGAACG
GGAGCACCGCTGGAGTGCAGGATCGACTGGGCGTGGTATTCCTCCTCCTA
CTCTACCTGTCCCTCCTGTGCCTCACCTCCCTCGCGGCGTGGCGCAAACA
GATGGCCCTCTTCCTGCACGAGCGAGCCTCGGGCGCATACGGCGCCGCCG
ATCGACTGGGCGTGGTATTCCTCCTCCTACTCTACCTGTCCCTCCTGTGC
CTCACCTCCCTCGCGGCGTGGCGCAAACAGATGGCCCTCTTCCTGCACGA
GCGAGCCTCGGGCGCATACGGCGCCGCC
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