mRNA_D-dudresnayi_contig10518.565.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10518.565.1
Unique NamemRNA_D-dudresnayi_contig10518.565.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10518.565.1 vs. uniprot
Match: D7G7A4_ECTSI (Similar to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 9.800e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 LFGDRPADSGAGWEKILGKSYKLDQKKQQARLGRGKREKTQVRLYAADEAQPSPS 165
            LFG+RPADSGAGWE+IL KSYK  Q  Q ARLGRGKREKTQVR YAA+E +  P+
Sbjct: 1459 LFGERPADSGAGWEEILAKSYKEQQTSQAARLGRGKREKTQVRPYAAEEDEHDPT 1513
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BLAST of mRNA_D-dudresnayi_contig10518.565.1 vs. uniprot
Match: A0A6H5JZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.000e-13
Identity = 54/113 (47.79%), Postives = 61/113 (53.98%), Query Frame = 1 
Query:    1 LFGDRPADSGAGWEKILGKSYKLDQKKQQARLGRGKREKTQ----VRLYAADE-----AQPSPSADEDGSI-------------------------EFEPEQPDAEFEMPSSK 237
            LFG+RPADSGAGWE+IL KSYK  Q  Q ARLGRGKREKTQ    VR YAA+E     A        +GS+                         E+  EQPDAEFE P+SK
Sbjct: 1358 LFGERPADSGAGWEEILAKSYKEHQTSQAARLGRGKREKTQASRQVRPYAAEEDEHDAANHGGGGSSNGSLRHGEEGRXXXXXXXXXXXXXXXXXXEYGSEQPDAEFEPPTSK 1470
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10518.565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7A4_ECTSI9.800e-1572.73Similar to chromodomain helicase DNA binding prote... [more]
A0A6H5JZW8_9PHAE3.000e-1347.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10518contigD-dudresnayi_contig10518:6755..8223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D7G7A4
KEGG koko:K11643,ko:K14439
KEGG Pathwayko04550,ko05165,ko05203,map04550,map05165,map05203
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size322
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10518.565.1prot_D-dudresnayi_contig10518.565.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10518 6756..8223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.324473-CDS-D-dudresnayi_contig10518:6755..69531622927554.324473-CDS-D-dudresnayi_contig10518:6755..6953Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 6756..6953 -
1690556805.068115-CDS-D-dudresnayi_contig10518:6755..69531690556805.068115-CDS-D-dudresnayi_contig10518:6755..6953Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 6756..6953 -
1622927554.3442576-CDS-D-dudresnayi_contig10518:7687..77841622927554.3442576-CDS-D-dudresnayi_contig10518:7687..7784Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 7688..7784 -
1690556805.0806131-CDS-D-dudresnayi_contig10518:7687..77841690556805.0806131-CDS-D-dudresnayi_contig10518:7687..7784Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 7688..7784 -
1622927554.3586426-CDS-D-dudresnayi_contig10518:8197..82231622927554.3586426-CDS-D-dudresnayi_contig10518:8197..8223Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 8198..8223 -
1690556805.0892613-CDS-D-dudresnayi_contig10518:8197..82231690556805.0892613-CDS-D-dudresnayi_contig10518:8197..8223Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10518 8198..8223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10518.565.1

>prot_D-dudresnayi_contig10518.565.1 ID=prot_D-dudresnayi_contig10518.565.1|Name=mRNA_D-dudresnayi_contig10518.565.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=107bp
LFGDRPADSGAGWEKILGKSYKLDQKKQQARLGRGKREKTQVRLYAADEA
QPSPSADEDGSIEFEPEQPDAEFEMPSSKAPPKSGAAAGTSTDGASTPAE
GEGGVGG
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mRNA from alignment at D-dudresnayi_contig10518:6755..8223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10518.565.1 ID=mRNA_D-dudresnayi_contig10518.565.1|Name=mRNA_D-dudresnayi_contig10518.565.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1469bp|location=Sequence derived from alignment at D-dudresnayi_contig10518:6755..8223- (Desmarestia dudresnayi DdudBR16 monoicous)
CTCTTCGGCGACAGGCCTGCGGACAGGTGCGCGTTGTCGTGTTGTCAACC
ATTGTTGTTGTGGATAGCCGTTTTGTTGTGGTACTTGTAGTGCCGTTTCG
TGCTGTTTTTGACACGCGTTCACTCGCCCCTGTTGTTGTAGTATAATAGT
GTGGATTGTGTATTGGGTATCGTTGCTAGTAGTAGTGGTGGTGGTGTTCG
CATGCTTAAACTTTACGTCAGTGGTGGAGACTTCTTTGTGTGTGTATGTG
GTTTGTTTTTTGTTTGTTGCGTTGTTGTGTGTTTGTTTATTAATAAAGTG
TTTCGGCGTTCTCTTCGCTGTTTCCATTTTCCGTCGTCCCTCGGACTATG
GTTGGTCATCGTCCCTCCCCCTACTTTTTGTTTGTTCGCGGGTCGATCGA
TCGACTGCCTTGCTTTGCCGGTTTCTGACACGGTGTTAGCGGCGCGGGAT
GGGAAAAAATTCTGGGAAAGAGCTACAAGCTGGACCAGAAGAAACAGCAG
GCCAGACTGGGCAGGGGAAAGAGAGAGAAGACTCAGGTGAACAGAAGACT
CAGGTGGGGTGGGGTGGGGTGGGGTGGACCCGGGTTGGGTGGGGTGGGGT
GGGGCGGACCCGGGGGGCGGTTACCAATTGAGTCGTTCTACCGTAACGAA
TTCGTAGATATCGTAGCTGAGTTGGGCCGTGCTGCTCTGTCCCAAAAAAG
TAAATAATGATTTGCTGTCGTACGAAGTAGTAGTTTAATTTTTGCTTTTT
TTGAGACGAGGTAGACTTGGCGGGATACGACAGGGCAGGTTTTCATGTAA
ATAGTACGAGTACTATTTTTATGACAGGAATAGGCGCTACCAGCAAGCGC
CTTGTTTTTTAGGCTGCCCTACCCCCTTCCCCATCATGATTGACCCTTCT
CTCTGTAGCTCTATGTATTTATGTACAGTAGAGTGCATACTTTGTGTATA
CTTGGCACCGTGTGGCCAACGACAAAGGTTGACAAAAACAGCCACAATGG
TTGTCGAACACCAAAAATGATTGACAGTACCAAAAATGGTTGACAGTACC
AAAAGTGGTTGACAACAACAACAATAATGCTGGACAATAACAGCAACAAC
AACAACAAATAGTGCTTGACAATAATAAAAACAATGCTTCATAACCACGA
CAATGGTTTAACATTGCTTGACAAACGAAAAAAAAGCTTCACAAAAACCA
CCAAAAAGCAAAACCATGATTGAGACAACACGAAATAACAACTCTAACAA
TGGCATAACGACGGCGACAGGTCCGTCTCTACGCCGCGGACGAGGCCCAA
CCTTCTCCCTCCGCCGACGAGGACGGATCGATAGAGTTCGAGCCGGAGCA
GCCGGACGCCGAGTTCGAGATGCCTTCATCCAAGGCCCCGCCCAAGTCGG
GAGCAGCAGCTGGAACATCAACCGATGGCGCCAGCACGCCTGCTGAAGGA
GAGGGTGGTGTTGGTGGTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10518:6755..8223-

>mRNA_D-dudresnayi_contig10518.565.1 ID=mRNA_D-dudresnayi_contig10518.565.1|Name=mRNA_D-dudresnayi_contig10518.565.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at D-dudresnayi_contig10518:6755..8223- (Desmarestia dudresnayi DdudBR16 monoicous)
CTCTTCGGCGACAGGCCTGCGGACAGCTCTTCGGCGACAGGCCTGCGGAC
AGCGGCGCGGGATGGGAAAAAATTCTGGGAAAGAGCTACAAGCTGGACCA
GAAGAAACAGCAGGCCAGACTGGGCAGGGGAAAGAGAGAGAAGACTCAGC
GGCGCGGGATGGGAAAAAATTCTGGGAAAGAGCTACAAGCTGGACCAGAA
GAAACAGCAGGCCAGACTGGGCAGGGGAAAGAGAGAGAAGACTCAGGTCC
GTCTCTACGCCGCGGACGAGGCCCAACCTTCTCCCTCCGCCGACGAGGAC
GGATCGATAGAGTTCGAGCCGGAGCAGCCGGACGCCGAGTTCGAGATGCC
TTCATCCAAGGCCCCGCCCAAGTCGGGAGCAGCAGCTGGAACATCAACCG
ATGGCGCCAGCACGCCTGCTGAAGGAGAGGGTGGTGTTGGTGGTGTCCGT
CTCTACGCCGCGGACGAGGCCCAACCTTCTCCCTCCGCCGACGAGGACGG
ATCGATAGAGTTCGAGCCGGAGCAGCCGGACGCCGAGTTCGAGATGCCTT
CATCCAAGGCCCCGCCCAAGTCGGGAGCAGCAGCTGGAACATCAACCGAT
GGCGCCAGCACGCCTGCTGAAGGAGAGGGTGGTGTTGGTGGT
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