mRNA_D-dudresnayi_contig10542.594.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10542.594.1
Unique NamemRNA_D-dudresnayi_contig10542.594.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10542.594.1 vs. uniprot
Match: A0A6H5JG03_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG03_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 5.590e-77
Identity = 131/166 (78.92%), Postives = 148/166 (89.16%), Query Frame = 1 
Query:   25 SEVKRQERNAREQRRSLMTSQQIDRLRQLLLESGIHAKPNKCSVLSEVAEYITQLETRLEELEAERETWIAETADIPEVARRDPNGGAIDCKQVFAHASVALAMATVEGRLMESNLQFEALSGYSKEELKQLTLLSLTAPSDLQDTFGRLSAMLTDGTGKAPKHVL 522
            SE+KRQERNAREQRRSLMTS+QID+LR+LL E GI  K NK SVLSEVA Y  QL+ ++E+LE ER  W+AET+D+PEV R+DPNGG IDCKQVFAHASVALAMATVEGRL+ESNLQFEALSG+  EELKQLTLLSLTAPS+LQ+TF RLSAMLTDGTGKAP+HVL
Sbjct:  195 SELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQRLSAMLTDGTGKAPEHVL 360
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BLAST of mRNA_D-dudresnayi_contig10542.594.1 vs. uniprot
Match: D7G8G2_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G2_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 3.400e-67
Identity = 114/147 (77.55%), Postives = 130/147 (88.44%), Query Frame = 1 
Query:   25 SEVKRQERNAREQRRSLMTSQQIDRLRQLLLESGIHAKPNKCSVLSEVAEYITQLETRLEELEAERETWIAETADIPEVARRDPNGGAIDCKQVFAHASVALAMATVEGRLMESNLQFEALSGYSKEELKQLTLLSLTAPSDLQDTF 465
            SE+KRQERNAREQRRSLMTS+QID+LR+LL E GI  K NK SVLSEVA Y  QL+ ++E+LE ER  W+AET+D+PEV R+DPNGG IDCKQVFAHASVALAMATVEGRL+ESNLQFEALSG+  EELKQLTLLSLTAPS+LQ+TF
Sbjct:  200 SELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETF 346
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BLAST of mRNA_D-dudresnayi_contig10542.594.1 vs. uniprot
Match: A0A7S1BWH9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BWH9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.090e-19
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = 1 
Query:   28 EVKRQERNAREQRRSLMTSQQIDRLRQLLLESGIHAKPNKCSVLSEVAEYITQLETRLEELEAERETWI---------AETADIPEVARRDPNGGAIDCKQVFAHA----------SVALAMATVEGRLMESNLQFEALSGYSKEELKQLTLLSLTAPSDLQDTFGRLSAMLTD 492
            E +R +RN REQ+RS   SQQI  L+ +L  S I  KPNK S+L   A YI QL++R   L++E +  +           T   P+   +  N  +ID   VF             S A+A+A+++GR ++ N+QFE +SGY+KEEL + TL +     D+++ F  +  ML +
Sbjct:  119 EKRRYDRNLREQQRSYKISQQIKELKTVLSNSNIPFKPNKFSILLSTAVYIKQLQSRAMLLDSEHQKLLNSIGQASEMVTTGQSPDDLAQASNTNSIDADLVFVQGLQYSNIFYQCSAAIAVASLDGRFLDCNIQFEKVSGYTKEELTRETLFNFLTNDDMEEVFKVMGQMLKE 292
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BLAST of mRNA_D-dudresnayi_contig10542.594.1 vs. uniprot
Match: W7TXM2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXM2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.810e-5
Identity = 26/81 (32.10%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:  274 PNGGAIDCKQVFAHASVALAMATVEGRLMESNLQFEALSGYSKEELKQLTLLSLTAPSDLQDTFGRLSAMLTDGTGKAPKH 516
            PN  + D   +F +AS+A+A+A+++G+ ++ N  F  +SGYS  E+ Q ++  LT   D Q+  G +  M+ +   ++ KH
Sbjct:  298 PNKKSADYALMFQNASIAMAVASLDGKFVDCNSAFSIISGYSNGEVLQRSVFDLTPAEDCQELMGIVGKMM-ESPAESAKH 377
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10542.594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JG03_9PHAE5.590e-7778.92BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G8G2_ECTSI3.400e-6777.55BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S1BWH9_9STRA7.090e-1935.06Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
W7TXM2_9STRA4.810e-532.10Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10542contigD-dudresnayi_contig10542:3054..6977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue4.6e-14
Seed eggNOG ortholog35128.Thaps20899
EggNOG free text desc.helix loop helix domain
EggNOG OGs2C415@1,2T5J0@2759,2XF85@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size524
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10542.594.1prot_D-dudresnayi_contig10542.594.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10542 3056..6977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.500627-CDS-D-dudresnayi_contig10542:3055..31101622927557.500627-CDS-D-dudresnayi_contig10542:3055..3110Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10542 3056..3110 -
1690556806.3260355-CDS-D-dudresnayi_contig10542:3055..31101690556806.3260355-CDS-D-dudresnayi_contig10542:3055..3110Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10542 3056..3110 -
1622927557.515908-CDS-D-dudresnayi_contig10542:4043..42071622927557.515908-CDS-D-dudresnayi_contig10542:4043..4207Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10542 4044..4207 -
1690556806.3392363-CDS-D-dudresnayi_contig10542:4043..42071690556806.3392363-CDS-D-dudresnayi_contig10542:4043..4207Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10542 4044..4207 -
1622927557.5331416-CDS-D-dudresnayi_contig10542:4777..48531622927557.5331416-CDS-D-dudresnayi_contig10542:4777..4853Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10542 4778..4853 -
1690556806.3466494-CDS-D-dudresnayi_contig10542:4777..48531690556806.3466494-CDS-D-dudresnayi_contig10542:4777..4853Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10542 4778..4853 -
1622927557.5511842-CDS-D-dudresnayi_contig10542:5575..57341622927557.5511842-CDS-D-dudresnayi_contig10542:5575..5734Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10542 5576..5734 -
1690556806.3538532-CDS-D-dudresnayi_contig10542:5575..57341690556806.3538532-CDS-D-dudresnayi_contig10542:5575..5734Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10542 5576..5734 -
1622927557.5711746-CDS-D-dudresnayi_contig10542:6909..69771622927557.5711746-CDS-D-dudresnayi_contig10542:6909..6977Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10542 6910..6977 -
1690556806.3611183-CDS-D-dudresnayi_contig10542:6909..69771690556806.3611183-CDS-D-dudresnayi_contig10542:6909..6977Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10542 6910..6977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10542.594.1

>prot_D-dudresnayi_contig10542.594.1 ID=prot_D-dudresnayi_contig10542.594.1|Name=mRNA_D-dudresnayi_contig10542.594.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=174bp
RTSVLLDASEVKRQERNAREQRRSLMTSQQIDRLRQLLLESGIHAKPNKC
SVLSEVAEYITQLETRLEELEAERETWIAETADIPEVARRDPNGGAIDCK
QVFAHASVALAMATVEGRLMESNLQFEALSGYSKEELKQLTLLSLTAPSD
LQDTFGRLSAMLTDGTGKAPKHVL
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mRNA from alignment at D-dudresnayi_contig10542:3054..6977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10542.594.1 ID=mRNA_D-dudresnayi_contig10542.594.1|Name=mRNA_D-dudresnayi_contig10542.594.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=3924bp|location=Sequence derived from alignment at D-dudresnayi_contig10542:3054..6977- (Desmarestia dudresnayi DdudBR16 monoicous)
CGGACATCGGTGTTGTTGGACGCGTCGGAGGTTAAGCGGCAGGAGAGGAA
CGCCCGTGAGCAACGGCGGTAAGTGCTTGAGTGTTGCCGTCGTTGCTGGA
GATGAGTTTGTTGGACTTCTGCGCGCGCTGCAGAAACCTTTAGGACGGGG
GAACGTGCGGCGGGTATCGGGTGCGAGCTGTGCACGCGTGTGTATTATGT
TGGTTCAGCTGCTTGTTTTGTTTATCTTCACGCTGGAAATTAACATTGAT
ATCATCATGTGGCTCACATGTCGCGCCCTGTAAACCGCAGCGCAGAGTAG
TGCAAACCAGTACGCGCGAGCGCGAGTCAAGTACACGGCATTTCTTGTCG
CGCTTGCCGGCATGTGTGTACTGCCCCTCCCAAAAAAAACAAACACTCGT
ACTAGAAGGAGGCCTGGGGGTGAGAGAGTGCAGTGCGCACTCATATGTGG
CGTGCCCTAGGTAGGAAACGGTTGACTTTGCTCCTTCCCGCGGGCGAGGT
ACATTGTTCCCACAGTAGGAGGAGGAGGATGAAAGGGGGGAGGAGAATGG
GCGATTGCCGATGAGGAATCGCTCTGTCTTTTCTGCCAACGGTGACTCAA
TACTCGCTTTCCGATCCTTATTGGCCACCGCCCGCGCCCGATCAGGCCCC
GTCACCTTTTTTTCTCCCGCTTATATCGCTACTACATTGGTGTCGCCATT
TCATAAGTCCAAAACCTTTGTATCGCATACTTGAGTTTTTCCCGGTTAGC
CTGGGAAAAATCCTCTCTCTTTCTCTCTCTATTCCCTTTTACACAATTGG
GATTCTTTTTCTTTGCGAATTCAATAATCCCACGCCGTTTCCAAACTCGC
GCCCCTAAAACGCCTCCTTGTGATCTTGTTGTATGATATGTTCTTGATTC
GTCGCCCGCGGTTGCGTGTCTTATGTATGATAAGTCAGCATCCCCTACCC
TTCAACCCGACCGCTGACGAGATAGGAAACATAGGGAAGGAAGGGTGTAC
TTGTATTTGCTGTCTTGCCTCGAGTTTTATTGGACGGCCTCCACTATCGT
CGTCTTGCTTGCTCTCGGTGTTGACGACACCGCACCGACTGCCATTTATA
ACCCTGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCGTTCGTTTTTTTTTTTATGATTTTGTTTTTCATGTGATG
TGTGCGTGCTTGTCTGGCGCCGCCCTGTGGCGGCGTCTCGCAGATCGTTG
ATGACATCTCAGCAGATCGACAGGCTTCGTCAGCTGTTGCTAGAGAGCGG
CATTCACGCAAAACCCAACAAGTGCAGCGTCTTGTCCGAGGTGGCGGAGT
ACATAACACAGCTCGAAACACGCCTAGAGGAGTTAGAAGCGGAGCGTGAA
ACGTGAGTACGTTATTTTTTGTTCATAGCGGAGGGGAGGGTGCATGTACG
AGGCGGGGGCGTTTGCTTGCTAGCTCACTACTCCTGGTGTAATTGTGTCG
ATTTCCGTGGCGTGTATCCATCGTCACCAATCGTTCTAGAGGTCAATTAC
GCCGAACATGGCTCCCCGTGGTCGAGGTGGTGAATTTCAAATCTAGTAAG
GTCGAGGTCGCGAGTGCGAGCCCCCCCCCGAAGGATGTTTTTTTCTTGTA
CAAATCGACTGCAGAAAACGCCTAGCGTGTGTATGCACAATTCGACGCGA
GTCGACGAGGGAAGAACGTGCTGCAATATTCTCGCTATAAAAACGTAGGC
ACGTACCATAGTGGAGGGGGGGGAGGAATGCCTGCTATATGACCCCGGAT
CTGAGTTACCAATAGAGAGGAAGCTGGAGAAAGAAGGGCGTAGATAACAA
ATGGGACGGGAAAACCCCCCCGAAAAGGCCCAACACCGTACAACCGCCAA
CACGCTGTACATCCTGAATGTCGCTGCCTGAGTATGGTAGAAGGCAGGCA
TTAATTGGTCAGCCCCGCTGATTTTTTTGGGCCTTACGTACGCCGATAAG
GCGATAAAACATATGTCGTTCGCTGCTAGGTTTTACACAGCCTTTCTCTG
TGTACGTGAGAAATTTAGTGCGGTGCTTTTCTTGCTTCTCTTTTTTGTGT
CGTTTTGGACAAAACGTCGCGCAGATGGATTGCGGAAACGGCCGACATTC
CTGAGGTTGCCCGGCGGGATCCCAACGGCGGGGCGATCGACTGCAAGCAG
GTGCTGGCGTACTCATTTGTTGCTTGCCTTAGAAATTTGACCATTGACCA
CGCATCCCTTTCGAGACGGAGCACCATTCCTACTCCTAATAGAGACACCT
CCAATATTTGGGCGCTCTTTACGTTTTTTCCACATCTTACATAAAATTTT
TTTGCTTATTTTACCCCCTGCATGTGTTGCCTTTTGTGGCCACCATCTAT
CTCTCAGGATCGGGGGGAGGGGGGTACCTCAACGCCATATGCTTGGTCTT
CATTGTGGCGCGCTTGAAAAATTAAAAAATATGTTTGCATCATCGATGGT
GTTTGCCGAAGTGTTGAGCAATGATGTTGGCGGAGCTGTGCCGTTGTGTT
TGCTCTTTATTTTTGAGGTTCGACGGGTATACCCACGAGTGCGTTAGCGT
TTAGCATGTCTCGCGCCTGGGGTGCGCTGCGGTGATTTCGTGTGTTTGTG
TTCACACTACTACTTAGAAGCATTTTAATCTGCAGCACTCTGGAGATAGA
TCTCTAAGTATACTTGCCGCGGTTGCGGTGCTGTTCTGTGCTGTGCTGCG
TTTTTTTGTGATACGTAAAGGTGTTCGCGCATGCCAGCGTGGCGTTGGCG
ATGGCTACCGTGGAAGGTCGACTGATGGAGAGCAACCTGCAGTTCGAGGC
ACTCAGCGGATACAGCAAGGAAGAGCTGAAGCAGCTCACGCTGCTCAGCC
TCACCGCGCCTTCTGACCTGCAAGATACGTTCGGGTGAGAGTCTCATGGT
GCTGCACTACCGTTGTTGTAACGGGCCGCCACATACCGTCAGTCGTTTCT
TGGGTGCGGCTCTTGTTTTGGTGTGGTGACGCTTCCTGCTGTGTAGATAG
AGGGAGTATCAGTCGTGTGGTGGCTGCAACCGCATCATCTCTCTTGCGTA
AGAAGCTTGGCGCTGTAGAGAGCATGGCATGGACACACACCCGAGTGCCT
GCGTATTTTTGGTCTTGGTTGTCGGCTTGTTCTACTTGCTGGTCGATGGG
TTGGTGCTGGCACCCATTATCTGTTGTTGTGTTCGTCGTGGTCTCAGGGG
GGGGGTCCAAGACTGCTACGAAAAACGCTGAAGAGTTCCGATATGCCCAA
GCACTTTGAGTATTTGTTGGTGCTGGTAAATCTTTATCGTGCCCAATTTG
CTACTACTGCTGTTGCGTGTGTACAAGGAGACACCAGTTCTCCATGACCC
ACATTGAGGCGTTTCGTCACGTGTTCCTGTGCACTACTATTATGACGCTT
GCGGCACACTACACTATGGTACAACTTTGCCCGAGCATGAGGGGACATTT
GATAAGGCTCCAGCATCTTCAAAAACAGGTTCCTCACTTTTCTGGCACCA
AGCATTTGTGGAGGCTAAAAATCGCCTTCATCGTAGAGCTATCGCACAAA
TGCGGTATACTTCGAAGTATACGTGGTGTGTTCGTTTGACGCTTGGCGTT
GCTTTGGAAGACATGTAACTACAAGTACTCTGCACGGTCCCGTAGTGATC
GAAATATCGCAGGCTCACCGCGACGCGCGGCAACACGCCGTCGATGGGGT
AGTGCCCTGCCCCTGTTCCGTTGACCCTGCTGGCATACTGGCAGCCCGTC
TCGCTGCGTGCGGGTGGTTTGTTTGCATAACCCGCGCTCGCCGCCCACTG
CCCAACTCACGTCGCAGGCGCCTGTCGGCCATGCTCACGGATGGCACGGG
CAAGGCTCCGAAGCACGTCTTGGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10542:3054..6977-

>mRNA_D-dudresnayi_contig10542.594.1 ID=mRNA_D-dudresnayi_contig10542.594.1|Name=mRNA_D-dudresnayi_contig10542.594.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at D-dudresnayi_contig10542:3054..6977- (Desmarestia dudresnayi DdudBR16 monoicous)
CGGACATCGGTGTTGTTGGACGCGTCGGAGGTTAAGCGGCAGGAGAGGAA
CGCCCGTGAGCAACGGCGCGGACATCGGTGTTGTTGGACGCGTCGGAGGT
TAAGCGGCAGGAGAGGAACGCCCGTGAGCAACGGCGATCGTTGATGACAT
CTCAGCAGATCGACAGGCTTCGTCAGCTGTTGCTAGAGAGCGGCATTCAC
GCAAAACCCAACAAGTGCAGCGTCTTGTCCGAGGTGGCGGAGTACATAAC
ACAGCTCGAAACACGCCTAGAGGAGTTAGAAGCGGAGCGTGAAACATCGT
TGATGACATCTCAGCAGATCGACAGGCTTCGTCAGCTGTTGCTAGAGAGC
GGCATTCACGCAAAACCCAACAAGTGCAGCGTCTTGTCCGAGGTGGCGGA
GTACATAACACAGCTCGAAACACGCCTAGAGGAGTTAGAAGCGGAGCGTG
AAACATGGATTGCGGAAACGGCCGACATTCCTGAGGTTGCCCGGCGGGAT
CCCAACGGCGGGGCGATCGACTGCAAGCAGATGGATTGCGGAAACGGCCG
ACATTCCTGAGGTTGCCCGGCGGGATCCCAACGGCGGGGCGATCGACTGC
AAGCAGGTGTTCGCGCATGCCAGCGTGGCGTTGGCGATGGCTACCGTGGA
AGGTCGACTGATGGAGAGCAACCTGCAGTTCGAGGCACTCAGCGGATACA
GCAAGGAAGAGCTGAAGCAGCTCACGCTGCTCAGCCTCACCGCGCCTTCT
GACCTGCAAGATACGTTCGGGTGTTCGCGCATGCCAGCGTGGCGTTGGCG
ATGGCTACCGTGGAAGGTCGACTGATGGAGAGCAACCTGCAGTTCGAGGC
ACTCAGCGGATACAGCAAGGAAGAGCTGAAGCAGCTCACGCTGCTCAGCC
TCACCGCGCCTTCTGACCTGCAAGATACGTTCGGGCGCCTGTCGGCCATG
CTCACGGATGGCACGGGCAAGGCTCCGAAGCACGTCTTGGCGCCTGTCGG
CCATGCTCACGGATGGCACGGGCAAGGCTCCGAAGCACGTCTTG
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