mRNA_D-dudresnayi_contig10312.340.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10312.340.1
Unique NamemRNA_D-dudresnayi_contig10312.340.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10312.340.1 vs. uniprot
Match: A0A6H5KR89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR89_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.770e-20
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   46 TDKFGGTVVNFREQEKETFFKSKGIEGDVDSFNWDELRRNTREIENLQKAAVQRYWKKQEANN-GHDDRYAPR 261
            T K G  V NFRE+EKETFFKSKGIEGDVDSF+WDELRRNT EIE LQ+ AV++YW+ +  +  G   RY  R
Sbjct:   23 TRKLGAAVDNFREREKETFFKSKGIEGDVDSFDWDELRRNTDEIEQLQREAVEQYWRDKGGDQRGRGARYPGR 95
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10312.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KR89_9PHAE7.770e-2064.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10312contigD-dudresnayi_contig10312:8843..10723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size640
Cds size264
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10312.340.1prot_D-dudresnayi_contig10312.340.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10312 9218..10723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.0012984-UTR-D-dudresnayi_contig10312:8842..92171622927530.0012984-UTR-D-dudresnayi_contig10312:8842..9217Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10312 8843..9217 -
1690556794.7186596-UTR-D-dudresnayi_contig10312:8842..92171690556794.7186596-UTR-D-dudresnayi_contig10312:8842..9217Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10312 8843..9217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.0156198-CDS-D-dudresnayi_contig10312:9217..93941622927530.0156198-CDS-D-dudresnayi_contig10312:9217..9394Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10312 9218..9394 -
1690556794.7274745-CDS-D-dudresnayi_contig10312:9217..93941690556794.7274745-CDS-D-dudresnayi_contig10312:9217..9394Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10312 9218..9394 -
1622927530.029169-CDS-D-dudresnayi_contig10312:10636..107231622927530.029169-CDS-D-dudresnayi_contig10312:10636..10723Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10312 10637..10723 -
1690556794.73558-CDS-D-dudresnayi_contig10312:10636..107231690556794.73558-CDS-D-dudresnayi_contig10312:10636..10723Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10312 10637..10723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10312.340.1

>prot_D-dudresnayi_contig10312.340.1 ID=prot_D-dudresnayi_contig10312.340.1|Name=mRNA_D-dudresnayi_contig10312.340.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=88bp
DRNKEAGDGKRGQVTTDKFGGTVVNFREQEKETFFKSKGIEGDVDSFNWD
ELRRNTREIENLQKAAVQRYWKKQEANNGHDDRYAPR*
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mRNA from alignment at D-dudresnayi_contig10312:8843..10723-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10312.340.1 ID=mRNA_D-dudresnayi_contig10312.340.1|Name=mRNA_D-dudresnayi_contig10312.340.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1881bp|location=Sequence derived from alignment at D-dudresnayi_contig10312:8843..10723- (Desmarestia dudresnayi DdudBR16 monoicous)
GACAGAAATAAAGAGGCGGGAGACGGAAAGCGTGGGCAGGTGACAACGGA
CAAGTTTGGAGGGACTGTGGTGAACTTCAGAGAGCAGGTGGGAGGAGGAA
GGATTGGTGCTGTTGGGGGGGGAATGGCGGGTATTTTTTTTTTATATTAT
TGTTTTTCCCATCCCATTTATTTTCCTCACCCTGTTGTTTCTCCAGCTCC
ATCTTTTAGAAGGAAGGATTAGAAGTTGATTAAATAGAGCAACTGGGTAC
TACTGTTGTTGATGTTGTTGTTGTTGTACGTTTGATACCTCTTACGTGTT
GTGCTTACCTCTGTGATCCGTTAGGGAAGTCTGGGTTCCTACCATGAGCT
ACAGGGATTTCTCGTGTTGTGGATGGCATTAACCATTTGATTGTTGGCAT
TTTGTCCGCGGAAGGGCGGGGTGGGGTGGTTGGGGAGGCGAGTTTAGATA
ATTTCAAAAAATTTCCTTGAAAAACGAAAAAAAAAAAAAAAAAAGCTCGG
TGGTCTCCGTAGCTTGCGACCACAGAATTTCTTATCTAATTAGGATAGAA
GATTCAGCACTAACTTTGAGTACGCTCCTCGATTTTTTAGGGTAGAAATT
ACCATTTTTTTTACGTGCAGACAACAACAATGGTTGACAACAACAACAAC
GCCATACGAGGTTCAACCGCATCTACTTCGGAGAACCTTCTCTCGGGATA
TTCGTTACCCCGAGCTTCGGCCTCTTGGTCTCTGCATACGTTCCGCCGGT
CTTTTTGTTTTTTTGTTGACGGAATTGCAAAAAAACGCGATATGTTGATA
CGACTACGTAATACCGGTATATTGTTTTGTGTCTCAGGATCTCCGCGATC
CATACGATCTCGCGAATGCGACATGGATAAGTTGGTACACTAGACAATAG
GAGAAAACGGTCGCTACCTTAGGAGATAAATGGTGGCCACAAAAGGCGAA
ACAGGAAGGGGATAAGATAAGCAAGAAGTTTTAAAGGTAAGATATGGCAA
GGCATGGCAAAGACGTAAAGAGCGCCCAAATGTTAGAGGCGTCTCTGTTA
GGAGTAGGAACGGTGGTCCGTCTCGAAAGGGAAGCGTGTTCAATGGCCAA
ATGACTAAGGCAAGCAACAAATGATGAGTACGCCTTTCATGCGAGTCGTC
GAACACCTCACGGCACTTCGCGCTTGGTGCACGCGATGTCTGCCTGGTCG
GTAAAAACCCGACGTGCTCCATCCCGGCATTGTAGGGATGCGAGGAACTA
TGGTCATACGACTACGGCCATGCATGAAATGAGTACACCCCCCCCCCCCT
CCCCCTCCCCTCCATGTGTTTAATCTCAGGAGAAGGAGACTTTTTTCAAG
AGCAAAGGGATCGAGGGAGACGTTGACAGTTTCAATTGGGACGAGCTGCG
GCGCAATACGCGGGAGATCGAAAACCTTCAGAAGGCGGCCGTCCAGCGGT
ACTGGAAGAAGCAGGAGGCAAACAACGGCCACGACGACCGTTACGCGCCA
AGATGATGCCCTCTGCTGTACAAAGATGTAGGTTGACGGGTCAAATTTCA
TCAAGCCGTCAAAGCCTTTTGCTTGGCGTTACTAAGACTAGTTTAGTGTA
GGGGCTCCTTGACTGACCGTCTGTCAAGGCCTATCTTGACGCTAGTATAC
TAGGTTTAGTGTAGGGATTGCTTGACTGACCGTCCGTCAAGGCCTGTCTT
GACGTTAATATACTAGTTGTAGTGTAGGGGTTCCTTGACTAACCGTCCGT
CAATGCCTCTCTTGACGTTACTATACTAGTTTTAGTGTAGGAATTTTTTG
ACTGACCGCCGTCAAGGGGTAAGACGGCCGTCAACCGACATCATGATATA
GGGGGAGATGAGTGACAAATATGGAAGGCGT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10312:8843..10723-

>mRNA_D-dudresnayi_contig10312.340.1 ID=mRNA_D-dudresnayi_contig10312.340.1|Name=mRNA_D-dudresnayi_contig10312.340.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at D-dudresnayi_contig10312:8843..10723- (Desmarestia dudresnayi DdudBR16 monoicous)
GACAGAAATAAAGAGGCGGGAGACGGAAAGCGTGGGCAGGTGACAACGGA
CAAGTTTGGAGGGACTGTGGTGAACTTCAGAGAGCAGGACAGAAATAAAG
AGGCGGGAGACGGAAAGCGTGGGCAGGTGACAACGGACAAGTTTGGAGGG
ACTGTGGTGAACTTCAGAGAGCAGGAGAAGGAGACTTTTTTCAAGAGCAA
AGGGATCGAGGGAGACGTTGACAGTTTCAATTGGGACGAGCTGCGGCGCA
ATACGCGGGAGATCGAAAACCTTCAGAAGGCGGCCGTCCAGCGGTACTGG
AAGAAGCAGGAGGCAAACAACGGCCACGACGACCGTTACGCGCCAAGATG
AGAGAAGGAGACTTTTTTCAAGAGCAAAGGGATCGAGGGAGACGTTGACA
GTTTCAATTGGGACGAGCTGCGGCGCAATACGCGGGAGATCGAAAACCTT
CAGAAGGCGGCCGTCCAGCGGTACTGGAAGAAGCAGGAGGCAAACAACGG
CCACGACGACCGTTACGCGCCAAGATGA
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