Homology
BLAST of mRNA_C-australica_Contig_1000.5.1 vs. uniprot
Match:
D7G5T8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5T8_ECTSI)
HSP 1 Score: 181 bits (460), Expect = 1.320e-44
Identity = 136/494 (27.53%), Postives = 196/494 (39.68%), Query Frame = 3
Query: 453 LYSAVRGFLQERQGYSHVWLRDACLPP--------GMLSSELGG-----VHMGALLCTHGSLSVPPLCKKQHWFYQNEEGFSDLQLFSTNPWRALEACLLTMTGASQHFYLECG-------------------------------------------------------------------------------------------------------------------GEGYY----------TDTTDQDQTIEEGVLEILTVMGLEGSGRAVEANWKGLLDTQFLLTKACTEVSGFIQAGGALKQAVCTLSISEQQAREFCELWEMIQVGLTPIPAHEQLGLVRMLSFAVAVARCDAARALPAAGLAGVLEEAAVPVKHGYGEWRNRRGGVHLDFWMKDLSPGDLEAILAKCTVQNNSDRAHHRPVVKLTVGSSHTGGAGIGRFMGQHPELREVEVEWEGMRDIRSLCLAGAEHKSLQSLTLTHNGLGRAGA 1520
LY+ R FL E + H+W+ AC+PP G + S G +H GAL+ L PP + + + +SDL+++ST+PW+ALE ++ + + + G G +Y T + IE V E L +G+ G+ E NW+G+L F+L K +V + A GALKQA+C+LS+S QA EF +W+ + L P ++++L ++ +L FAV+VA P+ + VL E+ V H LD WMKDLSP D IL + A + + LTVGSSHT GAG+G F+ HP LRE+E+EWEG+RD+ S+ A EHKSL L LTHN +G GA
Sbjct: 107 LYATARAFLMENPEFQHIWVSAACMPPRLREQKWRGAVPSAAGSNMFEHLHPGALVACDAVLVAPPERESMSYIAEQRARYSDLEMYSTSPWKALEGVIMQLMNSVSFYAFRLGKKLIFAGPYPAYPEEPQPSPLDLRRGSAPASIVGADSPVGGRMATESPVDRAKAAAKLMFSKGTRMGWNSKSDMSAGDSLEDGRWNGWDGGGGRSTAGSTPTASVTTASVSDFSGGRSFYGGGGDVSRRRRSTPTEGSRIERAVAEALDRLGINGTHSPPERNWRGVLQPCFVLRKTRQDVEKYSDAQGALKQAMCSLSVSIDQAEEFFLVWKYL-ASLGPCASNDRLAVLNLLVFAVSVADGYCCPRRPSDFVGRVLAESLVTPGH-------------LDLWMKDLSPDDSRNILRAVS-------AAGKKLSILTVGSSHTAGAGVGSFLRGHPSLRELELEWEGVRDLSSIAQALGEHKSLTRLNLTHNEIGPRGA 579
BLAST of mRNA_C-australica_Contig_1000.5.1 vs. uniprot
Match:
A0A835Z0E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E5_9STRA)
HSP 1 Score: 165 bits (418), Expect = 3.680e-39
Identity = 147/524 (28.05%), Postives = 219/524 (41.79%), Query Frame = 3
Query: 228 ASVFYPELSIDHILLLPRASFLPPEGK--PSYHECCGSLQMASEVFFNNPSAQVLYVSSLEGHQLRDT---------DVDEGYPRHLYSAVRGFLQERQGYSHVWLRDACLPPGMLSSELGGVHM----------------GALLCTHGS-----------------------LSVPPLCKKQHWFYQNEEGFSDLQLFSTNPWRALEACLLTMTGASQHFYLECGGEGYYT-----DTTDQDQTIEEGVLEILTVMGLEGSGRAVEANWKGLLDTQFLLTKACTEVSGFIQAGGALKQAVCTLSISEQQAREFCELWEMIQVGLTPIPAH--EQLGLVRMLSFAVAV-ARCDAARALPAAGLAGVLEEA-AVPVKHGYGEWRNRRGGVHLDFWMK-------------DLSPGDLEAILAKCTVQNNSDRAHHR--------PVVKLTVGSSHTGGAGIGRFMGQHPELREVEVEWEGMRDIRSLCLAGAEHKSLQSLTLTHNGLGRAGAECLGEMLMTNSSI 1559
A F+P LS+D ++ +PR+ L + K P Y E L ++V +P+A++LY+S + ++ D + L+ AV FLQ+ ++ VW CL G ++ GG +M G +L L VPP +DL+ + PW ALE L + GA H + Y+ D D + + G+ E + L V NW+ L+ +VSG QAGGAL+QA+C++S+++ QA EF W + G A E+L ++ +L F VA R A P A +LE A+P G GG+ LD WM DLSP DL A+L ++ A P+ +LTVGSSH+GGAG+G F+ + L +E+EWE +RD+ +C L +L LTHN +G G L LM N+S+
Sbjct: 19 AGTFFPALSLDTLVFVPRSVLLDGQRKVLPLYGEVQRHLVDYNKVCAKHPNAKLLYLSYIPAERVPDKYGQRRSILGSEERQLWEELFGAVAAFLQDHTEFAFVWAPRCCLG-GAKATLPGGANMLEHCNPLALLVRDAACGTMLXXXXXXXXXXXXXXXXXXXXXXXACDTVLLVPPQRHPGDCASPTMHDHTDLRCCTDYPWVALETIYLHLAGAQGHVLFRYEEQRTYSELVGSDRQDVGKALCGGINETIDAYALCYED-PVRKNWEHANLQNTLMDCVRKDVSGLCQAGGALRQAICSMSVTQPQAVEFTRTWHALLEGRWNACADKAERLAVLNLLHFGVAFFERRIAPPRAPGYAEATLLESLDAIPEGEG--------GGLALDLWMXXXXXXXXXXXXXXDLSPLDLCAVLEAARAHQSTSNAGGAAAGGKPTGPICRLTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEGGVQLARALMENTSL 532
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1000.5.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.32e-44 / Id = 27.53 Expect = 3.68e-39 / Id = 28.05 Sequence D7G5T8_ECTSI A0A835Z0E5_9STRA
Match Name E-value Identity Description
D7G5T8_ECTSI 1.320e-44 27.53 Hypothetical leucine rich repeat protein n=2 Tax=E... [more] A0A835Z0E5_9STRA 3.680e-39 28.05 Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 2880.D7G5T8 PFAMs LRR_6 Model size 2045 Max annot lvl 2759|Eukaryota Hectar predicted targeting category other localisation Exons 4 Evalue 1.2e-45 EggNOG OGs KOG4308@1|root,KOG4308@2759|Eukaryota Ec32 ortholog description Hypothetical leucine rich repeat protein Ec32 ortholog Ec-12_009090.1 Description interleukin-8 biosynthetic process Cds size 1917 COG category S
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586735.6051183-UTR-C-australica_Contig_1000:11317..11338 1682586735.6051183-UTR-C-australica_Contig_1000:11317..11338 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_1000 11318..11338 - 1682586735.6550598-UTR-C-australica_Contig_1000:13627..13734 1682586735.6550598-UTR-C-australica_Contig_1000:13627..13734 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_1000 13628..13734 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682586735.6161067-CDS-C-australica_Contig_1000:11338..12111 1682586735.6161067-CDS-C-australica_Contig_1000:11338..12111 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1000 11339..12111 - 1682586735.6253266-CDS-C-australica_Contig_1000:12289..12691 1682586735.6253266-CDS-C-australica_Contig_1000:12289..12691 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1000 12290..12691 - 1682586735.6355166-CDS-C-australica_Contig_1000:12810..13239 1682586735.6355166-CDS-C-australica_Contig_1000:12810..13239 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1000 12811..13239 - 1682586735.6451645-CDS-C-australica_Contig_1000:13314..13627 1682586735.6451645-CDS-C-australica_Contig_1000:13314..13627 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_1000 13315..13627 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_1000.5.1
>prot_C-australica_Contig_1000.5.1 ID=prot_C-australica_Contig_1000.5.1|Name=mRNA_C-australica_Contig_1000.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=639bp
MKDFLDWVPWGNQEKSSETTDSNQGSRCLPYTLTRQCCDTASVFYPELSI back to top mRNA from alignment at C-australica_Contig_1000:11318..13734-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1000.5.1 ID=mRNA_C-australica_Contig_1000.5.1|Name=mRNA_C-australica_Contig_1000.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2417bp|location=Sequence derived from alignment at C-australica_Contig_1000:11318..13734- (Chrysoparadoxa australica CS_1217)GAGAAAAGAGACATGGATGGTTGGAGGTGAAAGGAAGGAGGCAGGAGACC
AGGGATGATACGGGTTTCTCTTCAACGGCAGCTGCGGATGGAGTTATAAG
CCTGCTT ATGAAGGACTTCTTGGATTGGGTGCCTTGGGGAAACCAGGAGA
AGAGCAGTGAGACCACGGATAGCAACCAAGGCTCGAGATGCCTCCCGTAC
ACCCTCACTCGCCAGTGCTGCGACACAGCTTCAGTCTTCTACCCCGAGCT
ATCCATCGACCACATTCTGCTCCTACCACGGGCATCCTTCCTGCCGCCAG
AGGGCAAGCCGTCCTACCATGAATGCTGCGGCAGTTTGCAGATGGCTTCA
GAGGTATTCTTCAACAACCCATCAGCACAGGTACTCTACGTGAGTAGTTT
GGAAGGACATCAACTGAGAG GTGCGTCTATGGCCTGCTGCCCAGCTCTGT
CCACTACCAAGGCCCTACTCACCGCCTGTACGCGCCTCTGTTCAGACACA
GACGTTGATGAAGGCTATCCCCGGCACCTGTACAGCGCTGTGAGGGGCTT
CTTGCAGGAGCGCCAGGGATATTCTCACGTATGGTTAAGAGACGCCTGCC
TGCCACCAGGGATGCTCTCATCGGAGCTTGGAGGCGTTCACATGGGCGCA
TTGCTGTGCACTCACGGGAGCTTGTCGGTGCCGCCATTATGCAAGAAGCA
GCACTGGTTCTACCAGAACGAGGAGGGCTTCTCTGACCTGCAGCTGTTCA
GCACCAACCCCTGGAGGGCGTTGGAAGCCTGCCTGCTTACCATGACAGGA
GCTTCCCAGCACTTCTACTTGGAGTGTGGGGGCGAGGGCTATTACACGGA
TACCACAGACCAGGACCAAACGATAGAGGAGGGAGTGCTGGAGATACTGA
CAGTAATGGGGTTGGAGGGCTCAG GTACCTAATGGATCTGATATGGTCTG
ATATGATATGATATGATCTGTGTGTGCCTCATGCCTTGCTGTGTAGACGC
CTGTACCTCACCTCACAGCACCACTGCCACGGGATTGCCACAGGTCGCGC
AGTTGAAGCTAACTGGAAGGGCCTGCTGGACACTCAGTTCCTCCTCACCA
AGGCCTGCACCGAAGTCTCTGGCTTCATTCAGGCTGGAGGCGCCCTCAAG
CAGGCAGTCTGCACGCTCAGCATCTCCGAGCAGCAGGCCCGGGAGTTCTG
CGAGCTCTGGGAGATGATCCAGGTCGGGCTCACCCCAATCCCAGCGCACG
AGCAGCTGGGCCTGGTCAGGATGCTTTCCTTCGCGGTGGCTGTGGCCAGG
TGTGATGCTGCGAGGGCGCTGCCTGCTGCGGGGCTTGCAGGAGTGTTGGA
GGAGGCTGCGGTGCCTGTGAAGCACGGTTATGGGGAGTGGCGGAACAGAC
GAGGGGGGGTTCACCTGGACTTTTGGATGAAGGATTTGTCCCCAG GTATG
GATGGCTTGGGCTGATAACCTCATTTTGAATGAATATTCAGCGTAGACGC
AGACTCCTATGTGCCTGTGACCCAGCATAATCATATCTGACTTTGAAAAA
TCGCAGCCCAAGTGTCGCAAGTGCCCAATCCCTCCAGCTTGTTGCTGACG
CACTGCCTGTGCCAACACCGCAGGTGATCTGGAGGCAATTCTGGCCAAAT
GCACTGTCCAGAACAACAGCGACCGAGCACATCACCGGCCTGTTGTCAAG
CTGACGGTTGGGAGCAGCCACACAGGTGGTGCGGGTATAGGCAGGTTCAT
GGGCCAGCACCCAGAGCTAAGAGAGGTGGAGGTGGAGTGGGAGGGTATGC
GAGACATCAGGTCACTGTGCTTGGCTGGGGCTGAGCACAAGTCTCTGCAG
AGCCTTACGCTGACACATAACGGATTAGGGAGAGCTGGGGCTGAGTGCCT
TGGGGAGATGCTCATGACCAACAGCAGTATAACCTTTTTGGACATTCGAG
AGAACGACATTGGCGCTGCAGGCATGAGGCTCCTCTGCCGCGGGCTGCAG
AGGAACGCGTCTCTGCGCACCCTGCACGCTGAGGATAACTCAGTCGGTAA
CGATGGTGTGATAGCGGTGACGGAAGCCATCATGCGAGGTGCAGGTCTCA
AGGTCCTGTTTCTCGATGGCAACGCTATCTCAGACCTGGGGGCAAAGGTC
ATGACTGTGGCCGTGCAGCAGTGCAGGTTGCTGCAGCTGGTGAGCCTGAG
GAGGAACCTGCTTGGGAATGCCATGAAGGCTGCATTGCTGGCTGCCTGGG
CAGGGAGAGAGGAGCAGTGGATCCGCTGTGATAACGGAGGCGGAGTGTTT
AGTGATGTTGACTCAGATGATAGCTCAGAGAATGGTGTCATTGTGTCACC
GATGAAGAAGAGGGAAAGGGAGACCAGGGACTACCTTCTATTGTGA AGGT
GAATTAATAGAATAGCC back to top Coding sequence (CDS) from alignment at C-australica_Contig_1000:11318..13734-
>mRNA_C-australica_Contig_1000.5.1 ID=mRNA_C-australica_Contig_1000.5.1|Name=mRNA_C-australica_Contig_1000.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1917bp|location=Sequence derived from alignment at C-australica_Contig_1000:11318..13734- (Chrysoparadoxa australica CS_1217) back to top