mRNA_D-dudresnayi_contig10147.199.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10147.199.1
Unique NamemRNA_D-dudresnayi_contig10147.199.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Match: D1GJQ3_FUCVE (Photosystem I reaction center subunit IV n=2 Tax=Fucus TaxID=3011 RepID=D1GJQ3_FUCVE)

HSP 1 Score: 111 bits (277), Expect = 5.700e-31
Identity = 50/59 (84.75%), Postives = 57/59 (96.61%), Query Frame = 1
Query:    1 MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNTANFKIEELI 177
            M+ KGAKVRILRKESYWYND+GTV V+EQ+TSNYPVLVRF+KVNYSGTNTANFK+EEL+
Sbjct:    1 MIEKGAKVRILRKESYWYNDVGTVAVIEQATSNYPVLVRFIKVNYSGTNTANFKLEELV 59          
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Match: A0A8F0FAS1_9PHAE (Photosystem I reaction center subunit IV n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAS1_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.590e-30
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1
Query:    1 MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNTANFKIEELIDI 183
            MV K AKVRILRKESYWYNDIGTVVVVEQ+ SNYPVLVRFVKVNYSGTNTANFK+EEL+ I
Sbjct:    1 MVTKAAKVRILRKESYWYNDIGTVVVVEQTGSNYPVLVRFVKVNYSGTNTANFKVEELLVI 61          
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Match: A0A1I9LW11_9PHAE (Photosystem I reaction center subunit IV n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW11_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.770e-29
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNTANFKIEEL 174
            MV KG KVRILRKESYWYNDIGTVVVVE+S SNYP+LVRFVKVNYSGTNTANFK EE+
Sbjct:    1 MVEKGTKVRILRKESYWYNDIGTVVVVEKSASNYPILVRFVKVNYSGTNTANFKAEEV 58          
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Match: D1J723_ECTSI (Photosystem I reaction center subunit IV n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J723_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 5.360e-29
Identity = 48/58 (82.76%), Postives = 55/58 (94.83%), Query Frame = 1
Query:    1 MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNTANFKIEEL 174
            MV KGAKVRILRKESYWYND+GTVVV+++  +NYPVL+RFVKVNYSGTNTANFK+EEL
Sbjct:    1 MVTKGAKVRILRKESYWYNDVGTVVVIDKKAANYPVLIRFVKVNYSGTNTANFKLEEL 58          
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Match: A0A0S0G9P7_COSCS (Photosystem I reaction center subunit IV n=22 Tax=Laminariales TaxID=2886 RepID=A0A0S0G9P7_COSCS)

HSP 1 Score: 105 bits (263), Expect = 7.620e-29
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1
Query:    1 MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNTANFKIEELI 177
            MV KGAKVRILRKESYWYND+GTVV+VE+  SNYPVLVRFVKVNYSGTNT+NFK EEL+
Sbjct:    1 MVEKGAKVRILRKESYWYNDVGTVVIVEKVASNYPVLVRFVKVNYSGTNTSNFKQEELV 59          
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Match: UPI001FA77104 (photosystem I subunit IV n=1 Tax=Silvetia siliquosa TaxID=93837 RepID=UPI001FA77104)

HSP 1 Score: 105 bits (262), Expect = 1.110e-28
Identity = 46/61 (75.41%), Postives = 56/61 (91.80%), Query Frame = 1
Query:    1 MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNTANFKIEELIDI 183
            M+ KGAKVRILRKESYWYN++GTV ++E  TS+YPVLVRF+KVNYSGTNTANFK+EEL+ +
Sbjct:    1 MIKKGAKVRILRKESYWYNNVGTVAIIEPDTSSYPVLVRFIKVNYSGTNTANFKLEELVSV 61          
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Match: A0A7T8G5J8_SCYLO (Photosystem I reaction center subunit IV n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5J8_SCYLO)

HSP 1 Score: 104 bits (260), Expect = 2.240e-28
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNTANFKIEEL 174
            MV +GAKVRILRKESYWYNDIGTV V+E+  SNYP+LVRFVKVNYSGTNTANFK+EEL
Sbjct:    2 MVDRGAKVRILRKESYWYNDIGTVAVIEKGGSNYPILVRFVKVNYSGTNTANFKLEEL 59          
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Match: A0A1L2F1M7_9PHAE (PsaE n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1M7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.440e-28
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 1
Query:    1 MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNTANFKIEELI 177
            M+ KG+KVRILRKESYWYND+GTV  +EQ  SNYP++VRF+KVNYSGTNTANFK+EEL+
Sbjct:    1 MIEKGSKVRILRKESYWYNDLGTVAAIEQGGSNYPIVVRFIKVNYSGTNTANFKLEELV 59          
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Match: A0A8F0JZ58_9PHAE (Photosystem I reaction center subunit IV n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ58_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.800e-27
Identity = 45/59 (76.27%), Postives = 55/59 (93.22%), Query Frame = 1
Query:    1 MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNTANFKIEELI 177
            M+ KG+KVR+LRKESYW+ND+G+VV+VE+  SNYPVLVRF KVNYSGTNTANFK+EEL+
Sbjct:    1 MIEKGSKVRVLRKESYWFNDVGSVVIVEKIASNYPVLVRFTKVNYSGTNTANFKLEELV 59          
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Match: A0A6B7EUS6_9PHAE (Photosystem I reaction center subunit IV n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUS6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 5.170e-27
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1
Query:    1 MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNTANFKIEELIDI 183
            M+ +GAKVRILRKESYWYNDIGTVV  E+  +NYPV+VRFVKVNYSGTNTANFK EEL+ +
Sbjct:    1 MLDRGAKVRILRKESYWYNDIGTVVTTEKKAANYPVIVRFVKVNYSGTNTANFKEEELVAV 61          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10147.199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1GJQ3_FUCVE5.700e-3184.75Photosystem I reaction center subunit IV n=2 Tax=F... [more]
A0A8F0FAS1_9PHAE1.590e-3088.52Photosystem I reaction center subunit IV n=1 Tax=D... [more]
A0A1I9LW11_9PHAE3.770e-2987.93Photosystem I reaction center subunit IV n=1 Tax=P... [more]
D1J723_ECTSI5.360e-2982.76Photosystem I reaction center subunit IV n=2 Tax=E... [more]
A0A0S0G9P7_COSCS7.620e-2984.75Photosystem I reaction center subunit IV n=22 Tax=... [more]
UPI001FA771041.110e-2875.41photosystem I subunit IV n=1 Tax=Silvetia siliquos... [more]
A0A7T8G5J8_SCYLO2.240e-2884.48Photosystem I reaction center subunit IV n=5 Tax=S... [more]
A0A1L2F1M7_9PHAE6.440e-2876.27PsaE n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2... [more]
A0A8F0JZ58_9PHAE1.800e-2776.27Photosystem I reaction center subunit IV n=1 Tax=C... [more]
A0A6B7EUS6_9PHAE5.170e-2777.05Photosystem I reaction center subunit IV n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10147contigD-dudresnayi_contig10147:5811..5996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue3.1e-21
Seed eggNOG ortholog2880.D1J723
Preferred namepsaE
KEGG koko:K02693
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0010033,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs2E6G4@1,2S9HV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.468723-CDS-D-dudresnayi_contig10147:5810..59961622927515.468723-CDS-D-dudresnayi_contig10147:5810..5996Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10147 5811..5996 -
1690556787.9423165-CDS-D-dudresnayi_contig10147:5810..59961690556787.9423165-CDS-D-dudresnayi_contig10147:5810..5996Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10147 5811..5996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10147.199.1prot_D-dudresnayi_contig10147.199.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10147 5811..5996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10147.199.1

>prot_D-dudresnayi_contig10147.199.1 ID=prot_D-dudresnayi_contig10147.199.1|Name=mRNA_D-dudresnayi_contig10147.199.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=62bp
MVAKGAKVRILRKESYWYNDIGTVVVVEQSTSNYPVLVRFVKVNYSGTNT
ANFKIEELIDI*
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mRNA from alignment at D-dudresnayi_contig10147:5811..5996-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10147.199.1 ID=mRNA_D-dudresnayi_contig10147.199.1|Name=mRNA_D-dudresnayi_contig10147.199.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at D-dudresnayi_contig10147:5811..5996- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTAGCTAAAGGAGCAAAAGTACGTATATTAAGAAAAGAATCATATTG GTATAATGATATTGGTACGGTTGTGGTTGTAGAGCAATCGACCTCGAATT ACCCTGTTTTAGTAAGATTTGTAAAAGTCAACTATAGTGGTACAAATACA GCAAATTTTAAAATAGAAGAATTAATAGATATTTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10147:5811..5996-

>mRNA_D-dudresnayi_contig10147.199.1 ID=mRNA_D-dudresnayi_contig10147.199.1|Name=mRNA_D-dudresnayi_contig10147.199.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at D-dudresnayi_contig10147:5811..5996- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTAGCTAAAGGAGCAAAAGTACGTATATTAAGAAAAGAATCATATTG
GTATAATGATATTGGTACGGTTGTGGTTGTAGAGCAATCGACCTCGAATT
ACCCTGTTTTAGTAAGATTTGTAAAAGTCAACTATAGTGGTACAAATACA
GCAAATTTTAAAATAGAAGAATTAATAGATATTTAGATGGTAGCTAAAGG
AGCAAAAGTACGTATATTAAGAAAAGAATCATATTGGTATAATGATATTG
GTACGGTTGTGGTTGTAGAGCAATCGACCTCGAATTACCCTGTTTTAGTA
AGATTTGTAAAAGTCAACTATAGTGGTACAAATACAGCAAATTTTAAAAT
AGAAGAATTAATAGATATTTAG
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