mRNA_D-dudresnayi_contig10421.456.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10421.456.1
Unique NamemRNA_D-dudresnayi_contig10421.456.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Match: A0A7S0XD73_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XD73_9STRA)

HSP 1 Score: 297 bits (761), Expect = 1.600e-97
Identity = 139/274 (50.73%), Postives = 211/274 (77.01%), Query Frame = 3
Query:   42 MAAKGLIFLEAKSSILYEQLHPRILSDKREPCEITFNDFDDVLFKIFCSQETPNIVQVHIAMKNVEELKKMGSDDLLNTLFPGMEIAPADGFNYALQFDCDNLPGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRKAEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPVSYSKEPPGELAGLPTSFSTDTAGYIAFALEERHVAGAAKEKAITLLTGFRNYLHYHIKCSKTYLHMRMRKRVAG 863
            MA KGL+FL++K++IL E L  R+L   R+ CE  F+DFDDV +++ C  +    ++V+I+M+ + EL+  G+D +++ LFPG+E+ P   +++A+QF+  ++  +  + L  +SEL+R++  GP++ AF+ALL+K S+++P  +I YR  E ++VCPA +K+VV+F VDF D+TD++LAR++LQEFVEAQR++RTAPPV++S+EPP ELA L  +++ D  G+++F LEERH+ G  K+ AITLLTGFR+YL+YHIKCSKTYLHMRMRK+VAG
Sbjct:    1 MATKGLVFLDSKNAILLETLQSRLLEGNRDECEFEFSDFDDVSYRVLCQGDN---IKVNISMRGLNELRSSGTDLVIDRLFPGLEVNPDPKYDFAIQFNISSI-SNPQKLLTDISELKRNLLSGPIEVAFDALLSKTSNHLPITIINYRPNETIFVCPAPAKIVVIFLVDFNDITDKSLARIFLQEFVEAQRSIRTAPPVNFSREPPLELANLRFTYNPDATGFLSFGLEERHITGDKKQTAITLLTGFRSYLYYHIKCSKTYLHMRMRKKVAG 270          
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Match: A0A812XCT5_SYMMI (Arp2/3 complex 34 kDa subunit n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XCT5_SYMMI)

HSP 1 Score: 241 bits (616), Expect = 1.530e-76
Identity = 117/204 (57.35%), Postives = 158/204 (77.45%), Query Frame = 3
Query:  252 MGSDDLLNTLFPGMEIAPADGFNYALQFDCDNLPGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRKAEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPVSYSKEPPGELAGLPTSFSTDTAGYIAFALEERHVAGAAKEKAITLLTGFRNYLHYHIKCSKTYLHMRMRKRVAG 863
            +GS +LL   FPGME  P  G++ A++FDCDNL  +  + L+ VS+++RH+ GGP+++AF  L A   S  P + I+YRK   +Y+CP+ SKVVV+F VDF D TD+A+ARV+L+EF EAQRTVRTAPPV++++EPP E+A +  +++T+ AG+++FA EERHV G     A+T+LTGFRNYLHYHIKCSKTYLHMRMRKRVAG
Sbjct:    1 LGSSELLERHFPGMETRPDAGYDVAVEFDCDNL-ANPEETLSEVSQIKRHVLGGPLNKAFTTL-ATHGSPAPAVAIKYRKNGMMYICPSDSKVVVIFLVDFLDPTDQAIARVFLKEFEEAQRTVRTAPPVAFTREPPREIATMVGTYNTEAAGFLSFAFEERHVVGTQLNTAVTMLTGFRNYLHYHIKCSKTYLHMRMRKRVAG 202          
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Match: A0A482RR48_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RR48_9ARCH)

HSP 1 Score: 224 bits (571), Expect = 9.470e-70
Identity = 110/174 (63.22%), Postives = 137/174 (78.74%), Query Frame = 3
Query:  342 DNLPGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRKAEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPVSYSKEPPGELAGLPTSFSTDTAGYIAFALEERHVAGAAKEKAITLLTGFRNYLHYHIKCSKTYLHMRMRKRVAG 863
            D LP  A QFLN+VSELRRH+  GP+D+AF ++LAK SSN+P   IEYR  E  ++ P   K++VVF VDF+DVTD+ALARV+LQEFVEAQR VR APPV+YS+E P  L+ +  +   + AG+I+FA+E+RHV GA KEK +TLLTGFR YLHYHIKCSKTYLHMRMR++VA 
Sbjct:   28 DALPAPAEQFLNTVSELRRHMMAGPLDKAFGSMLAKTSSNLPITTIEYRAMEPTFIVPTEGKIIVVFAVDFSDVTDKALARVFLQEFVEAQRLVRNAPPVTYSREVPPTLSKVQYNHKPNLAGFISFAVEDRHVQGAGKEKVVTLLTGFRAYLHYHIKCSKTYLHMRMRRKVAS 201          
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Match: A0A6H5L1H1_9PHAE (Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H1_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 8.080e-66
Identity = 110/274 (40.15%), Postives = 170/274 (62.04%), Query Frame = 3
Query:   51 KGLIFLEAKSSILYEQLHPRILSDKREPCEITFNDFDDVLFKIFCSQETPNIVQVHIAMKNVEELKKMGSDDLLNTLFPGM---EIAPADGFNYALQFDCDNLPGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRKAEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPVSYSKEPPGELAGLPTSFSTDTAGYIAFALEERHVAGAAKEKAITLLTGFRNYLHYHIKCSKTYLHMRMRKRVAG 863
            +G IFL++ + IL   + PR++  KREPCE+  +DFDDV++ +       + + + IA+   +++   G  ++L T + GM   ++ P  G N  +  + DN    A Q L S++EL+R++   P DRAF+AL   +  +VP   I +RK E VYV P A +V ++F +DF +  +RA+A+ +L EFV+AQR    +PP +++ + P EL  +P   S    G+++F +  +HV    +EK ITLLTGFRNYLHYH+K +KTY+HMRMRKRV G
Sbjct:    8 QGQIFLDSFNPILENAIKPRLMEGKREPCELKVSDFDDVMYTVEVPPNNLSTLSLSIAINGWDQISSNGGSEVLATKYQGMISPQVRP--GHNLTITTNLDNPTVPAEQLLKSLTELKRNLMAAPFDRAFDALREGRGGSVPPAAIPWRKNEVVYVVPQADRVTIIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVG 279          
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Match: A0A7S2RYF9_9STRA (Arp2/3 complex 34 kDa subunit n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYF9_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.010e-62
Identity = 117/281 (41.64%), Postives = 172/281 (61.21%), Query Frame = 3
Query:   48 AKGLIFLEAKSSILYEQLHPRILSD--KREPCEITFNDFDDVLFKIFCSQETPNIVQVHIAMKNVEELKK--MGSDDLLNTLFPGMEIAPADGFNYALQFDCDNLPGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRKAEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPVSYS--KEPPGELAGLP--TSFSTDTAGYIAFALEERHVAGAAK-EKAITLLTGFRNYLHYHIKCSKTYLHMRMRKRVAG 863
            A+G+IFL+ ++ IL E +  R+  D  +REPCE+T  DFDDV  K+  + +  N V VHI+M  + +  K  +   ++++  +PGM I P  GF++A+ FD D+ P D    LN V+  RR++   P+ +AF  L     + +P M IE R  E +++ P A +  +++ + F + TDRALARV LQ+F +    V +APP  YS  K PP E+  LP    +ST T G+I+F +   HV+  AK +K+  +L  FRNYLHYHIK SKTYLHMRMR++V G
Sbjct:   18 AEGMIFLKPQNMILEEAIGTRLFDDPPRREPCEVTMADFDDVKLKVVVTPDRLNFVAVHISMGPLGKRLKTDLYGQEVMDETYPGMSITPDAGFDFAIGFDLDSPPEDPQVLLNKVANFRRYLLAAPITKAFKGLKNGTGATLPLMHIETRPNEAMFIKPGADRCTIIYALSFPEETDRALARVMLQQFAKESSKVNSAPPCQYSEAKNPPMEVRELPGIDKYST-TCGFISFVVFPSHVSSDAKFDKSAAMLANFRNYLHYHIKASKTYLHMRMRRKVQG 297          
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Match: T0RSJ4_SAPDV (Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSJ4_SAPDV)

HSP 1 Score: 201 bits (512), Expect = 7.580e-60
Identity = 119/274 (43.43%), Postives = 172/274 (62.77%), Query Frame = 3
Query:   57 LIFLEAKSSILYEQLHPRI---LSDKREPCEITFNDFDDVLFKIFCSQETPNIVQVHIAMKNVEELKKMGSDDLLNTLFPGMEI-APADGFNYALQFDCDNL-PGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRKAEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPVSYSKEPPGELAGLPT-SFSTDTAGYIAFALEERHVAGAAKE-KAITLLTGFRNYLHYHIKCSKTYLHMRMRKRV 857
            +IFLE +S I+ E L  R+        EP EI   DFDDV + +   + T   + V ++   V EL K G+ ++L +++P   + AP  GF+  +  + D + P +A   ++ +S L+R++   P D  F AL A  SS++  + I +R+ E +YV P A ++V+VF V F D TD+A+AR++LQEF EA+R V  APPVS+ K+PP EL G+P    STD  GY++FA+ + H+   AK  KA TL+ GFRNYLHYHIK SKTY+H+RMRKRV
Sbjct:    1 MIFLENESKIVQEVLQGRLGEAAPRPVEPLEIRLCDFDDVQYDLSIQENT---LSVSMSYPPVVELVKFGAANMLASVYPEFTLTAPKPGFDLTMVANVDAITPENATNVIDRISLLKRNLLSAPFDHCFLALHADASSSLSPIQIPFRRQETIYVLPQADRIVIVFSVAFQDKTDQAIARIFLQEFAEARRHVNNAPPVSFGKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDTDAKRAKACTLIQGFRNYLHYHIKASKTYMHIRMRKRV 271          
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Match: A0A067CQD1_SAPPC (Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQD1_SAPPC)

HSP 1 Score: 200 bits (509), Expect = 2.140e-59
Identity = 118/274 (43.07%), Postives = 171/274 (62.41%), Query Frame = 3
Query:   57 LIFLEAKSSILYEQLHPRILSDKR---EPCEITFNDFDDVLFKIFCSQETPNIVQVHIAMKNVEELKKMGSDDLLNTLFPGMEI-APADGFNYALQFDCDNL-PGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRKAEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPVSYSKEPPGELAGLPT-SFSTDTAGYIAFALEERHVAGAAKE-KAITLLTGFRNYLHYHIKCSKTYLHMRMRKRV 857
            +IFLE +S I+ E L  R+        EP EI   DFDDV + +   + T   + V ++   V EL K G+ ++L  ++P   + AP  GF+  +  + D + P +A   ++ ++ L+R++   P D  F AL A  SS++  + I +R+ E +YV P A ++V+VF V F D TD+A+AR++LQEF EA+R V  APPVS+ K+PP EL G+P    STD  GY++FA+ + H+   AK  KA TL+ GFRNYLHYHIK SKTY+H+RMRKRV
Sbjct:    1 MIFLENESKIVQEVLQGRLGETAPRPVEPLEIRLCDFDDVQYDLSIQENT---LSVSMSYPPVVELVKFGAANMLANVYPEFTLTAPKPGFDMTMVANVDAITPENATNVIDRIALLKRNLLSAPFDHCFLALHADASSSLSPIQIPFRRQETIYVLPQADRIVIVFSVAFQDKTDQAIARIFLQEFAEARRHVNNAPPVSFGKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDSDAKRAKACTLVQGFRNYLHYHIKASKTYMHIRMRKRV 271          
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Match: K3WLT3_GLOUD (Arp2/3 complex 34 kDa subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLT3_GLOUD)

HSP 1 Score: 196 bits (499), Expect = 6.560e-58
Identity = 113/274 (41.24%), Postives = 172/274 (62.77%), Query Frame = 3
Query:   57 LIFLEAKSSILYEQLHPRILSDKR---EPCEITFNDFDDVLFKIFCSQETPNIVQVHIAMKNVEELKKMGSDDLLNTLFPGME-IAPADGFNYALQFDCDNL-PGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRKAEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPVSYSKEPPGELAGLP-TSFSTDTAGYIAFALEERHVAGAAKE-KAITLLTGFRNYLHYHIKCSKTYLHMRMRKRV 857
            ++FLE ++ I+ E L  RI        +P EI   DFDDV + +  +    N++ + +A    + L+ +G+  + +T +P    +AP  GF++ALQ + D + P +A  F+  ++ L+R+I   P ++ F AL    SS++  + I +R++E +YV P A ++V+V+ V F D TD+A+ARV+LQEFV+ +RTV  APP ++SK+PP EL G P    S+D  GY++ A+   HV   AK  KA +L+ G RNYLHYHIK SKTYLH+RMRKRV
Sbjct:    1 MLFLENENKIIKEVLEGRIGESAPRPVQPLEIRLCDFDDVQYDVSIAS---NLLTISMAYPPYKSLEGLGAQRMFSTTYPEFSLVAPKAGFDFALQVNVDVITPANATAFIERIASLKRNILAAPFEQCFEALANGTSSSLAPVQIPFRRSETMYVLPQADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNGAPPAAFSKDPPLELRGAPGLRNSSDLVGYLSLAIFPTHVDTPAKRVKAASLIQGLRNYLHYHIKASKTYLHIRMRKRV 271          
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Match: A0A024U441_9STRA (Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U441_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.510e-56
Identity = 119/276 (43.12%), Postives = 169/276 (61.23%), Query Frame = 3
Query:   57 LIFLEAKSSILYEQLHPRI---LSDKREPCEITFNDFDDVLFKIFCSQETPNIVQVHIAMKNVEELKKMGSDDLLNTLFPGMEI-APADGFNYALQFDCDNL-PGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRKAEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPVSYSKEPPGEL---AGLPTSFSTDTAGYIAFALEERHV-AGAAKEKAITLLTGFRNYLHYHIKCSKTYLHMRMRKRV 857
            +IFLE +S I+ E L  R+        +P EI   DFDDV + I         + V +A +   EL+K G+ ++L  ++P  ++ AP  GF   L  + D + P +A   +N ++ L+R+I G P+D  F AL A Q+  +  + I +R+ E +Y+ P   ++V+VF V F D TD+A+ARV+LQEF EA+R V  APPVS+ K+PP EL   +GL      D  GY++FA+ + H+   A +EKA TLL GFRNYLHYHIK SKTYLH+RMRKRV
Sbjct:    1 MIFLENESKIVQEVLLGRLGEAAPRPVDPLEIRLCDFDDVQYDISIQGTA---LSVSMAYRPYIELQKFGAANMLAKVYPEFQVTAPKPGFELTLVANVDTITPQNAASVVNRIASLKRNILGAPLDHCFLALHAGQAKVLSPIQIPFRRQETIYILPQDDRIVIVFSVAFQDKTDQAIARVFLQEFAEARRHVNNAPPVSFGKDPPLELRAVSGLRPC--ADHVGYLSFAIFKSHIDTDAKREKACTLLQGFRNYLHYHIKASKTYLHIRMRKRV 271          
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Match: G4Z955_PHYSP (Arp2/3 complex 34 kDa subunit n=30 Tax=Peronosporaceae TaxID=4777 RepID=G4Z955_PHYSP)

HSP 1 Score: 192 bits (487), Expect = 4.130e-56
Identity = 114/275 (41.45%), Postives = 171/275 (62.18%), Query Frame = 3
Query:   57 LIFLEAKSSILYEQLHPRILSDKRE----PCEITFNDFDDVLFKIFCSQETPNIVQVHIAMKNVEELKKMGSDDLLNTLFPGMEIAPAD-GFNYALQFDCDNL-PGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRKAEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPVSYSKEPPGELAGLP-TSFSTDTAGYIAFALEERHVAGAAKE-KAITLLTGFRNYLHYHIKCSKTYLHMRMRKRV 857
            ++FLE+++ I+ E L  R L +K      P EI   DFDDV + +  +    N++ V +A    + L+ +G   +    +P  ++  A  GF+++LQ + D + P +A+ F++ +S L+R+I G P ++ F AL    +S++  + I YR+ E +YV P A ++V+V+ V F D TD+A+ARV+LQEFV+ +RTV  APPV++ K+PP EL G P    S D  GY++ A+   HV    K  KA TL+ G RNYLHYHIK SKTYLH+RMRKRV
Sbjct:    1 MLFLESENKIIKEVLEGR-LGEKAPRPVPPLEIRLCDFDDVQYDLSIAD---NLLTVSMAYPPYKTLEGLGVTQMFAATYPECQLVAAKAGFDFSLQVNVDLITPANASSFIDRISVLKRNILGAPFEQCFEALQNGNASSLGPVQIPYRRNETIYVLPQADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPVAFGKDPPLELRGAPGLRNSPDLVGYLSIAIFPTHVDTTEKRIKAATLVQGLRNYLHYHIKASKTYLHIRMRKRV 271          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10421.456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0XD73_9STRA1.600e-9750.73Arp2/3 complex 34 kDa subunit n=1 Tax=Chromulina n... [more]
A0A812XCT5_SYMMI1.530e-7657.35Arp2/3 complex 34 kDa subunit n=1 Tax=Symbiodinium... [more]
A0A482RR48_9ARCH9.470e-7063.22Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6H5L1H1_9PHAE8.080e-6640.15Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus s... [more]
A0A7S2RYF9_9STRA2.010e-6241.64Arp2/3 complex 34 kDa subunit n=2 Tax=Rhizochromul... [more]
T0RSJ4_SAPDV7.580e-6043.43Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia ... [more]
A0A067CQD1_SAPPC2.140e-5943.07Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniac... [more]
K3WLT3_GLOUD6.560e-5841.24Arp2/3 complex 34 kDa subunit n=1 Tax=Globisporang... [more]
A0A024U441_9STRA1.510e-5643.12Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces ... [more]
G4Z955_PHYSP4.130e-5641.45Arp2/3 complex 34 kDa subunit n=30 Tax=Peronospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10421contigD-dudresnayi_contig10421:8461..9581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue1.2e-48
Seed eggNOG ortholog112098.XP_008613270.1
Preferred nameARPC2
KEGG koko:K05758
KEGG Pathwayko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04144,map04666,map04810,map05100,map05130,map05131,map05132
GOsGO:0000001,GO:0000147,GO:0000226,GO:0000302,GO:0000902,GO:0000904,GO:0001667,GO:0001726,GO:0002009,GO:0002102,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005102,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005856,GO:0005884,GO:0005885,GO:0005886,GO:0005912,GO:0005924,GO:0005925,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006898,GO:0006909,GO:0006928,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0009636,GO:0009653,GO:0009719,GO:0009790,GO:0009888,GO:0009986,GO:0009987,GO:0010026,GO:0010033,GO:0010035,GO:0010090,GO:0010243,GO:0010591,GO:0010592,GO:0010631,GO:0010638,GO:0010720,GO:0010769,GO:0010770,GO:0010810,GO:0010811,GO:0012505,GO:0012506,GO:0014070,GO:0014910,GO:0014911,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016477,GO:0019894,GO:0019899,GO:0022411,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030041,GO:0030042,GO:0030054,GO:0030055,GO:0030139,GO:0030141,GO:0030154,GO:0030155,GO:0030175,GO:0030334,GO:0030335,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030834,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031143,GO:0031252,GO:0031253,GO:0031256,GO:0031334,GO:0031344,GO:0031346,GO:0031410,GO:0031941,GO:0031982,GO:0032271,GO:0032273,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032535,GO:0032587,GO:0032879,GO:0032880,GO:0032940,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0032991,GO:0033043,GO:0033157,GO:0033267,GO:0033554,GO:0034021,GO:0034314,GO:0034599,GO:0034614,GO:0034622,GO:0035254,GO:0035556,GO:0035650,GO:0035690,GO:0036119,GO:0036120,GO:0036194,GO:0036195,GO:0036477,GO:0038093,GO:0038094,GO:0038096,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042542,GO:0042995,GO:0043005,GO:0043025,GO:0043197,GO:0043198,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043254,GO:0043624,GO:0043679,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044297,GO:0044306,GO:0044309,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045010,GO:0045202,GO:0045335,GO:0045472,GO:0045595,GO:0045597,GO:0045785,GO:0046677,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048468,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051015,GO:0051049,GO:0051050,GO:0051094,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051258,GO:0051261,GO:0051270,GO:0051272,GO:0051489,GO:0051491,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051716,GO:0060284,GO:0060341,GO:0060429,GO:0060491,GO:0061024,GO:0061645,GO:0061825,GO:0061826,GO:0061827,GO:0061830,GO:0061834,GO:0061835,GO:0065003,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070301,GO:0070358,GO:0070528,GO:0070848,GO:0070849,GO:0070887,GO:0071236,GO:0071310,GO:0071362,GO:0071363,GO:0071364,GO:0071407,GO:0071417,GO:0071437,GO:0071495,GO:0071801,GO:0071803,GO:0071840,GO:0071933,GO:0071944,GO:0072752,GO:0090066,GO:0090087,GO:0090130,GO:0090132,GO:0090313,GO:0090314,GO:0090316,GO:0090558,GO:0090626,GO:0090723,GO:0090725,GO:0097223,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:0097435,GO:0097440,GO:0097447,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098657,GO:0098793,GO:0098794,GO:0098805,GO:0098858,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:0150034,GO:1900024,GO:1900026,GO:1901355,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901879,GO:1902115,GO:1902117,GO:1902743,GO:1902745,GO:1902903,GO:1902905,GO:1903533,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:1905924,GO:1905926,GO:1990089,GO:1990090,GO:2000145,GO:2000147,GO:2000249,GO:2000251,GO:2000812,GO:2000814
EggNOG free text desc.Arp2/3 complex-mediated actin nucleation
EggNOG OGsCOG4690@1,KOG2826@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size865
Cds size822
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10421.456.1prot_D-dudresnayi_contig10421.456.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10421 8461..9540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.640482-CDS-D-dudresnayi_contig10421:8460..90731622927541.640482-CDS-D-dudresnayi_contig10421:8460..9073Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10421 8461..9073 -
1690556799.8906703-CDS-D-dudresnayi_contig10421:8460..90731690556799.8906703-CDS-D-dudresnayi_contig10421:8460..9073Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10421 8461..9073 -
1622927541.6522107-CDS-D-dudresnayi_contig10421:9149..92371622927541.6522107-CDS-D-dudresnayi_contig10421:9149..9237Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10421 9150..9237 -
1690556799.9028373-CDS-D-dudresnayi_contig10421:9149..92371690556799.9028373-CDS-D-dudresnayi_contig10421:9149..9237Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10421 9150..9237 -
1622927541.665145-CDS-D-dudresnayi_contig10421:9299..93431622927541.665145-CDS-D-dudresnayi_contig10421:9299..9343Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10421 9300..9343 -
1690556799.9121604-CDS-D-dudresnayi_contig10421:9299..93431690556799.9121604-CDS-D-dudresnayi_contig10421:9299..9343Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10421 9300..9343 -
1622927541.677973-CDS-D-dudresnayi_contig10421:9402..94671622927541.677973-CDS-D-dudresnayi_contig10421:9402..9467Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10421 9403..9467 -
1690556799.9207778-CDS-D-dudresnayi_contig10421:9402..94671690556799.9207778-CDS-D-dudresnayi_contig10421:9402..9467Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10421 9403..9467 -
1622927541.755283-CDS-D-dudresnayi_contig10421:9528..95401622927541.755283-CDS-D-dudresnayi_contig10421:9528..9540Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10421 9529..9540 -
1690556799.9297805-CDS-D-dudresnayi_contig10421:9528..95401690556799.9297805-CDS-D-dudresnayi_contig10421:9528..9540Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10421 9529..9540 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927541.7672384-UTR-D-dudresnayi_contig10421:9540..95811622927541.7672384-UTR-D-dudresnayi_contig10421:9540..9581Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10421 9541..9581 -
1690556799.9419894-UTR-D-dudresnayi_contig10421:9540..95811690556799.9419894-UTR-D-dudresnayi_contig10421:9540..9581Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10421 9541..9581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10421.456.1

>prot_D-dudresnayi_contig10421.456.1 ID=prot_D-dudresnayi_contig10421.456.1|Name=mRNA_D-dudresnayi_contig10421.456.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=274bp
MAAKGLIFLEAKSSILYEQLHPRILSDKREPCEITFNDFDDVLFKIFCSQ
ETPNIVQVHIAMKNVEELKKMGSDDLLNTLFPGMEIAPADGFNYALQFDC
DNLPGDANQFLNSVSELRRHIAGGPMDRAFNALLAKQSSNVPKMVIEYRK
AEKVYVCPAASKVVVVFQVDFADVTDRALARVYLQEFVEAQRTVRTAPPV
SYSKEPPGELAGLPTSFSTDTAGYIAFALEERHVAGAAKEKAITLLTGFR
NYLHYHIKCSKTYLHMRMRKRVAG
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mRNA from alignment at D-dudresnayi_contig10421:8461..9581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10421.456.1 ID=mRNA_D-dudresnayi_contig10421.456.1|Name=mRNA_D-dudresnayi_contig10421.456.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1121bp|location=Sequence derived from alignment at D-dudresnayi_contig10421:8461..9581- (Desmarestia dudresnayi DdudBR16 monoicous)
GAGACATTGTTCTAGCAAGAATTTCTTATTGATAGCTTTAAATGGCAGCT AAAGTCAGTTATTTATTTTTGAGTGATTTAGAATTATTGTTAATTATAAT TTTATTTGTTTCAGGGGTTGATTTTCCTCGAGGCCAAGAGCTCGATCTTA TATGAACAGTTACATCCTAGAATTCTTAGGTAGGGTTATTTATTCTCTTT TGTAGATACAATGGATAATTTTATTGATTTTTATATAGTGATAAGAGAGA GCCTTGTGAGATTACTTTCAACGACTTCGATGGTAAGTAACACACAGTAA ATTATTTTTATGTTACAACGTCTCATAAAAGCTCTTGCTTGTAGATGTAC TATTCAAAATCTTCTGTTCACAAGAAACACCTAATATTGTTCAAGTGCAC ATTGCAATGAAGAATGTTGAAGAGCTTAAAAAGTAAGAATAATCTTTCTA CAGTACCCACAGCTGCTGCCATGTGTCTAATATTATAATAATTATACTGT CACTATAGAATGGGTTCTGATGATCTGTTAAATACATTATTCCCTGGTAT GGAGATTGCTCCGGCGGATGGATTCAACTATGCATTACAATTTGATTGCG ACAATCTCCCGGGGGATGCCAACCAGTTCCTGAACTCCGTCAGTGAACTG CGGCGACATATTGCAGGCGGTCCTATGGATCGTGCTTTCAATGCTTTATT AGCAAAACAAAGCAGTAATGTACCAAAGATGGTGATTGAATATAGAAAGG CAGAGAAAGTGTACGTGTGCCCGGCCGCCTCTAAAGTGGTGGTGGTGTTC CAGGTGGACTTCGCTGACGTCACAGACCGCGCCTTAGCTCGTGTTTATTT ACAAGAATTTGTTGAAGCTCAGCGTACAGTACGTACTGCGCCACCAGTAA GTTACAGTAAAGAACCACCAGGAGAGTTGGCAGGACTGCCCACAAGCTTC AGTACAGACACCGCGGGATACATTGCCTTCGCCCTGGAGGAGCGTCACGT GGCAGGTGCTGCGAAAGAGAAGGCTATCACATTGCTCACAGGTTTCCGCA ACTATCTGCACTACCACATCAAGTGCTCGAAGACGTATCTGCACATGCGC ATGCGGAAGAGAGTGGCAGGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10421:8461..9581-

>mRNA_D-dudresnayi_contig10421.456.1 ID=mRNA_D-dudresnayi_contig10421.456.1|Name=mRNA_D-dudresnayi_contig10421.456.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at D-dudresnayi_contig10421:8461..9581- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGCAGCTAAAATGGCAGCTAAAGGGTTGATTTTCCTCGAGGCCAAGAG
CTCGATCTTATATGAACAGTTACATCCTAGAATTCTTAGGGGTTGATTTT
CCTCGAGGCCAAGAGCTCGATCTTATATGAACAGTTACATCCTAGAATTC
TTAGTGATAAGAGAGAGCCTTGTGAGATTACTTTCAACGACTTCGATGTG
ATAAGAGAGAGCCTTGTGAGATTACTTTCAACGACTTCGATGATGTACTA
TTCAAAATCTTCTGTTCACAAGAAACACCTAATATTGTTCAAGTGCACAT
TGCAATGAAGAATGTTGAAGAGCTTAAAAAATGTACTATTCAAAATCTTC
TGTTCACAAGAAACACCTAATATTGTTCAAGTGCACATTGCAATGAAGAA
TGTTGAAGAGCTTAAAAAAATGGGTTCTGATGATCTGTTAAATACATTAT
TCCCTGGTATGGAGATTGCTCCGGCGGATGGATTCAACTATGCATTACAA
TTTGATTGCGACAATCTCCCGGGGGATGCCAACCAGTTCCTGAACTCCGT
CAGTGAACTGCGGCGACATATTGCAGGCGGTCCTATGGATCGTGCTTTCA
ATGCTTTATTAGCAAAACAAAGCAGTAATGTACCAAAGATGGTGATTGAA
TATAGAAAGGCAGAGAAAGTGTACGTGTGCCCGGCCGCCTCTAAAGTGGT
GGTGGTGTTCCAGGTGGACTTCGCTGACGTCACAGACCGCGCCTTAGCTC
GTGTTTATTTACAAGAATTTGTTGAAGCTCAGCGTACAGTACGTACTGCG
CCACCAGTAAGTTACAGTAAAGAACCACCAGGAGAGTTGGCAGGACTGCC
CACAAGCTTCAGTACAGACACCGCGGGATACATTGCCTTCGCCCTGGAGG
AGCGTCACGTGGCAGGTGCTGCGAAAGAGAAGGCTATCACATTGCTCACA
GGTTTCCGCAACTATCTGCACTACCACATCAAGTGCTCGAAGACGTATCT
GCACATGCGCATGCGGAAGAGAGTGGCAGGCAATGGGTTCTGATGATCTG
TTAAATACATTATTCCCTGGTATGGAGATTGCTCCGGCGGATGGATTCAA
CTATGCATTACAATTTGATTGCGACAATCTCCCGGGGGATGCCAACCAGT
TCCTGAACTCCGTCAGTGAACTGCGGCGACATATTGCAGGCGGTCCTATG
GATCGTGCTTTCAATGCTTTATTAGCAAAACAAAGCAGTAATGTACCAAA
GATGGTGATTGAATATAGAAAGGCAGAGAAAGTGTACGTGTGCCCGGCCG
CCTCTAAAGTGGTGGTGGTGTTCCAGGTGGACTTCGCTGACGTCACAGAC
CGCGCCTTAGCTCGTGTTTATTTACAAGAATTTGTTGAAGCTCAGCGTAC
AGTACGTACTGCGCCACCAGTAAGTTACAGTAAAGAACCACCAGGAGAGT
TGGCAGGACTGCCCACAAGCTTCAGTACAGACACCGCGGGATACATTGCC
TTCGCCCTGGAGGAGCGTCACGTGGCAGGTGCTGCGAAAGAGAAGGCTAT
CACATTGCTCACAGGTTTCCGCAACTATCTGCACTACCACATCAAGTGCT
CGAAGACGTATCTGCACATGCGCATGCGGAAGAGAGTGGCAGGC
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