mRNA_C-australica_Contig_999.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_999.6.1
Unique NamemRNA_C-australica_Contig_999.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_999.6.1 vs. uniprot
Match: D8LFE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE7_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 5.060e-15
Identity = 72/260 (27.69%), Postives = 119/260 (45.77%), Query Frame = 1 
Query:  328 RAKVVGVFNKIDCDGDGRITNWELERYLAWCFGLPFNESFELTFPGPDIGMHLRMDSYGDLYVASKDEDSLACDCKSLMVGMRLLAMNG----SVLTSS-------------KSALKDAHNLLEEMATDDQL-------VLRLQNPQHIIRAVDKWLDLNVSDKVYEVEIKEGVYNTKEDFAATVQKCARHQHKG-LRTFDCTVHMDAAN-FTLTADGDA-VSLLFGTGTHAKANCSSHFNYNMEEGREDTLAAGKVTTP 1026
            R +   +F  +D     RI  WEL R+     G   +   E+ F    +G+ +  D  G + VA  +EDS A +  SLM+GMR+L+++G      LT++             KS+L+   ++LE ++  D         VL +  P  ++   + WLD++VS     V +  GVYNT   +   +Q+  R QH   LR F   V  D A  F + + G A   +L+ +G H+  +C    + + E+     + AG+   P
Sbjct:   98 RQRAYSLFEHLDVTCSHRIYAWELARFFPPAIGCTTDNVVEIAFTCNTLGLTVEEDEEGMVVVAGWEEDSAAAEHPSLMIGMRILSIDGWDLPCALTAAASRHGAPGRDGTFKSSLRKCESVLEALSEGDMEDGENALHVLEVAMPAIVVTKSNTWLDMDVSGVAVAVSVPLGVYNTIGAYFTALQEAGRDQHPTELRHFG--VKFDPAQPFVMLSAGYAPFRILWRSGEHSTQSCRKLLHCSAEQ-----MVAGRFGNP 350
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BLAST of mRNA_C-australica_Contig_999.6.1 vs. uniprot
Match: A0A835ZC92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC92_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.570e-14
Identity = 57/185 (30.81%), Postives = 87/185 (47.03%), Query Frame = 1 
Query:  313 GKNDPRAKVVGVFNKIDCDGDGRITNWELERYLAWCFGLPFNESFELTFPGPDIGMHL-RMDSYGDLYVASKDEDSLA---CDCKSLMVGMRLLAMNGSVLTSSKSALKDAHNLLEEMATDDQLVLRLQNPQHIIRAVDKWLDLNVSD----------KVYEVEIKEGVYNTKEDFAATVQKCAR 825
            G++  RA    +F ++D D +GRIT +ELER+L     +P   +F++TF G D+ + L R+D  G L V    ED +         L  G+ LL + G  L  +K   +    +L  +A    + +    P HI+   D WLDL +S           +     +  G Y T+E FA+ VQ  AR
Sbjct:   44 GQDGMRAAAYKLFTRLDYDINGRITAYELERFLCLALEMPLQPTFDITFTGQDLHLELARVD--GRLEVQGWGEDMVGYTQSGSPQLCKGLELLKVQGITLPHTKDPTRSLAGVLRGLAPGKPVTVTFAAPPHIVSPADCWLDLRISGSGXXXXXXXXRNVAAVLPTGAYPTREAFASAVQAAAR 226
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_999.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFE7_ECTSI5.060e-1527.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC92_9STRA8.570e-1430.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_999contigC-australica_Contig_999:5035..7725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1352
Hectar predicted targeting categoryother localisation
Exons8
Cds size1176
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_999.6.1prot_C-australica_Contig_999.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_999 5209..7725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588866.6340961-UTR-C-australica_Contig_999:5034..52081682588866.6340961-UTR-C-australica_Contig_999:5034..5208Chrysoparadoxa australica CS_1217UTRC-australica_Contig_999 5035..5208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588866.6446006-CDS-C-australica_Contig_999:5208..53701682588866.6446006-CDS-C-australica_Contig_999:5208..5370Chrysoparadoxa australica CS_1217CDSC-australica_Contig_999 5209..5370 +
1682588866.6630278-CDS-C-australica_Contig_999:5446..56121682588866.6630278-CDS-C-australica_Contig_999:5446..5612Chrysoparadoxa australica CS_1217CDSC-australica_Contig_999 5447..5612 +
1682588866.6760952-CDS-C-australica_Contig_999:5785..59561682588866.6760952-CDS-C-australica_Contig_999:5785..5956Chrysoparadoxa australica CS_1217CDSC-australica_Contig_999 5786..5956 +
1682588866.6875393-CDS-C-australica_Contig_999:6131..62141682588866.6875393-CDS-C-australica_Contig_999:6131..6214Chrysoparadoxa australica CS_1217CDSC-australica_Contig_999 6132..6214 +
1682588866.6989508-CDS-C-australica_Contig_999:6491..66301682588866.6989508-CDS-C-australica_Contig_999:6491..6630Chrysoparadoxa australica CS_1217CDSC-australica_Contig_999 6492..6630 +
1682588866.709373-CDS-C-australica_Contig_999:6847..70361682588866.709373-CDS-C-australica_Contig_999:6847..7036Chrysoparadoxa australica CS_1217CDSC-australica_Contig_999 6848..7036 +
1682588866.7176645-CDS-C-australica_Contig_999:7218..73301682588866.7176645-CDS-C-australica_Contig_999:7218..7330Chrysoparadoxa australica CS_1217CDSC-australica_Contig_999 7219..7330 +
1682588866.728713-CDS-C-australica_Contig_999:7571..77251682588866.728713-CDS-C-australica_Contig_999:7571..7725Chrysoparadoxa australica CS_1217CDSC-australica_Contig_999 7572..7725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_999.6.1

>prot_C-australica_Contig_999.6.1 ID=prot_C-australica_Contig_999.6.1|Name=mRNA_C-australica_Contig_999.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=392bp
MSTTRRVQRTYTARKKRTGKHDDAEDRSEKELDKAMQDMVRKAHEEGKND
PRAKVVGVFNKIDCDGDGRITNWELERYLAWCFGLPFNESFELTFPGPDI
GMHLRMDSYGDLYVASKDEDSLACDCKSLMVGMRLLAMNGSVLTSSKSAL
KDAHNLLEEMATDDQLVLRLQNPQHIIRAVDKWLDLNVSDKVYEVEIKEG
VYNTKEDFAATVQKCARHQHKGLRTFDCTVHMDAANFTLTADGDAVSLLF
GTGTHAKANCSSHFNYNMEEGREDTLAAGKVTTPMWTKGAFAGSSQKGPQ
IDLGGLREGALGILATDLMNEFDENKSQLVDFEEFVNMHQKYFVRDSRGR
QGERLKRKLVESYMPEEKQKAFEVEVEAAERAAERKKHLLAQ
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mRNA from alignment at C-australica_Contig_999:5035..7725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_999.6.1 ID=mRNA_C-australica_Contig_999.6.1|Name=mRNA_C-australica_Contig_999.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2691bp|location=Sequence derived from alignment at C-australica_Contig_999:5035..7725+ (Chrysoparadoxa australica CS_1217)
CTCCGCTCCCTAATAGTGGCTCTCAGGGACAAACTATATGTCGCGGGCGA
GCGAAGGTTTCCAGCATCACGCTTGAGGGGAGCAGATGAAGGAAACGCAT
AGCTCGGGTTGCTAGGCCTTGATCGCAAGTGTGCGTTAGAAGCATCGCTT
AGGGAAAAGGCCCGCTTCTGAGCAATGTCAACGACGAGGAGGGTTCAACG
AACCTACACAGCAAGAAAGAAAAGGACTGGGAAACATGATGATGCCGAAG
ACAGATCCGAGAAAGAACTTGACAAGGCCATGCAAGACATGGTCAGGAAG
GCACATGAGGAGGGAAAGAACGACCCACGGGCTAAGGTGCACGCAACACC
CCACTTCGTACTCTGCTTCTGCACTTCCCCAACTCTCTCTCCCTCCTCGT
TCTTCCCTCCAGGTTGTTGGCGTGTTCAACAAGATAGATTGCGATGGAGA
TGGACGCATCACCAACTGGGAGCTTGAGCGCTACCTGGCGTGGTGCTTTG
GCTTACCGTTCAACGAGAGCTTTGAGCTGACCTTTCCGGGCCCTGACATT
GGGATGCACCTAAGGATGGACTCGTACGGTAGGCCATGCAGCGCAGGCAG
ATGTGTGTGTGCTGCCTCTCAGTGGAATCATTTGCCTCCTTGACCAGTTT
GCTAGCCGCTTGCTGCCAGCCTTGTGGCCTTATGTGACCTACCCCAGCCT
GCTGTGATCTGAGCTGGCTTTACGCGCCCAACCAATCGTGGCATCCAACA
GGAGATTTGTACGTGGCTTCCAAGGATGAGGATAGCCTTGCCTGTGACTG
TAAGAGCCTCATGGTTGGAATGAGGCTGCTGGCTATGAATGGTTCTGTCT
TGACCAGCAGCAAGTCAGCATTGAAAGATGCTCATAACCTTCTTGAGGAG
ATGGCCACTGATGACCAGCTAGGTATGCATGCCTCAGGAGACAGTCCAGT
CCTACTGCATGCTAGACATGTTAGATCCCTCATGCTGCTCTCTGTTGCTG
CTTTTTGTTGGTGACCAGTGAGCACCTTTGCTTCCCCCGTTATGAGCGTT
TTTCACTCCTGTTCTCTCATCCTCTCTCCTTCTCCTGCCATGTACAGTCT
TACGACTGCAGAATCCCCAGCACATCATAAGAGCAGTTGATAAATGGCTG
GACCTCAACGTGTCTGATAAAGTTTATGAGGTGAGGTTAGCTTAGGGGAC
ACTTGGCCAGTTCTCCATTAGCTTGCTTAGTGCGTTGAGTAAAAAGGAAG
GCTGACTCATGCCAAGATGGTGTCACCAGAGCTCAAAGCTAGCTGCATCA
ATTATGCTAGCCATTCTATACCCCAAGTTAGACCCTTCATCTTACCCACT
TGTGGTATGCCTTATATCTGCCTAAAGTGGTGAATGATTAGTGCTTATGC
TGTGGTGCTCTCTGAGAGTTCTGAGCCTTTCCTCTGCTACTGTGCCTGCC
TTAACAGGTGGAGATCAAGGAAGGAGTTTATAACACCAAGGAGGACTTTG
CTGCCACCGTGCAGAAGTGTGCACGCCATCAACACAAAGGACTGCGTACA
TTTGATTGTACCGTCCACATGGATGCTGCCAACTTCACACTTACTGGTAA
GTCACTCCACCACCTGCCCGCGCGCTATAAGACAGAGCTCGTTCAACCTG
TGCGAGCAGTATATCACCAGAACTGCCCTTTTTAAAACAGCTCACTTACA
CACAAGTCAGTCAAAGCATGCCAAGTGCTGCTGAATAAATCCAGTTCCGT
CTAGTCAGTCTTTCCCGCCGCATTCAACTCCTTCCTGAAGGCTCCTGCTC
CCCCTCATCTCAGCTGACGGCGATGCAGTGTCCCTTCTCTTTGGTACGGG
CACACACGCCAAAGCAAACTGTTCATCACACTTCAACTACAACATGGAAG
AAGGCAGGGAAGATACGCTTGCAGCGGGCAAGGTGACAACGCCCATGTGG
ACCAAAGGGGCCTTTGCAGGATCGTCCCAAAAGGGACCTCAGATAGATCT
AGGTATGCATGCAAGTGTGCCATGTTGGCAAGCTGAACCAGCGCTAGCAC
GCCAGCTCCTTGCAACCGTACAACCATACGTCAGTAGAGCATAGCGATGA
GATGAGATGGGATGAGGGAGAGGTGAAGCATTATCCCACTCAAAAGCAGC
ACGACTTATTCATTTCTGTGAGTTGGAAAACCAGGAGGGCTGAGAGAGGG
CGCTCTGGGCATCCTTGCCACTGACCTGATGAATGAGTTTGATGAAAATA
AATCACAATTGGTGGACTTTGAAGAGTTTGTCAACATGCACCAAAAGTAA
GTTGAGTTGAGTAGAGTAAAATAGAATGCAGCCAGTGAGAATGTGTTGTA
CGAGTCACGGCGTTTGTGACGAACTCAATGGTTGGACCTCGACCTGGACC
TTTTCCTGGCTGGCAGGGAATACTGGCACCTATCCCTGCAACATTCAACA
TTTTAACGTCACCATGACAGCAAGCCCCACCACATCTGCCAATGTGAACC
CACCCCGCTGCCTTACCTTACCATTGTCCATTGTTAGGTACTTTGTGAGG
GATAGCAGAGGCAGGCAAGGAGAAAGGCTAAAGAGAAAGCTGGTGGAAAG
CTACATGCCTGAAGAGAAGCAGAAGGCATTTGAGGTAGAAGTAGAGGCAG
CAGAGCGAGCAGCAGAGAGGAAGAAGCATCTGCTAGCGCAA
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Coding sequence (CDS) from alignment at C-australica_Contig_999:5035..7725+

>mRNA_C-australica_Contig_999.6.1 ID=mRNA_C-australica_Contig_999.6.1|Name=mRNA_C-australica_Contig_999.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1176bp|location=Sequence derived from alignment at C-australica_Contig_999:5035..7725+ (Chrysoparadoxa australica CS_1217)
ATGTCAACGACGAGGAGGGTTCAACGAACCTACACAGCAAGAAAGAAAAG
GACTGGGAAACATGATGATGCCGAAGACAGATCCGAGAAAGAACTTGACA
AGGCCATGCAAGACATGGTCAGGAAGGCACATGAGGAGGGAAAGAACGAC
CCACGGGCTAAGGTTGTTGGCGTGTTCAACAAGATAGATTGCGATGGAGA
TGGACGCATCACCAACTGGGAGCTTGAGCGCTACCTGGCGTGGTGCTTTG
GCTTACCGTTCAACGAGAGCTTTGAGCTGACCTTTCCGGGCCCTGACATT
GGGATGCACCTAAGGATGGACTCGTACGGAGATTTGTACGTGGCTTCCAA
GGATGAGGATAGCCTTGCCTGTGACTGTAAGAGCCTCATGGTTGGAATGA
GGCTGCTGGCTATGAATGGTTCTGTCTTGACCAGCAGCAAGTCAGCATTG
AAAGATGCTCATAACCTTCTTGAGGAGATGGCCACTGATGACCAGCTAGT
CTTACGACTGCAGAATCCCCAGCACATCATAAGAGCAGTTGATAAATGGC
TGGACCTCAACGTGTCTGATAAAGTTTATGAGGTGGAGATCAAGGAAGGA
GTTTATAACACCAAGGAGGACTTTGCTGCCACCGTGCAGAAGTGTGCACG
CCATCAACACAAAGGACTGCGTACATTTGATTGTACCGTCCACATGGATG
CTGCCAACTTCACACTTACTGCTGACGGCGATGCAGTGTCCCTTCTCTTT
GGTACGGGCACACACGCCAAAGCAAACTGTTCATCACACTTCAACTACAA
CATGGAAGAAGGCAGGGAAGATACGCTTGCAGCGGGCAAGGTGACAACGC
CCATGTGGACCAAAGGGGCCTTTGCAGGATCGTCCCAAAAGGGACCTCAG
ATAGATCTAGGAGGGCTGAGAGAGGGCGCTCTGGGCATCCTTGCCACTGA
CCTGATGAATGAGTTTGATGAAAATAAATCACAATTGGTGGACTTTGAAG
AGTTTGTCAACATGCACCAAAAGTACTTTGTGAGGGATAGCAGAGGCAGG
CAAGGAGAAAGGCTAAAGAGAAAGCTGGTGGAAAGCTACATGCCTGAAGA
GAAGCAGAAGGCATTTGAGGTAGAAGTAGAGGCAGCAGAGCGAGCAGCAG
AGAGGAAGAAGCATCTGCTAGCGCAA
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