mRNA_D-dudresnayi_contig10528.578.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10528.578.1
Unique NamemRNA_D-dudresnayi_contig10528.578.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Match: A0A7J7QR03_9CHLO (Flagellar WD repeat-containing protein Pf20 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QR03_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 4.650e-14
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    4 TFTDHTQAVWGSEFHPGGDFVASCSMDHTVRIWDLIAGKCKQTLRG 141
            T +DH QAVW  ++H  GD++ASCS+DH+VR+WDL +GKC+Q LRG
Sbjct:  421 TLSDHKQAVWSVKYHDQGDWLASCSLDHSVRLWDLSSGKCRQVLRG 466          
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Match: K9SIB4_9CYAN ((Myosin heavy-chain) kinase n=1 Tax=Pseudanabaena sp. PCC 7367 TaxID=82654 RepID=K9SIB4_9CYAN)

HSP 1 Score: 53.1 bits (126), Expect = 7.280e-7
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 1
Query:    7 FTDHTQAVWGSEFHPGGDFVASCSMDHTVRIWDLIAGKCKQTLR 138
            F  H + +   E  P G+ + SC  DHT+RIWDL+AG+C Q LR
Sbjct:  139 FNGHNRPISDLEITPDGNQLISCGEDHTIRIWDLVAGRCHQILR 182          
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Match: A0A139WWZ1_9CYAN (Ricin B-type lectin domain-containing protein n=1 Tax=Scytonema hofmannii PCC 7110 TaxID=128403 RepID=A0A139WWZ1_9CYAN)

HSP 1 Score: 52.8 bits (125), Expect = 8.020e-7
Identity = 20/40 (50.00%), Postives = 25/40 (62.50%), Query Frame = 1
Query:   16 HTQAVWGSEFHPGGDFVASCSMDHTVRIWDLIAGKCKQTL 135
            HT +VW   F P G  +ASCS+D T+RIWD+  G C   L
Sbjct:    8 HTDSVWSVAFSPNGQLLASCSLDRTIRIWDVSNGNCLHIL 47          
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Match: A0A2W4WEI6_9CYAN (NB-ARC domain-containing protein n=2 Tax=Pseudanabaena TaxID=1152 RepID=A0A2W4WEI6_9CYAN)

HSP 1 Score: 52.4 bits (124), Expect = 1.370e-6
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1
Query:   16 HTQAVWGSEFHPGGDFVASCSMDHTVRIWDLIAGKCKQTLRG 141
            HT  V    F P G F+AS S D TVR+WD++ GKC QTLRG
Sbjct:  948 HTAWVRMVSFSPDGHFLASGSEDQTVRLWDVLTGKCLQTLRG 989          
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Match: A0A1I8JNG7_9PLAT (WD_REPEATS_REGION domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8JNG7_9PLAT)

HSP 1 Score: 51.2 bits (121), Expect = 3.500e-6
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   25 AVWGSEFHPGGDFVASCSMDHTVRIWDLIAGKCKQTLRG 141
            AVW  ++H  G+F+AS SMD+TVR++DL + +C+Q LRG
Sbjct:  365 AVWSLQYHWTGNFIASASMDNTVRLFDLGSVRCRQILRG 403          
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Match: A0A355CFX2_9CYAN (CHAT domain-containing protein n=2 Tax=unclassified Microcoleaceae TaxID=2053578 RepID=A0A355CFX2_9CYAN)

HSP 1 Score: 50.1 bits (118), Expect = 8.950e-6
Identity = 18/45 (40.00%), Postives = 27/45 (60.00%), Query Frame = 1
Query:    1 HTFTDHTQAVWGSEFHPGGDFVASCSMDHTVRIWDLIAGKCKQTL 135
            HT TDH+  +     HP G   ASCS+D T+++W+L  G+  + L
Sbjct:  389 HTLTDHSDIIKSVAIHPDGQIFASCSLDQTIKVWNLTTGELLENL 433          
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Match: UPI001BAEFCD3 (NB-ARC domain-containing protein n=2 Tax=Acaryochloris TaxID=155977 RepID=UPI001BAEFCD3)

HSP 1 Score: 49.3 bits (116), Expect = 1.680e-5
Identity = 22/49 (44.90%), Postives = 30/49 (61.22%), Query Frame = 1
Query:    1 HTFT--DHTQAVWGSEFHPGGDFVASCSMDHTVRIWDLIAGKCKQTLRG 141
            H FT   H   +W   F   G  +AS S+DHT+++W+L +G C QTLRG
Sbjct:  607 HQFTLPGHKVLIWTIAFSDDGCLLASGSIDHTIKVWNLKSGSCVQTLRG 655          
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Match: A0A430Q5X4_SCHBO (Platelet-activating factor acetylhydrolase IB subunit alpha n=1 Tax=Schistosoma bovis TaxID=6184 RepID=A0A430Q5X4_SCHBO)

HSP 1 Score: 48.1 bits (113), Expect = 1.940e-5
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 1
Query:    4 TFTDHTQAVWGSEFHPGGDFVASCSMDHTVRIWDLIAGKCKQTLRG 141
            TF  HT+ +      P G+ +ASCS DHT+RIW + + +C+  LRG
Sbjct:   19 TFIGHTEWIRSVRPSPEGNLLASCSNDHTIRIWSVESRECQVVLRG 64          
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Match: UPI001C017AC0 (quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Suillus subaureus TaxID=48587 RepID=UPI001C017AC0)

HSP 1 Score: 48.9 bits (115), Expect = 2.270e-5
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 1
Query:    7 FTDHTQAVWGSEFHPGGDFVASCSMDHTVRIWDLIAGK 120
            F  HT  VWG    PGG  + +CSMDH++R+W+L +GK
Sbjct:    6 FEGHTGDVWGVIHLPGGQRIITCSMDHSMRVWNLKSGK 43          
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Match: B0C7R2_ACAM1 (WD-repeat protein n=2 Tax=Acaryochloris TaxID=155977 RepID=B0C7R2_ACAM1)

HSP 1 Score: 48.9 bits (115), Expect = 2.300e-5
Identity = 19/46 (41.30%), Postives = 29/46 (63.04%), Query Frame = 1
Query:    4 TFTDHTQAVWGSEFHPGGDFVASCSMDHTVRIWDLIAGKCKQTLRG 141
            T + H   +    F   G  +ASCS+DHT++IW++ +G C QTL+G
Sbjct:  611 TLSSHKVLILSITFSNDGCLIASCSVDHTIKIWNVKSGSCIQTLKG 656          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10528.578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A7J7QR03_9CHLO4.650e-1460.87Flagellar WD repeat-containing protein Pf20 n=1 Ta... [more]
K9SIB4_9CYAN7.280e-747.73(Myosin heavy-chain) kinase n=1 Tax=Pseudanabaena ... [more]
A0A139WWZ1_9CYAN8.020e-750.00Ricin B-type lectin domain-containing protein n=1 ... [more]
A0A2W4WEI6_9CYAN1.370e-657.14NB-ARC domain-containing protein n=2 Tax=Pseudanab... [more]
A0A1I8JNG7_9PLAT3.500e-653.85WD_REPEATS_REGION domain-containing protein n=1 Ta... [more]
A0A355CFX2_9CYAN8.950e-640.00CHAT domain-containing protein n=2 Tax=unclassifie... [more]
UPI001BAEFCD31.680e-544.90NB-ARC domain-containing protein n=2 Tax=Acaryochl... [more]
A0A430Q5X4_SCHBO1.940e-543.48Platelet-activating factor acetylhydrolase IB subu... [more]
UPI001C017AC02.270e-550.00quinon protein alcohol dehydrogenase-like superfam... [more]
B0C7R2_ACAM12.300e-541.30WD-repeat protein n=2 Tax=Acaryochloris TaxID=1559... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10528contigD-dudresnayi_contig10528:6..146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.9675436-CDS-D-dudresnayi_contig10528:5..1461622927555.9675436-CDS-D-dudresnayi_contig10528:5..146Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10528 6..146 +
1690556805.7623444-CDS-D-dudresnayi_contig10528:5..1461690556805.7623444-CDS-D-dudresnayi_contig10528:5..146Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10528 6..146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10528.578.1prot_D-dudresnayi_contig10528.578.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10528 6..146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10528.578.1

>prot_D-dudresnayi_contig10528.578.1 ID=prot_D-dudresnayi_contig10528.578.1|Name=mRNA_D-dudresnayi_contig10528.578.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=47bp
HTFTDHTQAVWGSEFHPGGDFVASCSMDHTVRIWDLIAGKCKQTLRG
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mRNA from alignment at D-dudresnayi_contig10528:6..146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10528.578.1 ID=mRNA_D-dudresnayi_contig10528.578.1|Name=mRNA_D-dudresnayi_contig10528.578.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at D-dudresnayi_contig10528:6..146+ (Desmarestia dudresnayi DdudBR16 monoicous)
CATACTTTTACTGATCACACTCAAGCAGTATGGGGAAGTGAGTTCCATCC AGGAGGAGACTTTGTTGCCTCCTGCTCTATGGATCATACAGTGCGTATCT GGGACTTAATCGCAGGAAAATGTAAGCAAACACTGCGTGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10528:6..146+

>mRNA_D-dudresnayi_contig10528.578.1 ID=mRNA_D-dudresnayi_contig10528.578.1|Name=mRNA_D-dudresnayi_contig10528.578.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at D-dudresnayi_contig10528:6..146+ (Desmarestia dudresnayi DdudBR16 monoicous)
CATACTTTTACTGATCACACTCAAGCAGTATGGGGAAGTGAGTTCCATCC
AGGAGGAGACTTTGTTGCCTCCTGCTCTATGGATCATACAGTGCGTATCT
GGGACTTAATCGCAGGAAAATGTAAGCAAACACTGCGTGGGCATACTTTT
ACTGATCACACTCAAGCAGTATGGGGAAGTGAGTTCCATCCAGGAGGAGA
CTTTGTTGCCTCCTGCTCTATGGATCATACAGTGCGTATCTGGGACTTAA
TCGCAGGAAAATGTAAGCAAACACTGCGTGGG
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