mRNA_C-australica_Contig_999.3.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: A0A6A5BTV8_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BTV8_NAEFO) HSP 1 Score: 65.5 bits (158), Expect = 9.980e-9 Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 3 Query: 174 KFLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQ 335
++ QCYQC+ ++V Q TK +W C +CGS+QSI KIF +S+ KD+RP+VQQ
Sbjct: 4 EYAVFQCYQCSAFSVNQITKNRKWKCKLCGSQQSIRKIFATSHQPKDLRPIVQQ 57
BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: A0A1Y1I702_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I702_KLENI) HSP 1 Score: 65.1 bits (157), Expect = 1.980e-8 Identity = 25/55 (45.45%), Postives = 41/55 (74.55%), Query Frame = 3 Query: 174 KFLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQL 338
+++ V+C+QC+ + V+Q TK N+WSC +C +KQS++K++G S A D+R L Q L
Sbjct: 3 EYIVVRCFQCSTFQVKQVTKSNKWSCSLCAAKQSVIKVYGVSGKASDLRKLAQDL 57
BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: UPI001CFCE7EF (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFCE7EF) HSP 1 Score: 63.2 bits (152), Expect = 5.080e-8 Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 3 Query: 174 KFLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQ 335
++ QCYQC+ ++V Q TK +W C +CGS+QSI K++ +S+ KD+RP+VQQ
Sbjct: 4 EYAVFQCYQCSAFSVNQITKNRKWKCKLCGSQQSIRKMYATSHQPKDLRPIVQQ 57
BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: D2VMC5_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VMC5_NAEGR) HSP 1 Score: 62.4 bits (150), Expect = 8.980e-8 Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 3 Query: 189 QCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQL 338
QC+ C +++ Q TK +W C +CGS+QSI K+F +SN KD+RP+VQ+L
Sbjct: 8 QCFNCTAFSINQVTKNRKWKCKLCGSQQSIRKVFANSNQPKDLRPIVQEL 57
BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: A0A1Y2C0C8_9FUNG (SP-RING-type domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C0C8_9FUNG) HSP 1 Score: 61.6 bits (148), Expect = 1.210e-7 Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 3 Query: 177 FLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQL 338
F V+C+QC+ + VQQ+ K N+W C +CGSKQS+ K++ S+ A D R VQ+L
Sbjct: 4 FQVVRCFQCSAFVVQQEKKSNKWQCTLCGSKQSVTKVYFESHVAGDTRAAVQEL 57
BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: D8LE90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE90_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 4.670e-7 Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 3 Query: 177 FLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQLAAGSAG 356
FLA++C+ C + V Q+TK +W C MCG QSIVK++G AKD+R LV L A + G
Sbjct: 8 FLALRCFSCQCFQVNQRTKSGKWKCRMCGEGQSIVKVWGRGGHAKDVRGLVMALNAAAGG 67
BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Match: UPI000644E7BC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E7BC) HSP 1 Score: 57.8 bits (138), Expect = 7.480e-6 Identity = 24/54 (44.44%), Postives = 41/54 (75.93%), Query Frame = 3 Query: 174 KFLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNSAKDIRPLVQQ 335
+++ +QCY C+ + V+Q+TK N ++C +C KQSI++I+G S AKD+R LV++
Sbjct: 4 EYILIQCYSCSMFQVKQKTKVNSFTCVICHEKQSIMRIYGISYQAKDLRDLVKK 57 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_999.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_999.3.1 >prot_C-australica_Contig_999.3.1 ID=prot_C-australica_Contig_999.3.1|Name=mRNA_C-australica_Contig_999.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=223bp MWQMSQGKFLAVQCYQCNQYAVQQQTKGNQWSCCMCGSKQSIVKIFGSSNback to top mRNA from alignment at C-australica_Contig_999:1894..2842+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_999.3.1 ID=mRNA_C-australica_Contig_999.3.1|Name=mRNA_C-australica_Contig_999.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=949bp|location=Sequence derived from alignment at C-australica_Contig_999:1894..2842+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_999:1894..2842+ >mRNA_C-australica_Contig_999.3.1 ID=mRNA_C-australica_Contig_999.3.1|Name=mRNA_C-australica_Contig_999.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=669bp|location=Sequence derived from alignment at C-australica_Contig_999:1894..2842+ (Chrysoparadoxa australica CS_1217)back to top |