mRNA_C-australica_Contig_10341.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10341.2.1
Unique NamemRNA_C-australica_Contig_10341.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: UPI000399FF7F (OmpA family protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI000399FF7F)

HSP 1 Score: 120 bits (300), Expect = 9.370e-31
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTLSYN 180
            YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTLSYN
Sbjct:  388 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTLSYN 447
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BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: A0A2D4ZRJ8_9BACT (Cell envelope biogenesis protein OmpA n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A2D4ZRJ8_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 1.290e-22
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTLSYN 180
            YNM+LS +RA +VK YLV KGI SSRI TEGYGETKPIASN SKDGKTRNRRVEL LSYN
Sbjct:  405 YNMKLSKERAQSVKSYLVHKGISSSRITTEGYGETKPIASNASKDGKTRNRRVELKLSYN 464
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BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: UPI0003048956 (OmpA family protein n=1 Tax=Pedobacter arcticus TaxID=752140 RepID=UPI0003048956)

HSP 1 Score: 83.2 bits (204), Expect = 3.300e-17
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165
            YNMQLS+DRANAVK YLV+ G+D+ +I T+GYGET+PIASNT+++G+  NRRVE 
Sbjct:  426 YNMQLSLDRANAVKTYLVNSGVDAKKIATKGYGETRPIASNTTEEGRVANRRVEF 480
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BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: A0A0B8YFD2_9SPHI (Outer membrane porin F n=5 Tax=Pedobacter TaxID=84567 RepID=A0A0B8YFD2_9SPHI)

HSP 1 Score: 82.8 bits (203), Expect = 4.520e-17
Identity = 36/55 (65.45%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165
            YNMQLS+DRANAVK YLV+ G+D+ RI T+GYGE++PIASN +++G+ +NRRVE 
Sbjct:  426 YNMQLSVDRANAVKTYLVNSGVDAKRISTKGYGESRPIASNATEEGRVKNRRVEF 480
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BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: A0A4U1C5L7_9SPHI (OmpA family protein n=1 Tax=Pedobacter cryophilus TaxID=2571271 RepID=A0A4U1C5L7_9SPHI)

HSP 1 Score: 82.4 bits (202), Expect = 6.180e-17
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165
            YNMQLSIDRANAVK YLV+ G+D+ R+ T+GYGET+PIASN +++G+  NRRVE 
Sbjct:  424 YNMQLSIDRANAVKTYLVNSGVDAKRVMTKGYGETRPIASNATEEGRVANRRVEF 478
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BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: UPI00190CCFB5 (OmpA family protein n=1 Tax=Pedobacter segetis TaxID=2793069 RepID=UPI00190CCFB5)

HSP 1 Score: 82.4 bits (202), Expect = 6.190e-17
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165
            YNMQLSIDRANAVK YLV+ G+D+ RI T+GYGET+PIASN +++G+  NRRVE 
Sbjct:  425 YNMQLSIDRANAVKTYLVNSGVDAKRIATKGYGETRPIASNATEEGRELNRRVEF 479
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BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: A0A419S8H7_9SPHI (Flagellar motor protein MotB n=1 Tax=Pelobium manganitolerans TaxID=1842495 RepID=A0A419S8H7_9SPHI)

HSP 1 Score: 82.0 bits (201), Expect = 8.500e-17
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165
            YNMQLSIDRANAVK YLV+ G+D+ ++ T+GYGET+PIASN +++G+  NRRVE 
Sbjct:  427 YNMQLSIDRANAVKTYLVNSGVDAKKVSTKGYGETRPIASNATEEGRVANRRVEF 481
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BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: UPI0019ADF8E2 (OmpA family protein n=1 Tax=Pseudopedobacter sp. TaxID=1936787 RepID=UPI0019ADF8E2)

HSP 1 Score: 81.6 bits (200), Expect = 1.170e-16
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVEL 165
            YNMQLSIDRANAVK YLV+ G+D+ +I T+GYGET+PIASN +++G+  NRRVE 
Sbjct:  429 YNMQLSIDRANAVKTYLVNSGVDAKKIATKGYGETRPIASNATEEGRIANRRVEF 483
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BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: UPI001991B4E1 (OmpA family protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=UPI001991B4E1)

HSP 1 Score: 75.1 bits (183), Expect = 1.410e-16
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    4 NMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTLSYN 180
            N++LS DRA+AVK YL+SKG+  SR+  +GYGE+KP++SN +++GK  NRRVE T+  N
Sbjct:   10 NLKLSSDRADAVKAYLISKGVSDSRVTAKGYGESKPLSSNDTEEGKQNNRRVEFTILKN 68
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BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Match: A0A1F4C4V5_9PROT (OmpA-like domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4C4V5_9PROT)

HSP 1 Score: 78.6 bits (192), Expect = 2.120e-16
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 YNMQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRRVELTL 171
            YN +LS+ RAN+VK YLVSKGI+++RI TEG GET+P++SN +KDG+ +NRRVE+ +
Sbjct:  159 YNQKLSVRRANSVKNYLVSKGIEANRIYTEGKGETQPVSSNKTKDGRAKNRRVEIEV 215
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10341.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000399FF7F9.370e-31100.00OmpA family protein n=1 Tax=Balneola vulgaris TaxI... [more]
A0A2D4ZRJ8_9BACT1.290e-2281.67Cell envelope biogenesis protein OmpA n=3 Tax=Bact... [more]
UPI00030489563.300e-1767.27OmpA family protein n=1 Tax=Pedobacter arcticus Ta... [more]
A0A0B8YFD2_9SPHI4.520e-1765.45Outer membrane porin F n=5 Tax=Pedobacter TaxID=84... [more]
A0A4U1C5L7_9SPHI6.180e-1767.27OmpA family protein n=1 Tax=Pedobacter cryophilus ... [more]
UPI00190CCFB56.190e-1769.09OmpA family protein n=1 Tax=Pedobacter segetis Tax... [more]
A0A419S8H7_9SPHI8.500e-1765.45Flagellar motor protein MotB n=1 Tax=Pelobium mang... [more]
UPI0019ADF8E21.170e-1667.27OmpA family protein n=1 Tax=Pseudopedobacter sp. T... [more]
UPI001991B4E11.410e-1655.93OmpA family protein n=1 Tax=Cytophagales bacterium... [more]
A0A1F4C4V5_9PROT2.120e-1661.40OmpA-like domain-containing protein n=1 Tax=Betapr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10341contigC-australica_Contig_10341:643..825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121104.AQXH01000001_gene2198
PFAMsOMP_b-brl,OmpA,TSP_3
Model size183
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.46e-29
EggNOG OGsCOG2885@1|root,COG2885@2|Bacteria,4NE8J@976|Bacteroidetes,1IWKW@117747|Sphingobacteriia
DescriptionThrombospondin type 3 repeat
Cds size177
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586772.021943-CDS-C-australica_Contig_10341:642..8191682586772.021943-CDS-C-australica_Contig_10341:642..819Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10341 643..819 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586772.0299764-UTR-C-australica_Contig_10341:819..8251682586772.0299764-UTR-C-australica_Contig_10341:819..825Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10341 820..825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10341.2.1prot_C-australica_Contig_10341.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10341 643..819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10341.2.1

>prot_C-australica_Contig_10341.2.1 ID=prot_C-australica_Contig_10341.2.1|Name=mRNA_C-australica_Contig_10341.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=59bp
MQLSIDRANAVKQYLVSKGIDSSRIETEGYGETKPIASNTSKDGKTRNRR
VELTLSYN*
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mRNA from alignment at C-australica_Contig_10341:643..825-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10341.2.1 ID=mRNA_C-australica_Contig_10341.2.1|Name=mRNA_C-australica_Contig_10341.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=183bp|location=Sequence derived from alignment at C-australica_Contig_10341:643..825- (Chrysoparadoxa australica CS_1217)
TATAACATGCAACTGTCTATTGATAGAGCTAATGCGGTAAAGCAATACCT
TGTATCAAAAGGAATTGATTCTTCGCGCATTGAAACTGAAGGATATGGCG
AAACGAAGCCTATTGCCTCTAATACCTCAAAAGATGGTAAAACGAGGAAC
CGTAGAGTTGAATTAACTTTGAGTTATAATTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_10341:643..825-

>mRNA_C-australica_Contig_10341.2.1 ID=mRNA_C-australica_Contig_10341.2.1|Name=mRNA_C-australica_Contig_10341.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=177bp|location=Sequence derived from alignment at C-australica_Contig_10341:643..825- (Chrysoparadoxa australica CS_1217)
ATGCAACTGTCTATTGATAGAGCTAATGCGGTAAAGCAATACCTTGTATC
AAAAGGAATTGATTCTTCGCGCATTGAAACTGAAGGATATGGCGAAACGA
AGCCTATTGCCTCTAATACCTCAAAAGATGGTAAAACGAGGAACCGTAGA
GTTGAATTAACTTTGAGTTATAATTAA
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