Homology
BLAST of mRNA_C-australica_Contig_999.6.1 vs. uniprot
Match:
D8LFE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE7_ECTSI)
HSP 1 Score: 88.6 bits (218), Expect = 5.060e-15
Identity = 72/260 (27.69%), Postives = 119/260 (45.77%), Query Frame = 1
Query: 328 RAKVVGVFNKIDCDGDGRITNWELERYLAWCFGLPFNESFELTFPGPDIGMHLRMDSYGDLYVASKDEDSLACDCKSLMVGMRLLAMNG----SVLTSS-------------KSALKDAHNLLEEMATDDQL-------VLRLQNPQHIIRAVDKWLDLNVSDKVYEVEIKEGVYNTKEDFAATVQKCARHQHKG-LRTFDCTVHMDAAN-FTLTADGDA-VSLLFGTGTHAKANCSSHFNYNMEEGREDTLAAGKVTTP 1026
R + +F +D RI WEL R+ G + E+ F +G+ + D G + VA +EDS A + SLM+GMR+L+++G LT++ KS+L+ ++LE ++ D VL + P ++ + WLD++VS V + GVYNT + +Q+ R QH LR F V D A F + + G A +L+ +G H+ +C + + E+ + AG+ P
Sbjct: 98 RQRAYSLFEHLDVTCSHRIYAWELARFFPPAIGCTTDNVVEIAFTCNTLGLTVEEDEEGMVVVAGWEEDSAAAEHPSLMIGMRILSIDGWDLPCALTAAASRHGAPGRDGTFKSSLRKCESVLEALSEGDMEDGENALHVLEVAMPAIVVTKSNTWLDMDVSGVAVAVSVPLGVYNTIGAYFTALQEAGRDQHPTELRHFG--VKFDPAQPFVMLSAGYAPFRILWRSGEHSTQSCRKLLHCSAEQ-----MVAGRFGNP 350
BLAST of mRNA_C-australica_Contig_999.6.1 vs. uniprot
Match:
A0A835ZC92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC92_9STRA)
HSP 1 Score: 85.1 bits (209), Expect = 8.570e-14
Identity = 57/185 (30.81%), Postives = 87/185 (47.03%), Query Frame = 1
Query: 313 GKNDPRAKVVGVFNKIDCDGDGRITNWELERYLAWCFGLPFNESFELTFPGPDIGMHL-RMDSYGDLYVASKDEDSLA---CDCKSLMVGMRLLAMNGSVLTSSKSALKDAHNLLEEMATDDQLVLRLQNPQHIIRAVDKWLDLNVSD----------KVYEVEIKEGVYNTKEDFAATVQKCAR 825
G++ RA +F ++D D +GRIT +ELER+L +P +F++TF G D+ + L R+D G L V ED + L G+ LL + G L +K + +L +A + + P HI+ D WLDL +S + + G Y T+E FA+ VQ AR
Sbjct: 44 GQDGMRAAAYKLFTRLDYDINGRITAYELERFLCLALEMPLQPTFDITFTGQDLHLELARVD--GRLEVQGWGEDMVGYTQSGSPQLCKGLELLKVQGITLPHTKDPTRSLAGVLRGLAPGKPVTVTFAAPPHIVSPADCWLDLRISGSGXXXXXXXXRNVAAVLPTGAYPTREAFASAVQAAAR 226
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_999.6.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 5.06e-15 / Id = 27.69 Expect = 8.57e-14 / Id = 30.81 Sequence D8LFE7_ECTSI A0A835ZC92_9STRA
Match Name E-value Identity Description
D8LFE7_ECTSI 5.060e-15 27.69 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A835ZC92_9STRA 8.570e-14 30.81 Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 1 Model size 1352 Hectar predicted targeting category other localisation Exons 8 Cds size 1176
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588866.6340961-UTR-C-australica_Contig_999:5034..5208 1682588866.6340961-UTR-C-australica_Contig_999:5034..5208 Chrysoparadoxa australica CS_1217 UTR C-australica_Contig_999 5035..5208 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588866.6446006-CDS-C-australica_Contig_999:5208..5370 1682588866.6446006-CDS-C-australica_Contig_999:5208..5370 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_999 5209..5370 + 1682588866.6630278-CDS-C-australica_Contig_999:5446..5612 1682588866.6630278-CDS-C-australica_Contig_999:5446..5612 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_999 5447..5612 + 1682588866.6760952-CDS-C-australica_Contig_999:5785..5956 1682588866.6760952-CDS-C-australica_Contig_999:5785..5956 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_999 5786..5956 + 1682588866.6875393-CDS-C-australica_Contig_999:6131..6214 1682588866.6875393-CDS-C-australica_Contig_999:6131..6214 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_999 6132..6214 + 1682588866.6989508-CDS-C-australica_Contig_999:6491..6630 1682588866.6989508-CDS-C-australica_Contig_999:6491..6630 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_999 6492..6630 + 1682588866.709373-CDS-C-australica_Contig_999:6847..7036 1682588866.709373-CDS-C-australica_Contig_999:6847..7036 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_999 6848..7036 + 1682588866.7176645-CDS-C-australica_Contig_999:7218..7330 1682588866.7176645-CDS-C-australica_Contig_999:7218..7330 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_999 7219..7330 + 1682588866.728713-CDS-C-australica_Contig_999:7571..7725 1682588866.728713-CDS-C-australica_Contig_999:7571..7725 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_999 7572..7725 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_999.6.1
>prot_C-australica_Contig_999.6.1 ID=prot_C-australica_Contig_999.6.1|Name=mRNA_C-australica_Contig_999.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=392bp
MSTTRRVQRTYTARKKRTGKHDDAEDRSEKELDKAMQDMVRKAHEEGKND back to top mRNA from alignment at C-australica_Contig_999:5035..7725+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_999.6.1 ID=mRNA_C-australica_Contig_999.6.1|Name=mRNA_C-australica_Contig_999.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2691bp|location=Sequence derived from alignment at C-australica_Contig_999:5035..7725+ (Chrysoparadoxa australica CS_1217)CTCCGCTCCCTAATAGTGGCTCTCAGGGACAAACTATATGTCGCGGGCGA
GCGAAGGTTTCCAGCATCACGCTTGAGGGGAGCAGATGAAGGAAACGCAT
AGCTCGGGTTGCTAGGCCTTGATCGCAAGTGTGCGTTAGAAGCATCGCTT
AGGGAAAAGGCCCGCTTCTGAGCA ATGTCAACGACGAGGAGGGTTCAACG
AACCTACACAGCAAGAAAGAAAAGGACTGGGAAACATGATGATGCCGAAG
ACAGATCCGAGAAAGAACTTGACAAGGCCATGCAAGACATGGTCAGGAAG
GCACATGAGGAGGGAAAGAACGACCCACGGGCTAAG GTGCACGCAACACC
CCACTTCGTACTCTGCTTCTGCACTTCCCCAACTCTCTCTCCCTCCTCGT
TCTTCCCTCCAGGTTGTTGGCGTGTTCAACAAGATAGATTGCGATGGAGA
TGGACGCATCACCAACTGGGAGCTTGAGCGCTACCTGGCGTGGTGCTTTG
GCTTACCGTTCAACGAGAGCTTTGAGCTGACCTTTCCGGGCCCTGACATT
GGGATGCACCTAAGGATGGACTCGTACG GTAGGCCATGCAGCGCAGGCAG
ATGTGTGTGTGCTGCCTCTCAGTGGAATCATTTGCCTCCTTGACCAGTTT
GCTAGCCGCTTGCTGCCAGCCTTGTGGCCTTATGTGACCTACCCCAGCCT
GCTGTGATCTGAGCTGGCTTTACGCGCCCAACCAATCGTGGCATCCAACA
GGAGATTTGTACGTGGCTTCCAAGGATGAGGATAGCCTTGCCTGTGACTG
TAAGAGCCTCATGGTTGGAATGAGGCTGCTGGCTATGAATGGTTCTGTCT
TGACCAGCAGCAAGTCAGCATTGAAAGATGCTCATAACCTTCTTGAGGAG
ATGGCCACTGATGACCAGCTAG GTATGCATGCCTCAGGAGACAGTCCAGT
CCTACTGCATGCTAGACATGTTAGATCCCTCATGCTGCTCTCTGTTGCTG
CTTTTTGTTGGTGACCAGTGAGCACCTTTGCTTCCCCCGTTATGAGCGTT
TTTCACTCCTGTTCTCTCATCCTCTCTCCTTCTCCTGCCATGTACAGTCT
TACGACTGCAGAATCCCCAGCACATCATAAGAGCAGTTGATAAATGGCTG
GACCTCAACGTGTCTGATAAAGTTTATGAG GTGAGGTTAGCTTAGGGGAC
ACTTGGCCAGTTCTCCATTAGCTTGCTTAGTGCGTTGAGTAAAAAGGAAG
GCTGACTCATGCCAAGATGGTGTCACCAGAGCTCAAAGCTAGCTGCATCA
ATTATGCTAGCCATTCTATACCCCAAGTTAGACCCTTCATCTTACCCACT
TGTGGTATGCCTTATATCTGCCTAAAGTGGTGAATGATTAGTGCTTATGC
TGTGGTGCTCTCTGAGAGTTCTGAGCCTTTCCTCTGCTACTGTGCCTGCC
TTAACAGGTGGAGATCAAGGAAGGAGTTTATAACACCAAGGAGGACTTTG
CTGCCACCGTGCAGAAGTGTGCACGCCATCAACACAAAGGACTGCGTACA
TTTGATTGTACCGTCCACATGGATGCTGCCAACTTCACACTTACTG GTAA
GTCACTCCACCACCTGCCCGCGCGCTATAAGACAGAGCTCGTTCAACCTG
TGCGAGCAGTATATCACCAGAACTGCCCTTTTTAAAACAGCTCACTTACA
CACAAGTCAGTCAAAGCATGCCAAGTGCTGCTGAATAAATCCAGTTCCGT
CTAGTCAGTCTTTCCCGCCGCATTCAACTCCTTCCTGAAGGCTCCTGCTC
CCCCTCATCTCAGCTGACGGCGATGCAGTGTCCCTTCTCTTTGGTACGGG
CACACACGCCAAAGCAAACTGTTCATCACACTTCAACTACAACATGGAAG
AAGGCAGGGAAGATACGCTTGCAGCGGGCAAGGTGACAACGCCCATGTGG
ACCAAAGGGGCCTTTGCAGGATCGTCCCAAAAGGGACCTCAGATAGATCT
AG GTATGCATGCAAGTGTGCCATGTTGGCAAGCTGAACCAGCGCTAGCAC
GCCAGCTCCTTGCAACCGTACAACCATACGTCAGTAGAGCATAGCGATGA
GATGAGATGGGATGAGGGAGAGGTGAAGCATTATCCCACTCAAAAGCAGC
ACGACTTATTCATTTCTGTGAGTTGGAAAACCAGGAGGGCTGAGAGAGGG
CGCTCTGGGCATCCTTGCCACTGACCTGATGAATGAGTTTGATGAAAATA
AATCACAATTGGTGGACTTTGAAGAGTTTGTCAACATGCACCAAAA GTAA
GTTGAGTTGAGTAGAGTAAAATAGAATGCAGCCAGTGAGAATGTGTTGTA
CGAGTCACGGCGTTTGTGACGAACTCAATGGTTGGACCTCGACCTGGACC
TTTTCCTGGCTGGCAGGGAATACTGGCACCTATCCCTGCAACATTCAACA
TTTTAACGTCACCATGACAGCAAGCCCCACCACATCTGCCAATGTGAACC
CACCCCGCTGCCTTACCTTACCATTGTCCATTGTTAGGTACTTTGTGAGG
GATAGCAGAGGCAGGCAAGGAGAAAGGCTAAAGAGAAAGCTGGTGGAAAG
CTACATGCCTGAAGAGAAGCAGAAGGCATTTGAGGTAGAAGTAGAGGCAG
CAGAGCGAGCAGCAGAGAGGAAGAAGCATCTGCTAGCGCAA back to top Coding sequence (CDS) from alignment at C-australica_Contig_999:5035..7725+
>mRNA_C-australica_Contig_999.6.1 ID=mRNA_C-australica_Contig_999.6.1|Name=mRNA_C-australica_Contig_999.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1176bp|location=Sequence derived from alignment at C-australica_Contig_999:5035..7725+ (Chrysoparadoxa australica CS_1217) back to top