mRNA_D-dudresnayi_contig10425.461.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10425.461.1
Unique NamemRNA_D-dudresnayi_contig10425.461.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10425.461.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.350e-18
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 2 
Query:    2 VAPGARSTRAALAACWGAEDIETALEVYGVMCKAEIRPDNRSLLELVKLCKANDMPDTAARIMRERS 202
            VAPG RSTRAALAAC GA D++TAL+VY VM +  IRP++R+LL+LV LC+AN +   AARIMRERS
Sbjct: 1007 VAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCRANGLQSVAARIMRERS 1073
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BLAST of mRNA_D-dudresnayi_contig10425.461.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.060e-10
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 2 
Query:    2 VAPGARSTRAALAACWGAEDIETALEVYGVMCKAEIRPDNRSLLELVKLCKANDMPDTAARIMRERSNVTY 214
            +AP +R+    L AC    D+  AL VYGVM  A IRPDNRSLL LV+LC++  M D A  I+R+RS++ +
Sbjct:  788 LAPSSRTCSLVLGACRHQGDLTQALSVYGVMNTAGIRPDNRSLLSLVRLCESAGMADKARDIIRDRSSLEH 858
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10425.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSJ6_ECTSI4.350e-1867.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEM1_9STRA4.060e-1049.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10425contigD-dudresnayi_contig10425:4140..4960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size273
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10425.461.1prot_D-dudresnayi_contig10425.461.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10425 4173..4960 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.2703838-UTR-D-dudresnayi_contig10425:4139..41721622927542.2703838-UTR-D-dudresnayi_contig10425:4139..4172Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10425 4140..4172 -
1690556800.0809476-UTR-D-dudresnayi_contig10425:4139..41721690556800.0809476-UTR-D-dudresnayi_contig10425:4139..4172Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10425 4140..4172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927542.2875123-CDS-D-dudresnayi_contig10425:4172..43661622927542.2875123-CDS-D-dudresnayi_contig10425:4172..4366Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10425 4173..4366 -
1690556800.088896-CDS-D-dudresnayi_contig10425:4172..43661690556800.088896-CDS-D-dudresnayi_contig10425:4172..4366Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10425 4173..4366 -
1622927542.3078969-CDS-D-dudresnayi_contig10425:4881..49601622927542.3078969-CDS-D-dudresnayi_contig10425:4881..4960Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10425 4882..4960 -
1690556800.0968318-CDS-D-dudresnayi_contig10425:4881..49601690556800.0968318-CDS-D-dudresnayi_contig10425:4881..4960Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10425 4882..4960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10425.461.1

>prot_D-dudresnayi_contig10425.461.1 ID=prot_D-dudresnayi_contig10425.461.1|Name=mRNA_D-dudresnayi_contig10425.461.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=91bp
RSSWGEVDEGGAGRLLGSRRHRNRARGVRRDVQSGNTTRQSLAPGAGQAL
QSERHARYRCSYHARAQQCHLLRYMTRKHRYINYLWLGVI*
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mRNA from alignment at D-dudresnayi_contig10425:4140..4960-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10425.461.1 ID=mRNA_D-dudresnayi_contig10425.461.1|Name=mRNA_D-dudresnayi_contig10425.461.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=821bp|location=Sequence derived from alignment at D-dudresnayi_contig10425:4140..4960- (Desmarestia dudresnayi DdudBR16 monoicous)
CGTAGCTCCTGGGGCGAGGTCGACGAGGGCGGCGCTGGCCGCTTGCTGGG
GAGCAGAAGACATCGAAACCGCGCTCGAGGTGTGTACACGAATATAATTG
CGTGTATGTGTGTGTTTGCTGATCCTCGGTTGGTTGGATGTAAGAATGTA
AAACGTGAAGCTTAAGCTCAACTGCGCTTTCATGCAGCAAGCTGCCTACG
GGTATGTATCATGTGTGGTGTGGCGATTAGAAACCCTGGTTGTAGAACGC
ATGGAGTGTTGGATTGGCCATTTGTTTGTTTTTTAGGCCTGTTTCTGCAG
ACGTCCTTCCCATTCAGGGGCATCGCGCCATGAGTGGTACCGAAATGCGA
TGCGACGAGTACGTTTTTTATCGCTTCCGTTACCAAGTGCTTACTTTTGG
CAAAGTTCTCCAACAGTTTTCTGCTTTGTGAGTTTATTTTTTCGCCAATG
TTGTTAATAGACAATGTGGGCTCTGTTCGGCCATTGTAGGCCATACATAC
TTTTCGTGTGGATGACACGCTATTTATTATTGCTGTACTGTCGTGTGAGC
ACCACGCGGTATTTTTGCTGCCCACTATTCACGACTTTATCCAGGTGTAC
GGCGTGATGTGCAAAGCGGAAATACGACCAGACAATCGCTCGCTCCTGGA
GCTGGTCAAGCTCTGCAAAGCGAACGACATGCCCGATACCGCTGCTCGTA
TCATGCGAGAGCGCAGCAATGTCACCTATTGAGATATATGACACGCAAGC
ATCGCTATATTAATTATCTATGGCTGGGCGTCATTTAATATTGCGGAAGA
TTGTCGGAGCGGGGAGGGGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10425:4140..4960-

>mRNA_D-dudresnayi_contig10425.461.1 ID=mRNA_D-dudresnayi_contig10425.461.1|Name=mRNA_D-dudresnayi_contig10425.461.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at D-dudresnayi_contig10425:4140..4960- (Desmarestia dudresnayi DdudBR16 monoicous)
CGTAGCTCCTGGGGCGAGGTCGACGAGGGCGGCGCTGGCCGCTTGCTGGG
GAGCAGAAGACATCGAAACCGCGCTCGAGCGTAGCTCCTGGGGCGAGGTC
GACGAGGGCGGCGCTGGCCGCTTGCTGGGGAGCAGAAGACATCGAAACCG
CGCTCGAGGTGTACGGCGTGATGTGCAAAGCGGAAATACGACCAGACAAT
CGCTCGCTCCTGGAGCTGGTCAAGCTCTGCAAAGCGAACGACATGCCCGA
TACCGCTGCTCGTATCATGCGAGAGCGCAGCAATGTCACCTATTGAGATA
TATGACACGCAAGCATCGCTATATTAATTATCTATGGCTGGGCGTCATTT
AAGTGTACGGCGTGATGTGCAAAGCGGAAATACGACCAGACAATCGCTCG
CTCCTGGAGCTGGTCAAGCTCTGCAAAGCGAACGACATGCCCGATACCGC
TGCTCGTATCATGCGAGAGCGCAGCAATGTCACCTATTGAGATATATGAC
ACGCAAGCATCGCTATATTAATTATCTATGGCTGGGCGTCATTTAA
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