prot_C-australica_Contig_1000.5.1 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-australica_Contig_1000.5.1
Unique Nameprot_C-australica_Contig_1000.5.1
Typepolypeptide
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length639
Homology
BLAST of mRNA_C-australica_Contig_1000.5.1 vs. uniprot
Match: D7G5T8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5T8_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 7.340e-45
Identity = 136/494 (27.53%), Postives = 196/494 (39.68%), Query Frame = 0
Query:  116 LYSAVRGFLQERQGYSHVWLRDACLPP--------GMLSSELGG-----VHMGALLCTHGSLSVPPLCKKQHWFYQNEEGFSDLQLFSTNPWRALEACLLTMTGASQHFYLECG-------------------------------------------------------------------------------------------------------------------GEGYY----------TDTTDQDQTIEEGVLEILTVMGLEGSGRAVEANWKGLLDTQFLLTKACTEVSGFIQAGGALKQAVCTLSISEQQAREFCELWEMIQVGLTPIPAHEQLGLVRMLSFAVAVARCDAARALPAAGLAGVLEEAAVPVKHGYGEWRNRRGGVHLDFWMKDLSPGDLEAILAKCTVQNNSDRAHHRPVVKLTVGSSHTGGAGIGRFMGQHPELREVEVEWEGMRDIRSLCLAGAEHKSLQSLTLTHNGLGRAGA 471
            LY+  R FL E   + H+W+  AC+PP        G + S  G      +H GAL+     L  PP  +   +  +    +SDL+++ST+PW+ALE  ++ +  +   +    G                                                                                                                   G  +Y            T  +   IE  V E L  +G+ G+    E NW+G+L   F+L K   +V  +  A GALKQA+C+LS+S  QA EF  +W+ +   L P  ++++L ++ +L FAV+VA        P+  +  VL E+ V   H             LD WMKDLSP D   IL   +       A  + +  LTVGSSHT GAG+G F+  HP LRE+E+EWEG+RD+ S+  A  EHKSL  L LTHN +G  GA
Sbjct:  107 LYATARAFLMENPEFQHIWVSAACMPPRLREQKWRGAVPSAAGSNMFEHLHPGALVACDAVLVAPPERESMSYIAEQRARYSDLEMYSTSPWKALEGVIMQLMNSVSFYAFRLGKKLIFAGPYPAYPEEPQPSPLDLRRGSAPASIVGADSPVGGRMATESPVDRAKAAAKLMFSKGTRMGWNSKSDMSAGDSLEDGRWNGWDGGGGRSTAGSTPTASVTTASVSDFSGGRSFYGGGGDVSRRRRSTPTEGSRIERAVAEALDRLGINGTHSPPERNWRGVLQPCFVLRKTRQDVEKYSDAQGALKQAMCSLSVSIDQAEEFFLVWKYL-ASLGPCASNDRLAVLNLLVFAVSVADGYCCPRRPSDFVGRVLAESLVTPGH-------------LDLWMKDLSPDDSRNILRAVS-------AAGKKLSILTVGSSHTAGAGVGSFLRGHPSLRELELEWEGVRDLSSIAQALGEHKSLTRLNLTHNEIGPRGA 579          
BLAST of mRNA_C-australica_Contig_1000.5.1 vs. uniprot
Match: A0A835Z0E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E5_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.250e-39
Identity = 147/524 (28.05%), Postives = 219/524 (41.79%), Query Frame = 0
Query:   41 ASVFYPELSIDHILLLPRASFLPPEGK--PSYHECCGSLQMASEVFFNNPSAQVLYVSSLEGHQLRDT---------DVDEGYPRHLYSAVRGFLQERQGYSHVWLRDACLPPGMLSSELGGVHM----------------GALLCTHGS-----------------------LSVPPLCKKQHWFYQNEEGFSDLQLFSTNPWRALEACLLTMTGASQHFYLECGGEGYYT-----DTTDQDQTIEEGVLEILTVMGLEGSGRAVEANWKGLLDTQFLLTKACTEVSGFIQAGGALKQAVCTLSISEQQAREFCELWEMIQVGLTPIPAH--EQLGLVRMLSFAVAV-ARCDAARALPAAGLAGVLEEA-AVPVKHGYGEWRNRRGGVHLDFWMK-------------DLSPGDLEAILAKCTVQNNSDRAHHR--------PVVKLTVGSSHTGGAGIGRFMGQHPELREVEVEWEGMRDIRSLCLAGAEHKSLQSLTLTHNGLGRAGAECLGEMLMTNSSI 484
            A  F+P LS+D ++ +PR+  L  + K  P Y E    L   ++V   +P+A++LY+S +   ++ D            +      L+ AV  FLQ+   ++ VW    CL  G  ++  GG +M                G +L                            L VPP               +DL+  +  PW ALE   L + GA  H       +  Y+     D  D  + +  G+ E +    L      V  NW+       L+     +VSG  QAGGAL+QA+C++S+++ QA EF   W  +  G     A   E+L ++ +L F VA   R  A    P    A +LE   A+P   G        GG+ LD WM              DLSP DL A+L       ++  A           P+ +LTVGSSH+GGAG+G F+  +  L  +E+EWE +RD+  +C        L +L LTHN +G  G   L   LM N+S+
Sbjct:   19 AGTFFPALSLDTLVFVPRSVLLDGQRKVLPLYGEVQRHLVDYNKVCAKHPNAKLLYLSYIPAERVPDKYGQRRSILGSEERQLWEELFGAVAAFLQDHTEFAFVWAPRCCLG-GAKATLPGGANMLEHCNPLALLVRDAACGTMLXXXXXXXXXXXXXXXXXXXXXXXACDTVLLVPPQRHPGDCASPTMHDHTDLRCCTDYPWVALETIYLHLAGAQGHVLFRYEEQRTYSELVGSDRQDVGKALCGGINETIDAYALCYED-PVRKNWEHANLQNTLMDCVRKDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTWHALLEGRWNACADKAERLAVLNLLHFGVAFFERRIAPPRAPGYAEATLLESLDAIPEGEG--------GGLALDLWMXXXXXXXXXXXXXXDLSPLDLCAVLEAARAHQSTSNAGGAAAGGKPTGPICRLTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEGGVQLARALMENTSL 532          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1000.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5T8_ECTSI7.340e-4527.53Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A835Z0E5_9STRA2.250e-3928.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 537..564
e-value: 51.0
score: 5.1
coord: 481..508
e-value: 0.0053
score: 26.0
coord: 509..536
e-value: 4.1
score: 12.8
coord: 453..480
e-value: 2.7
score: 14.1
NoneNo IPR availablePANTHERPTHR24114LEUCINE RICH REPEAT FAMILY PROTEINcoord: 416..587
NoneNo IPR availablePANTHERPTHR24114:SF30RICH REPEAT AND NACHT DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 416..587
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 420..588
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 370..596
e-value: 2.5E-28
score: 100.4
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 480..503
e-value: 0.017
score: 15.2
coord: 454..474
e-value: 0.52
score: 10.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1000contigC-australica_Contig_1000:11339..13627 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1000.5.1mRNA_C-australica_Contig_1000.5.1Chrysoparadoxa australica CS_1217mRNAC-australica_Contig_1000 11318..13734 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-australica_Contig_1000.5.1 ID=prot_C-australica_Contig_1000.5.1|Name=mRNA_C-australica_Contig_1000.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=639bp
MKDFLDWVPWGNQEKSSETTDSNQGSRCLPYTLTRQCCDTASVFYPELSI
DHILLLPRASFLPPEGKPSYHECCGSLQMASEVFFNNPSAQVLYVSSLEG
HQLRDTDVDEGYPRHLYSAVRGFLQERQGYSHVWLRDACLPPGMLSSELG
GVHMGALLCTHGSLSVPPLCKKQHWFYQNEEGFSDLQLFSTNPWRALEAC
LLTMTGASQHFYLECGGEGYYTDTTDQDQTIEEGVLEILTVMGLEGSGRA
VEANWKGLLDTQFLLTKACTEVSGFIQAGGALKQAVCTLSISEQQAREFC
ELWEMIQVGLTPIPAHEQLGLVRMLSFAVAVARCDAARALPAAGLAGVLE
EAAVPVKHGYGEWRNRRGGVHLDFWMKDLSPGDLEAILAKCTVQNNSDRA
HHRPVVKLTVGSSHTGGAGIGRFMGQHPELREVEVEWEGMRDIRSLCLAG
AEHKSLQSLTLTHNGLGRAGAECLGEMLMTNSSITFLDIRENDIGAAGMR
LLCRGLQRNASLRTLHAEDNSVGNDGVIAVTEAIMRGAGLKVLFLDGNAI
SDLGAKVMTVAVQQCRLLQLVSLRRNLLGNAMKAALLAAWAGREEQWIRC
DNGGGVFSDVDSDDSSENGVIVSPMKKRERETRDYLLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt