prot_C-australica_Contig_9853.1.1 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-australica_Contig_9853.1.1
Unique Nameprot_C-australica_Contig_9853.1.1
Typepolypeptide
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length246
Homology
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BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Match: A0A222E4E5_9RHOB (Anaphase-promoting complex subunit 4 WD40 domain protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E4E5_9RHOB)

HSP 1 Score: 441 bits (1135), Expect = 8.740e-145
Identity = 227/246 (92.28%), Postives = 233/246 (94.72%), Query Frame = 0 
Query:    1 FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDTGAQKWRRATDEPVSALRYSPDGGTLAFAMSGSVAMHAADTGVFLREMDLADEEFVEISGLAFTRDGGGLIVGATNTPGLRWHVDTGALAERIGPALGGRLLGLTGAGDAAVFVAKSGTAIQVFDLEGGNLLRNIDKYRFADVALTPDGTRRIGHVGGAAPGLILVDPDSEATRVILQRDGDFVTGLAFSPDSTRLA 246
            FTLP LRPL+SISLDTKGPVRALAFSSDSTWLAVAQAGQA GVSVLQVDTGAQKWRR+TDEPVSALRYSPDGGTLAFAMSGSVAMH A+TGVFLREMD ADEE VEISGLAFTRDGGGLI GA NT GLRWHVDTGALAERIGPALGG+LLGLT AGDAAVFVAKSGTAIQVFDLEGGNLLRN+DKYRFADVALTPDGTR IGHVGGAAPGLILVDPDSEATR  LQR GDFV+GLAFSPDSTRLA
Sbjct:  454 FTLPALRPLSSISLDTKGPVRALAFSSDSTWLAVAQAGQASGVSVLQVDTGAQKWRRSTDEPVSALRYSPDGGTLAFAMSGSVAMHVAETGVFLREMDFADEELVEISGLAFTRDGGGLIAGAKNTSGLRWHVDTGALAERIGPALGGQLLGLTAAGDAAVFVAKSGTAIQVFDLEGGNLLRNMDKYRFADVALTPDGTRLIGHVGGAAPGLILVDPDSEATRATLQRAGDFVSGLAFSPDSTRLA 699
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BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Match: A0A239H9N3_9RHOB (WD40 repeat n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239H9N3_9RHOB)

HSP 1 Score: 265 bits (678), Expect = 1.650e-78
Identity = 140/246 (56.91%), Postives = 171/246 (69.51%), Query Frame = 0 
Query:    1 FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDTGAQKWRRATDEPVSALRYSPDGGTLAFAMSGSVAMHAADTGVFLREMDLADEEFVEISGLAFTRDGGGLIVGATNTPGLRWHVDTGALAERIGPALGGRLLGLTGAGDAAVFVAKSGTAIQVFDLEGGNLLRNIDKYRFADVALTPDGTRRIGHVGGAAPGLILVDPDSEATRVILQRDGDFVTGLAFSPDSTRLA 246
            FTLP L PL S++L+  GP  ALAFS D TWLAVAQ+G+   VS L+ +TG ++WR ATDE                     VA+H A+TG +LR M+ A +    ISGLAFTRDG GLI GA +T GL W +D+G L  RIGPA+GGRLLG++ AGDAAVFV+KSG  +QVFDL+GG L R +D + F DVALTPDG R +G VGGAAPGLIL DP +     +L+RDG+FV+ LAFSPDSTRLA
Sbjct:  454 FTLPTLGPLFSVALNEDGPASALAFSPDGTWLAVAQSGKVSAVSGLRGETGERQWRMATDEXXXXXXXXXXXXXXXXXXXXXVAVHVAETGAYLRGMEPAGDAPAAISGLAFTRDGSGLIAGAADTFGLHWQLDSGTLTGRIGPAMGGRLLGVSAAGDAAVFVSKSGGGVQVFDLDGGGLRRGLDAHEFTDVALTPDGIRLMGLVGGAAPGLILADPVNGVAHSVLKRDGEFVSALAFSPDSTRLA 699
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A222E4E5_9RHOB8.740e-14592.28Anaphase-promoting complex subunit 4 WD40 domain p... [more]
A0A239H9N3_9RHOB1.650e-7856.91WD40 repeat n=1 Tax=Antarctobacter heliothermus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 6..137
e-value: 1.4E-11
score: 45.9
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 152..246
e-value: 1.8E-6
score: 29.0
NoneNo IPR availableSUPERFAMILY82171DPP6 N-terminal domain-likecoord: 15..244

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9853contigC-australica_Contig_9853:23..760 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9853.1.1mRNA_C-australica_Contig_9853.1.1Chrysoparadoxa australica CS_1217mRNAC-australica_Contig_9853 23..760 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-australica_Contig_9853.1.1 ID=prot_C-australica_Contig_9853.1.1|Name=mRNA_C-australica_Contig_9853.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=246bp
FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDT
GAQKWRRATDEPVSALRYSPDGGTLAFAMSGSVAMHAADTGVFLREMDLA
DEEFVEISGLAFTRDGGGLIVGATNTPGLRWHVDTGALAERIGPALGGRL
LGLTGAGDAAVFVAKSGTAIQVFDLEGGNLLRNIDKYRFADVALTPDGTR
RIGHVGGAAPGLILVDPDSEATRVILQRDGDFVTGLAFSPDSTRLA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf