mRNA_C-australica_Contig_996.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_996.5.1
Unique NamemRNA_C-australica_Contig_996.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Match: A0A0C2M242_9CYAN (Ankyrin n=2 Tax=Scytonemataceae TaxID=1182 RepID=A0A0C2M242_9CYAN)

HSP 1 Score: 63.9 bits (154), Expect = 1.240e-7
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 2 
Query:  458 MMREAAECGDVERLSELIKVGLPINAPDGIGFTPLLYACGSGRVEAARLLLDSGSDCNYGAGT--VTGLGLASKRGALDVVKLMLQRGARVAATDETGKT 751
            ++  A + GD++++  L+  G  ++  D  G TPL++A   G  E AR LLD+G+D +       +T L LA+    LD+VKL++ +GA V AT+E G T
Sbjct:    8 LLLSAVKNGDIKQVQALLNDGANVDTGDRDGTTPLMFAAHFGYTEIARSLLDAGADLDLKRKRYKLTALMLAASANQLDIVKLLVSKGADVNATNEDGST 107
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BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Match: A0A856M954_9CYAN (Ankyrin repeat domain-containing protein n=3 Tax=Brasilonema TaxID=383614 RepID=A0A856M954_9CYAN)

HSP 1 Score: 62.4 bits (150), Expect = 3.940e-7
Identity = 36/100 (36.00%), Postives = 58/100 (58.00%), Query Frame = 2 
Query:  458 MMREAAECGDVERLSELIKVGLPINAPDGIGFTPLLYACGSGRVEAARLLLDSGSDCNYGAGT--VTGLGLASKRGALDVVKLMLQRGARVAATDETGKT 751
            ++  A + GD++++  L+  G  ++  D  G TPL++A   G  E  R LLD+G+D +       +T L LA+    LD+VKL++ +GA V AT+E G T
Sbjct:    8 LLLSAVKNGDIKQVQALLNDGANVDTGDRDGTTPLMFAAHFGYTEIGRSLLDAGADFDLKRKRYRLTALMLAASANQLDIVKLLISKGADVNATNEDGST 107
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BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Match: UPI00145CE4EE (ankyrin repeat domain-containing protein n=1 Tax=Brasilonema sp. UFV-L1 TaxID=2234130 RepID=UPI00145CE4EE)

HSP 1 Score: 61.6 bits (148), Expect = 7.010e-7
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  458 MMREAAECGDVERLSELIKVGLPINAPDGIGFTPLLYACGSGRVEAARLLLDSGSDCN-----YGAGTVTGLGLASKRGALDVVKLMLQRGARVAATDETG 745
            ++  A + GD++++  ++  G  ++  D  G TPL++A   G  E AR LLD+G+  N     YG   +T L LA+    LD+VKL++ RGA V AT+E G
Sbjct:    8 LLLSAVKNGDLKQVQAVLNDGATVDTGDRDGTTPLMFAAHFGYTEIARSLLDAGATLNLKRKRYG---LTALMLAASAKQLDIVKLLVSRGADVNATNEDG 105
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BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Match: R7V436_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V436_CAPTE)

HSP 1 Score: 56.2 bits (134), Expect = 2.300e-6
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 2 
Query:  470 AAECGDVERLSELIKVGLPINAPDGIGFTPLLYACGSGRVEAARLLL--DSGSDCNY--GAGTVTG---LGLASKRGALDVVKLMLQRGARVAATDETGKTALH 760
            A E G  + +SELI +G  +N     G+TPL +A  +      +LLL   +GS  N   G G  TG   L LAS  G  + ++++L  GA V ATD  G TALH
Sbjct:   11 ACEAGHEKTVSELISLGADVNVRKSNGWTPLHWAAQNDFPVIVKLLLLLSAGSKVNATKGQGVTTGITSLHLASALGHAETLRILLNAGADVEATDHFGFTALH 114
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BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Match: UPI000552EF3F (ankyrin repeat domain-containing protein n=1 Tax=Cohnella thermotolerans TaxID=329858 RepID=UPI000552EF3F)

HSP 1 Score: 57.0 bits (136), Expect = 3.630e-6
Identity = 43/106 (40.57%), Postives = 55/106 (51.89%), Query Frame = 2 
Query:  467 EAAECGDVERLSELIKV--GLPINAPDGIGFTPLLYACGSGRVEAARLLLDSGSDCN---------YGAGTVTGLGLASKRGALDVVKLMLQRGARVAATDETGKT 751
            +AA+ GD ERL  L+K   GL  NA +  G T L YA   G  +A   LLDSG+D N           + T     LA +R A DV++L+L+RGAR    D  G T
Sbjct:    9 QAAQAGDAERLKALLKADPGLA-NAENSDGLTLLGYAAHFGHRDAVLALLDSGADVNAISHSKIAYIPSNTALHAALAGERNA-DVIRLLLERGARTDLLDSNGHT 112
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BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Match: UPI001478F2D4 (transient receptor potential channel pyrexia-like isoform X1 n=2 Tax=Osmia TaxID=124287 RepID=UPI001478F2D4)

HSP 1 Score: 59.7 bits (143), Expect = 4.390e-6
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  470 AAECGDVERLSELIKVGLPINAPDGIG-FTPLLYACGSGRVEAARLLLDSG---SDCNYGAGTVTGLGLASKRGALDVVKLMLQRGARVAATDETGKTALH 760
            A+  G+V  +  LI+ G+ IN  + I  +TPL +A     V+AAR+LLD+G   S C Y       L  A +  A+++V+L+L+RGA V   + TG+T LH
Sbjct:  275 ASLSGNVACIEHLIEKGVDINCRNPINHYTPLHFAVLGNSVDAARVLLDNGAKPSTCLYQEMVEPVLHCAIRAAAVEIVELLLERGASVVEKNHTGETPLH 375
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BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Match: A0A2K0T609_9HYPO (Uncharacterized protein n=1 Tax=Trichoderma gamsii TaxID=398673 RepID=A0A2K0T609_9HYPO)

HSP 1 Score: 58.2 bits (139), Expect = 1.440e-5
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 2 
Query:  470 AAECGDVERLSELIKVGLPINA--PDGIGFTPLLYACGSGRVEAARLLLDSGSDCNYGAGTVTGLGLASKRGALDVVKLMLQRGARVAATDETGKTA 754
            AA   D +++ +L+     ++A  PDG G TPL+ AC +G V   R LL+ G + N  A   T L  A  +   +VVKL++ RGA+ +  +  G TA
Sbjct: 1098 AASAKDHKKIVQLLIEEHKVDAEIPDGNGITPLIAACQAGHVRTTRYLLEKGVNVNRAAKDTTPLQAARSKDHEEVVKLLVDRGAKESVVEPNGVTA 1194
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BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Match: R7V911_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V911_CAPTE)

HSP 1 Score: 55.1 bits (131), Expect = 1.920e-5
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 2 
Query:  470 AAECGDVERLSELIKVGLPINAPDGIGFTPLLYACGSGRVEAARLLLDSGSDCNYGA--GTVTGLGLASKRGALDVVKLMLQRGARVAATDETGKTALH 760
            AA   + +RL +L+K   P N+ D  G++ L YA  +G + A  +LL  G+  N     G  T L  A+  G ++VVKL+L +GA     D  G+TALH
Sbjct:   32 AALSNETDRLQDLLKHTDP-NSLDSSGYSALHYAARNGHLNACVMLLKHGAKVNIKTRTGKATPLMRAAYCGHVEVVKLLLSKGANPLTQDSDGRTALH 129
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BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Match: UPI0014432715 (uncharacterized protein LOC117229631 n=1 Tax=Megalopta genalis TaxID=115081 RepID=UPI0014432715)

HSP 1 Score: 57.8 bits (138), Expect = 2.080e-5
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 2 
Query:  470 AAECGDVERLSELIKVGLPINAPDGIGF-TPLLYACGSGRVEAARLLLDSGSD---CNYGAGTVTGLGLASKRGALDVVKLMLQRGARVAATDETGKTALH 760
            A+  G+V  +  LIK G  +N  + I + TPL +A      +AAR+LLD+G+    C Y       L  A + GA+++VKL+L RGA V   +  G+T LH
Sbjct: 1546 ASLSGNVTCIEHLIKQGADVNCRNPINYYTPLHFAIHRNSADAARVLLDNGAKPTTCLYQEIVEPVLHSAIRAGAVEIVKLLLDRGASVVEKNHMGETPLH 1646
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BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Match: UPI0013040C25 (uncharacterized protein LOC116427990 n=1 Tax=Nomia melanderi TaxID=2448451 RepID=UPI0013040C25)

HSP 1 Score: 56.6 bits (135), Expect = 4.800e-5
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 2 
Query:  470 AAECGDVERLSELIKVGLPINAPDGIG-FTPLLYACGSGRVEAARLLLDSGSDCN---YGAGTVTGLGLASKRGALDVVKLMLQRGARVAATDETGKTALH 760
            A+  G+V  +  LIK+G  +N  + I  +TPL +A     V+AAR+LLD+G+      Y       L  A +  A+++VKL+L+RGA +   +  G+TALH
Sbjct: 1262 ASLSGNVACVEHLIKIGADVNCRNPINHYTPLHFAIYRNSVDAARVLLDNGAKPTTYLYQEIVEPVLHSAIRSDAVEIVKLLLERGASIVEKNHMGETALH 1362
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_996.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A0C2M242_9CYAN1.240e-737.00Ankyrin n=2 Tax=Scytonemataceae TaxID=1182 RepID=A... [more]
A0A856M954_9CYAN3.940e-736.00Ankyrin repeat domain-containing protein n=3 Tax=B... [more]
UPI00145CE4EE7.010e-737.62ankyrin repeat domain-containing protein n=1 Tax=B... [more]
R7V436_CAPTE2.300e-639.42Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
UPI000552EF3F3.630e-640.57ankyrin repeat domain-containing protein n=1 Tax=C... [more]
UPI001478F2D44.390e-638.61transient receptor potential channel pyrexia-like ... [more]
A0A2K0T609_9HYPO1.440e-536.08Uncharacterized protein n=1 Tax=Trichoderma gamsii... [more]
R7V911_CAPTE1.920e-537.37Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
UPI00144327152.080e-537.62uncharacterized protein LOC117229631 n=1 Tax=Megal... [more]
UPI0013040C254.800e-536.63uncharacterized protein LOC116427990 n=1 Tax=Nomia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_996contigC-australica_Contig_996:11562..13243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G731
PFAMsAnk_2
Model size1029
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue1.97e-21
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size795
COG categoryI
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_996.5.1prot_C-australica_Contig_996.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_996 11576..12857 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588864.1294858-UTR-C-australica_Contig_996:11561..115751682588864.1294858-UTR-C-australica_Contig_996:11561..11575Chrysoparadoxa australica CS_1217UTRC-australica_Contig_996 11562..11575 -
1682588864.1997914-UTR-C-australica_Contig_996:12857..128791682588864.1997914-UTR-C-australica_Contig_996:12857..12879Chrysoparadoxa australica CS_1217UTRC-australica_Contig_996 12858..12879 -
1682588864.2108672-UTR-C-australica_Contig_996:12977..131051682588864.2108672-UTR-C-australica_Contig_996:12977..13105Chrysoparadoxa australica CS_1217UTRC-australica_Contig_996 12978..13105 -
1682588864.2212107-UTR-C-australica_Contig_996:13173..132431682588864.2212107-UTR-C-australica_Contig_996:13173..13243Chrysoparadoxa australica CS_1217UTRC-australica_Contig_996 13174..13243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588864.1403403-CDS-C-australica_Contig_996:11575..117641682588864.1403403-CDS-C-australica_Contig_996:11575..11764Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 11576..11764 -
1682588864.1494656-CDS-C-australica_Contig_996:11857..121691682588864.1494656-CDS-C-australica_Contig_996:11857..12169Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 11858..12169 -
1682588864.159148-CDS-C-australica_Contig_996:12292..123791682588864.159148-CDS-C-australica_Contig_996:12292..12379Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 12293..12379 -
1682588864.1704378-CDS-C-australica_Contig_996:12472..125211682588864.1704378-CDS-C-australica_Contig_996:12472..12521Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 12473..12521 -
1682588864.1831443-CDS-C-australica_Contig_996:12635..127601682588864.1831443-CDS-C-australica_Contig_996:12635..12760Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 12636..12760 -
1682588864.1911125-CDS-C-australica_Contig_996:12824..128571682588864.1911125-CDS-C-australica_Contig_996:12824..12857Chrysoparadoxa australica CS_1217CDSC-australica_Contig_996 12825..12857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_996.5.1

>prot_C-australica_Contig_996.5.1 ID=prot_C-australica_Contig_996.5.1|Name=mRNA_C-australica_Contig_996.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=265bp
MEQAATLAKLKVQCEQTGNELADAEAMLRERHTDTTLGSSTAKMRALHRL
ELRLETLRRRQESQVGRLKVLEEVAQVKEMMREAAECGDVERLSELIKVG
LPINAPDGIGFTPLLYACGSGRVEAARLLLDSGSDCNYGAGTVTGLGLAS
KRGALDVVKLMLQRGARVAATDETGKTALHLACMGGHAEIAQELLDAKAG
IHASDNKGDTPLHIACSHKLTSLARLLVDWGATITHRNGAGYTPIDVALM
VKSAELVSILRGDK*
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mRNA from alignment at C-australica_Contig_996:11562..13243-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_996.5.1 ID=mRNA_C-australica_Contig_996.5.1|Name=mRNA_C-australica_Contig_996.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1682bp|location=Sequence derived from alignment at C-australica_Contig_996:11562..13243- (Chrysoparadoxa australica CS_1217)
GGAGGAGGGGGAGGATCTCCCGCAAGCCAGCCTCGATGATCCCTATGAGA
AGGTGCAGAAAGAGCTCGAGGTAAGGCTCTTTCATCGAAGCATGCGGCCC
CCCAGGCCAGTACGTAATGGGTGTCCCTTTGCTGCCAGGTGTGCAAGCGC
AAGCTAGAGAATGCCCAGTACTTGACAGAGCACAGCACAAAGATTGCCGA
TGACGCTCTTAGAAGAGAGGCTGAAGCGCAGGAGGCGTTGCAAGAAAGCA
ACCGCTTGCTCAAGAGGTAGGCAGTGCGTGGGGATTGAAGGCCGGCCTGC
CCGCACCATCGTCATCAGCTAGGCTGAACTGCCACCCACCCATTTGCCTT
GCACCTTGCCACAGGTCTCTAGAGAAGATAGAGGCCATGGAGCAAGCTGC
CACACTGGCCAAGCTCAAGGTACAAGAATGCCCATGATCCTTTCTGCCCT
TTAGCCTTAGCTCCTACTTCTCTTCCTTGGCAGGTGCAGTGTGAACAGAC
TGGCAATGAGCTCGCGGATGCTGAAGCCATGCTGCGCGAGAGGCACACAG
ACACCACGCTGGGCTCATCCACTGCAAAGATGAGGGCCCTGCACCGATTA
GAGTTGAGGTAGGTGGCAAGCAGGCAGCGCAAGCAGGCAGAGCAAGCAGG
CAGAGCATTGCATCTCATTGCATATCATCTCATCTCATGCTATGCCTTCG
TTTGGGGCTCACTTTCTCTCAGGTTGGAGACACTGCGGCGACGTCAAGAG
AGTCAGGTTGGGCGTCTCAAGGTAAGCTTTTGCCTCTCGTTAAGCACCAG
CCAGGCGTGACCAGTGCTGACCCCTTGACCTCGGCTACTGGCCCTCATTG
TTAATCGTTGTTAGGTGTTGGAGGAGGTTGCACAGGTGAAGGAGATGATG
AGGGAAGCTGCAGAATGCGGCGATGTAGAACGGCTGAGTGAGCTCATCAA
GGTGCTTAGAACAATCATCTGATCAAGTCATTGCGTGCTAACATGCCATC
CCGATAGGTCAAACACACATGTGTGTGTGGGGAGTTGGCCGTTGACCAGC
CAGGCTAACATATATAATCCACAGGTGGGGCTGCCAATAAATGCTCCAGA
TGGCATAGGCTTCACCCCGCTGCTTTACGCATGTGGAAGTGGCAGGGTGG
AGGCTGCCAGGCTCCTGCTTGACAGCGGCAGCGACTGCAACTACGGTGCG
GGGACGGTGACGGGGCTTGGGCTGGCTTCCAAGCGAGGGGCTTTGGACGT
GGTGAAGCTCATGCTACAGAGGGGTGCAAGGGTTGCTGCAACGGATGAGA
CGGGGAAGACTGCCCTGCATCTCGCGTGCATGGGGGGCCACGCGGAAATC
GCTCAGGAGCTTCTAGATGCTAAGGCAGGCATTCATGTAAGCAAGCAACA
GCACATGAAAAAATGGTTGGCACCTTCTCTCTCTCCGTCCTTTCCTTGAG
GTCTGATCTCAACTCACCTCACTCAACAGGCATCTGACAACAAGGGAGAT
ACGCCGCTGCACATTGCGTGCTCTCACAAACTTACGTCCCTGGCCCGGCT
GCTGGTTGACTGGGGTGCCACTATCACACATCGAAATGGAGCAGGCTACA
CCCCTATTGATGTGGCTCTCATGGTCAAGAGCGCTGAGCTTGTCAGCATC
TTGAGGGGTGATAAATGAAATATAAAATTAAG
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Coding sequence (CDS) from alignment at C-australica_Contig_996:11562..13243-

>mRNA_C-australica_Contig_996.5.1 ID=mRNA_C-australica_Contig_996.5.1|Name=mRNA_C-australica_Contig_996.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=795bp|location=Sequence derived from alignment at C-australica_Contig_996:11562..13243- (Chrysoparadoxa australica CS_1217)
ATGGAGCAAGCTGCCACACTGGCCAAGCTCAAGGTGCAGTGTGAACAGAC
TGGCAATGAGCTCGCGGATGCTGAAGCCATGCTGCGCGAGAGGCACACAG
ACACCACGCTGGGCTCATCCACTGCAAAGATGAGGGCCCTGCACCGATTA
GAGTTGAGGTTGGAGACACTGCGGCGACGTCAAGAGAGTCAGGTTGGGCG
TCTCAAGGTGTTGGAGGAGGTTGCACAGGTGAAGGAGATGATGAGGGAAG
CTGCAGAATGCGGCGATGTAGAACGGCTGAGTGAGCTCATCAAGGTGGGG
CTGCCAATAAATGCTCCAGATGGCATAGGCTTCACCCCGCTGCTTTACGC
ATGTGGAAGTGGCAGGGTGGAGGCTGCCAGGCTCCTGCTTGACAGCGGCA
GCGACTGCAACTACGGTGCGGGGACGGTGACGGGGCTTGGGCTGGCTTCC
AAGCGAGGGGCTTTGGACGTGGTGAAGCTCATGCTACAGAGGGGTGCAAG
GGTTGCTGCAACGGATGAGACGGGGAAGACTGCCCTGCATCTCGCGTGCA
TGGGGGGCCACGCGGAAATCGCTCAGGAGCTTCTAGATGCTAAGGCAGGC
ATTCATGCATCTGACAACAAGGGAGATACGCCGCTGCACATTGCGTGCTC
TCACAAACTTACGTCCCTGGCCCGGCTGCTGGTTGACTGGGGTGCCACTA
TCACACATCGAAATGGAGCAGGCTACACCCCTATTGATGTGGCTCTCATG
GTCAAGAGCGCTGAGCTTGTCAGCATCTTGAGGGGTGATAAATGA
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