mRNA_C-australica_Contig_9853.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Match: A0A222E4E5_9RHOB (Anaphase-promoting complex subunit 4 WD40 domain protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E4E5_9RHOB) HSP 1 Score: 441 bits (1135), Expect = 8.740e-145 Identity = 227/246 (92.28%), Postives = 233/246 (94.72%), Query Frame = 1 Query: 1 FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDTGAQKWRRATDEPVSALRYSPDGGTLAFAMSGSVAMHAADTGVFLREMDLADEEFVEISGLAFTRDGGGLIVGATNTPGLRWHVDTGALAERIGPALGGRLLGLTGAGDAAVFVAKSGTAIQVFDLEGGNLLRNIDKYRFADVALTPDGTRRIGHVGGAAPGLILVDPDSEATRVILQRDGDFVTGLAFSPDSTRLA 738
FTLP LRPL+SISLDTKGPVRALAFSSDSTWLAVAQAGQA GVSVLQVDTGAQKWRR+TDEPVSALRYSPDGGTLAFAMSGSVAMH A+TGVFLREMD ADEE VEISGLAFTRDGGGLI GA NT GLRWHVDTGALAERIGPALGG+LLGLT AGDAAVFVAKSGTAIQVFDLEGGNLLRN+DKYRFADVALTPDGTR IGHVGGAAPGLILVDPDSEATR LQR GDFV+GLAFSPDSTRLA
Sbjct: 454 FTLPALRPLSSISLDTKGPVRALAFSSDSTWLAVAQAGQASGVSVLQVDTGAQKWRRSTDEPVSALRYSPDGGTLAFAMSGSVAMHVAETGVFLREMDFADEELVEISGLAFTRDGGGLIAGAKNTSGLRWHVDTGALAERIGPALGGQLLGLTAAGDAAVFVAKSGTAIQVFDLEGGNLLRNMDKYRFADVALTPDGTRLIGHVGGAAPGLILVDPDSEATRATLQRAGDFVSGLAFSPDSTRLA 699
BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Match: A0A239H9N3_9RHOB (WD40 repeat n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239H9N3_9RHOB) HSP 1 Score: 265 bits (678), Expect = 1.650e-78 Identity = 140/246 (56.91%), Postives = 171/246 (69.51%), Query Frame = 1 Query: 1 FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDTGAQKWRRATDEPVSALRYSPDGGTLAFAMSGSVAMHAADTGVFLREMDLADEEFVEISGLAFTRDGGGLIVGATNTPGLRWHVDTGALAERIGPALGGRLLGLTGAGDAAVFVAKSGTAIQVFDLEGGNLLRNIDKYRFADVALTPDGTRRIGHVGGAAPGLILVDPDSEATRVILQRDGDFVTGLAFSPDSTRLA 738
FTLP L PL S++L+ GP ALAFS D TWLAVAQ+G+ VS L+ +TG ++WR ATDE VA+H A+TG +LR M+ A + ISGLAFTRDG GLI GA +T GL W +D+G L RIGPA+GGRLLG++ AGDAAVFV+KSG +QVFDL+GG L R +D + F DVALTPDG R +G VGGAAPGLIL DP + +L+RDG+FV+ LAFSPDSTRLA
Sbjct: 454 FTLPTLGPLFSVALNEDGPASALAFSPDGTWLAVAQSGKVSAVSGLRGETGERQWRMATDEXXXXXXXXXXXXXXXXXXXXXVAVHVAETGAYLRGMEPAGDAPAAISGLAFTRDGSGLIAGAADTFGLHWQLDSGTLTGRIGPAMGGRLLGVSAAGDAAVFVSKSGGGVQVFDLDGGGLRRGLDAHEFTDVALTPDGIRLMGLVGGAAPGLILADPVNGVAHSVLKRDGEFVSALAFSPDSTRLA 699 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9853.1.1 >prot_C-australica_Contig_9853.1.1 ID=prot_C-australica_Contig_9853.1.1|Name=mRNA_C-australica_Contig_9853.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=246bp FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDTback to top mRNA from alignment at C-australica_Contig_9853:23..760+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_9853.1.1 ID=mRNA_C-australica_Contig_9853.1.1|Name=mRNA_C-australica_Contig_9853.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=738bp|location=Sequence derived from alignment at C-australica_Contig_9853:23..760+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_9853:23..760+ >mRNA_C-australica_Contig_9853.1.1 ID=mRNA_C-australica_Contig_9853.1.1|Name=mRNA_C-australica_Contig_9853.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=738bp|location=Sequence derived from alignment at C-australica_Contig_9853:23..760+ (Chrysoparadoxa australica CS_1217)back to top |