mRNA_D-dudresnayi_contig10008.46.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10008.46.1
Unique NamemRNA_D-dudresnayi_contig10008.46.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10008.46.1 vs. uniprot
Match: D8LNI7_ECTSI (SRP_SPB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI7_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 5.630e-44
Identity = 84/113 (74.34%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    1 QAPLDKFSAKLPWNKDREELKNMKMQKKVLDVLSPQQRKQPETIRAGHRQAIADRAACTLEDVNMLLASYRELKAMHGWLSTRRKRKEKIPTSQEEMTLMAADPSGTTLVQFM 339
            + PLDKFSAKLPWNK REEL+ MKMQKKVL+ L+P QRK PE+IR GHRQ IADRA  T EDVN  LA+YRELKAMHGWLSTRRKRKE+IP++QEE+ +MA DPSGT L+ FM
Sbjct:  109 EEPLDKFSAKLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTEDVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHVMATDPSGTMLMNFM 221
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10008.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNI7_ECTSI5.630e-4474.34SRP_SPB domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10008contigD-dudresnayi_contig10008:2798..7270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog2880.D8LNI7
EggNOG free text desc.Signal peptide binding domain
EggNOG OGs2AVD2@1,2RZW3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSignal recognition particle, SRP54 subunit, M-domain
Ec32 orthologEc-24_002990.1
Exons2
Model size1781
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10008.46.1prot_D-dudresnayi_contig10008.46.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10008 2864..6014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927501.8554294-UTR-D-dudresnayi_contig10008:2797..28631622927501.8554294-UTR-D-dudresnayi_contig10008:2797..2863Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10008 2798..2863 +
1690556779.5209262-UTR-D-dudresnayi_contig10008:2797..28631690556779.5209262-UTR-D-dudresnayi_contig10008:2797..2863Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10008 2798..2863 +
1622927501.8925538-UTR-D-dudresnayi_contig10008:6014..72701622927501.8925538-UTR-D-dudresnayi_contig10008:6014..7270Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10008 6015..7270 +
1690556779.5790343-UTR-D-dudresnayi_contig10008:6014..72701690556779.5790343-UTR-D-dudresnayi_contig10008:6014..7270Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10008 6015..7270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927501.8702257-CDS-D-dudresnayi_contig10008:2863..29711622927501.8702257-CDS-D-dudresnayi_contig10008:2863..2971Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10008 2864..2971 +
1690556779.5360694-CDS-D-dudresnayi_contig10008:2863..29711690556779.5360694-CDS-D-dudresnayi_contig10008:2863..2971Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10008 2864..2971 +
1622927501.881349-CDS-D-dudresnayi_contig10008:5663..60141622927501.881349-CDS-D-dudresnayi_contig10008:5663..6014Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10008 5664..6014 +
1690556779.545213-CDS-D-dudresnayi_contig10008:5663..60141690556779.545213-CDS-D-dudresnayi_contig10008:5663..6014Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10008 5664..6014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10008.46.1

>prot_D-dudresnayi_contig10008.46.1 ID=prot_D-dudresnayi_contig10008.46.1|Name=mRNA_D-dudresnayi_contig10008.46.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=153bp
MKMQKKVLDVLSPQQRKQPETIRAGHRQAIADRAACTLEDVNMLLASYRE
LKAMHGWLSTRRKRKEKIPTSQEEMTLMAADPSGTTLVQFMWDNYETFFV
VWLHVPFFFLFFSAAGEWSTCCKEKYRSVLGFILHSFCGTSMRDVRSREC
FV*
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mRNA from alignment at D-dudresnayi_contig10008:2798..7270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10008.46.1 ID=mRNA_D-dudresnayi_contig10008.46.1|Name=mRNA_D-dudresnayi_contig10008.46.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4473bp|location=Sequence derived from alignment at D-dudresnayi_contig10008:2798..7270+ (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGCACCGCTAGACAAATTTTCGGCAAAGCTGCCGTGGAACAAGGACAG
GGAGGAGCTGAAGAATATGAAGATGCAGAAGAAGGTGCTGGACGTCCTTT
CTCCTCAGCAGAGGAAACAGCCCGAGACCATTAGGGCGGGCCACCGTCAA
GCCATCGCCGACAGAGCTGCATGCGTGAGTACGATTCAATTCGATCTTCC
CGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCC
GCCGCGCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCGCTCCCGCGCCA
CCNNNNNNNNNNCCCCCCCCAACCCCTCCCCGCCAAAGCTCCTTGCGTGT
GTCCTACTCAATTCCCTCTTCCCCCCCCCCCCCCCCCCCCCCGCCCTCTG
CCCTTTGGGGTTGGCGTCGGTTGGCAACGACGCTGTAAAACACATCACTC
GCTGCGTGTGCTAGACAACCAAGGTGCCGTTTTGTTTTTCCTTACTGTTT
TGTTTTGGCGGTTACCCTGGCTGGTTTTATAGTTAGATCATATTGTGCGA
GGTGGAGAACCTGAACTCCGCGCAAGTGGGATGATATCACGTAGTGGTAG
TGTATATATATAGGACGCCTGGGGTTAGCCGCAGTCTCGATCTAAATCCC
CTCCCTTTTTTCCCCCTCGGTGGAGACAGCTAGTCCGAAAAACGTGTATG
ATGGTATGTTGTAGGGATTATACTGTCGTTCGCACTATAAATGGCTTTTT
GAGGATGGGGGAGGCGGGGTGGGGGGGGCGTATTGATTTTTGCGAAATAG
AGGGATGGCATACTCATTTGTTTTGCGAACTAGAGAGGTATATACTGACT
GTCCATACCGTTGTTGTACGGCTGGACGTGGGACAAGGTTATTGAAATCG
AACCCAAACGGTTATTACTGTCTTTCGCGTTGGATTTTGTGATCAAATAA
TAATAGATAGTAGATAGTAAGCAGTAGGCAGTATACGTGCGATGGAAATA
GAAGAATGATATTTTGAAGCGACTTCATATCTCGGTGGATGTGACGGCGA
TGGAAAATGAGCAGGATGAAAACACGAGTAGGTAAAGGCAAAACGTATGC
CCACGTGTAAAGTATGAACAAATACACGTAAAATAAAAAGCCTGAAGCGG
CACCTAAATGTTGAGATCATCAAAGGGCAGGCGGACAATCCGCAGTAGAA
AAATAGAAGAGTAGTACAACGAAAACAGTAGTATCATATCGCAGATTCCA
TCGCAAGCAAATACTGTACCAAATAACCCAAAGAAGAGCTGGCTGCGATG
TGGCTGGGCAGAGTATAGAGATGATACAACAACAAGAGTACAACCACAAC
AAGAAACATTGTTGTAGAGCAATAAAACGCGCAACAACGCTGAAATCATG
AGAGCGAATCGCAAGGCCAAATGACACAGCTATAAAAACATGCGTGTGGA
GTATAGACAGCAGGGGAGAAACGTCACCAGCAACAATCGTATTGTGAGGG
GCACTGGTCAAGGACGTGAGGCATAAATGTATAGAGCACAGAAGAGCTGC
TGCGATGTGACTGGGCAGAGTATAGAGATGATACAACAACAGAAGTACGA
CCACAACTAACTACAAAAAACTGTTTTTGTAGAGCAATACAAGCAACACT
GGAGTGCTGTGCCTCTTACAGTAGCAGGACAATAGTAGTAAAGTACTATT
ATAGTAGGATGTTACTGGTATTTATGATAGATATGGTGGTAGTACGAACT
ATGCTAATATTGTTACAACAACAGAAGAAGTAAAAAAAACAACGAAATAC
GTACAGAAAGGGGCCGTGTCGCGCCCGAAAAACAAATTAATTGTATAATA
AACTTGTAGCTGAGGGATAAGGAGTTGGCCGAGATGTAGTACAGGTCACC
AGTTTGAATCCCACCTCCTCTCGAAAAAAAAAGCAAAAAAGCGGTAAAAA
AACCGCGGTAGAAACACCGCAGTAAAAAAAGTGCGGTAAGAAAAGTGCGG
TCAAGAGTCTTTAGTGTTTTTTTTAGTCGCAACAGAGAACTAAACCCTAA
AGGGATTTAGAATGGTACGGCACCCACGAGAGAGTTACGTAGTGTACCCA
TTGCTGTTTCTGGAAGTGGCCACACCAGGAAACAAACTATCCATTCGAAG
CTGTCATCCATATGCAAAAGAGTACGCACAAAGTGCCGAAGCCCGCCTCA
CAAGTGGTTCTCAGTAGAATGATGCAGCTCACCCTTCATGCGAATGGCCG
AACACCCCACGGCGCTTCGCGCCTTGTGCACGCGATGTCTGCCTGGTCGG
TGAAATAATGTGTTCCGTCCCGGCAGTATAGGAATGCGAGGGCCTATGGT
CATACGACTACGGCCACACATGAAGGGACTACACCTCCCCCCCCGCCTGT
CTTAATGGTGGAATTTTGATAAGGAGGCGTTTGTGTTTTGTCCGCAGAAC
GCTTCCGCCCCCCAGCGCCCCCCCCCCCCCGACTAGGGATAAGATGGGCA
AAACTTTTTTATGTAAGATTTGGTAAAAACATAGAGAGCGCCCAAAATGT
TGGTGCCTCTATTAGGAGTAGGAATGATTATCCGTCTGGAAAGGGATGCG
TGGTCAACGGTCAAATGTCTAAGGCAAACAACAAATGAGTACGCCCCCCC
TCCCCCCCTCCCCCCCTCCCCCCAACCCTCCAACCACACGCTCCAATAGC
CAAATGAAAGGTCGGGGTAGGTTGGGCATCGTTAGTCGCTCCCTTGGAGA
GCAGTGGTCTCGCGGTGAAGGCACGCTAACAATAGGTGCTTCTCTCGTTT
TGGACTCGACACGTTGTGTCTCCGTTGATTGCGGTCGCTCGTGTTGTTGT
TGCTATCCTGCGGCAGACGTTGGAGGATGTAAATATGCTCCTGGCGTCGT
ACCGAGAGCTGAAGGCGATGCACGGGTGGCTTTCGACACGAAGGAAGCGG
AAGGAGAAAATTCCCACCTCACAGGAGGAGATGACCTTGATGGCCGCAGA
CCCCTCCGGCACGACACTCGTGCAGTTCATGTGGGACAATTATGAGACTT
TTTTTGTAGTCTGGCTTCATGTGCCGTTTTTTTTTCTTTTTTTTAGTGCT
GCTGGCGAGTGGAGCACGTGCTGTAAAGAAAAATATCGCTCGGTGTTGGG
GTTTATTTTGCACTCTTTTTGCGGGACATCAATGCGTGACGTGCGCAGTC
GTGAGTGCTTTGTGTAAGGGTGGATGACGGGGACTGTATTGTGGTCGATG
CGTCCCTCTTCACGCCCACACATGTATGTGTATGCAATGTATTCTCTAGA
CTAGACAGAGATAGGTAGGTAGGTAGGTAGGTAGATGGGTAGATTGCTCG
AGATTTTGGTTGATCGTTTGACTAGATGCGTTGGTTGATATATTGATTGA
TTGATTGATTTGCACATGTTTCGCCGATCCGCCCAAGAGTAGGACACGGC
TTGTTTGTCGGTCTACTCGACAGCATGAAGAGGGGGTCGTTAATCTCCAA
GTCACGCTCGTGGCGGCTTTTGGGACATGGCACGAAGTAGACCCGATACT
GGAGACAAGTCTGAACGTTGAGCCGATCGTCACCGAGTGGGCGTTTGCTG
GCGGTGGCCCTCGCAACCACATACGCGTGTATTTGTTGTTTAGGTGCCGG
AGGAGGCCTTGGGCAACCAATAACATTTAGACAGGCACGTATATCATGTA
GACGCATTTCTACGGCTCTTGTGTCGCGTATTGACCGCCAACCGCATGTG
TTCCCTTTCTTATTTTGTTATGTTCTGTTTTATTTCTGTTGTGCTTTACT
TTTTCTTATGTTTTTGTTATACGCCACCAGGAGGGTCAAGAGGGGGAGCT
CTGGCCGAGCAAGTTTCGGCTTCTAAGTGTCACCGCCGTCGTCTCCCACA
TCTCTCCTTAAGTCACTCAAGAAGGCATAGTACAGCTTAAAGGGCGCGTA
GGTAGCTTTGGGTCTCCCTGTTTTTTTCATCACCCAGGAGGATTACTTGT
TTGTGTCGGTGGCCATTATTGTGTTTTGTTTTTGATTGAGCAAATGTGTA
GAGTAAGTTTGTTTGATTGTTTCAAAATCATTCGGCGTTGCGGTGAAGGG
TTTGGATGGGCGTTGTGACGCCGGCTCAGCGGGATTGATCGGTTGGGGTG
GAGGCATCGCGACCGAGCGTCAGGCATAACTTCCGGACGTGGCGTGGGAG
AGGCGTCAAGCCCCTTGGCTCGCGACGAAGAACACGATAGTCGTGGGCTG
CACCCAGTGTCTACGTGGGCGTACTGTTGCCTGTGGCATCTGCCCGGAGC
GCGGATTTGTGCTGTCACAGAGGAATGTGTCAAAACAGGACCACGTAACA
GAGGAACGTACTGTAGTAAACCGGACCAGATCACAGAGAAAATCACGGTA
GTATACAGGACCGAATCACGGAAGAACGTGGTATCCAGGACCAAATCACA
CAACAAACAATACCTATCTAACT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10008:2798..7270+

>mRNA_D-dudresnayi_contig10008.46.1 ID=mRNA_D-dudresnayi_contig10008.46.1|Name=mRNA_D-dudresnayi_contig10008.46.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at D-dudresnayi_contig10008:2798..7270+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGAAGATGCAGAAGAAGGTGCTGGACGTCCTTTCTCCTCAGCAGAGGAA
ACAGCCCGAGACCATTAGGGCGGGCCACCGTCAAGCCATCGCCGACAGAG
CTGCATGCATGAAGATGCAGAAGAAGGTGCTGGACGTCCTTTCTCCTCAG
CAGAGGAAACAGCCCGAGACCATTAGGGCGGGCCACCGTCAAGCCATCGC
CGACAGAGCTGCATGCACGTTGGAGGATGTAAATATGCTCCTGGCGTCGT
ACCGAGAGCTGAAGGCGATGCACGGGTGGCTTTCGACACGAAGGAAGCGG
AAGGAGAAAATTCCCACCTCACAGGAGGAGATGACCTTGATGGCCGCAGA
CCCCTCCGGCACGACACTCGTGCAGTTCATGTGGGACAATTATGAGACTT
TTTTTGTAGTCTGGCTTCATGTGCCGTTTTTTTTTCTTTTTTTTAGTGCT
GCTGGCGAGTGGAGCACGTGCTGTAAAGAAAAATATCGCTCGGTGTTGGG
GTTTATTTTGCACTCTTTTTGCGGGACATCAATGCGTGACGTGCGCAGTC
GTGAGTGCTTTGTGTAAACGTTGGAGGATGTAAATATGCTCCTGGCGTCG
TACCGAGAGCTGAAGGCGATGCACGGGTGGCTTTCGACACGAAGGAAGCG
GAAGGAGAAAATTCCCACCTCACAGGAGGAGATGACCTTGATGGCCGCAG
ACCCCTCCGGCACGACACTCGTGCAGTTCATGTGGGACAATTATGAGACT
TTTTTTGTAGTCTGGCTTCATGTGCCGTTTTTTTTTCTTTTTTTTAGTGC
TGCTGGCGAGTGGAGCACGTGCTGTAAAGAAAAATATCGCTCGGTGTTGG
GGTTTATTTTGCACTCTTTTTGCGGGACATCAATGCGTGACGTGCGCAGT
CGTGAGTGCTTTGTGTAA
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