mRNA_C-australica_Contig_9958.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Match: J2JZ31_FLASC (Uncharacterized protein n=1 Tax=Flavobacterium sp. (strain CF136) TaxID=1144313 RepID=J2JZ31_FLASC) HSP 1 Score: 63.5 bits (153), Expect = 4.060e-9 Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 Query: 1 GDRVIALVDNARQNTYARNWVKADYSDRVSTVHGRTGNVAGQSGDYN 141
GDR+IA+VDNA +TYA NW ADY+DRV+TV GRTGNV S D +
Sbjct: 349 GDRIIAVVDNASTSTYASNWYLADYTDRVNTVAGRTGNVVITSSDLS 395
BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Match: UPI001CFD4081 (hypothetical protein n=1 Tax=Acuticoccus sediminis TaxID=2184697 RepID=UPI001CFD4081) HSP 1 Score: 61.2 bits (147), Expect = 2.730e-8 Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 1 Query: 4 DRVIALVDNARQNTYARNWVKADYSDRVSTVHGRTGNVAGQSGDYNAGQITETPAAKIMTATER 195
DR+IA DNA T+A NW KADY+D+V V G+TG+V NA I ET AK+MT ER
Sbjct: 106 DRIIATADNASTTTFAGNWFKADYTDQVQRVAGKTGDVT-----LNAEDIAETFNAKVMTLDER 164
BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Match: UPI001CFECCFF (sialate O-acetylesterase n=1 Tax=Acuticoccus sediminis TaxID=2184697 RepID=UPI001CFECCFF) HSP 1 Score: 60.1 bits (144), Expect = 6.900e-8 Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1 Query: 4 DRVIALVDNARQNTYARNWVKADYSDRVSTVHGRTGNVAGQSGDYNAGQITETPAAKIMTATER 195
DR+IA DNA T+A NW KADY+D+V V G+TG+V NA I ET K+MT ER
Sbjct: 106 DRIIATADNASTTTFAGNWFKADYTDQVQRVAGKTGDVT-----LNAEDIAETFGFKVMTLAER 164
BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Match: A0A848KWI7_9ACTN (Uncharacterized protein n=1 Tax=Gordonia asplenii TaxID=2725283 RepID=A0A848KWI7_9ACTN) HSP 1 Score: 56.2 bits (134), Expect = 1.460e-6 Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 1 Query: 49 ARNWVKADYSDRVSTVHGRTGNVAGQSGDYNAGQITETPAAK--IMTATERDAIAAAVPGSRQVGTGTGLAGGGALTSDLTIELSPATQSSLGLADSAVQP 345
A +W V++V+G TG V D + T + + TAT+ A+ V +R V GTGL GGG LT+D +I LS ATQ+SLG ADSAVQP
Sbjct: 389 ASDWTLMVVDMSVTSVNGYTGIVVLSKSDVGLANVDNTSDSNKPVSTATQT-ALNGKVGTARTVSAGTGLTGGGDLTADRSIALSAATQTSLGKADSAVQP 488
BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Match: A0A4R6YIC1_9HYPH (Uncharacterized protein n=1 Tax=Aquamicrobium defluvii TaxID=69279 RepID=A0A4R6YIC1_9HYPH) HSP 1 Score: 51.2 bits (121), Expect = 8.210e-5 Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 1 Query: 85 VSTVHGRTGNVAGQSGDYNAGQITETPAA-KIMTATERDAIAAAVPGSRQVGTGTGLAGGGALTSDLTIELSPATQSSLGLADSAVQPGDLGTVASQD 375
V++V G+TG VA D G + T A K +++ + A+ A + + G GL GGGAL + TI LS A+Q ++ A +AVQPG LG +A+ D
Sbjct: 207 VTSVAGKTGAVALVKADVGLGSVDNTSDADKPVSSAAQSALDAKADKAIAITAGAGLTGGGALDASRTISLSSASQVAIAAAQTAVQPGSLGDLATID 304 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9958.1.1 >prot_C-australica_Contig_9958.1.1 ID=prot_C-australica_Contig_9958.1.1|Name=mRNA_C-australica_Contig_9958.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=133bp GDRVIALVDNARQNTYARNWVKADYSDRVSTVHGRTGNVAGQSGDYNAGQback to top mRNA from alignment at C-australica_Contig_9958:3..401+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_9958.1.1 ID=mRNA_C-australica_Contig_9958.1.1|Name=mRNA_C-australica_Contig_9958.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=399bp|location=Sequence derived from alignment at C-australica_Contig_9958:3..401+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_9958:3..401+ >mRNA_C-australica_Contig_9958.1.1 ID=mRNA_C-australica_Contig_9958.1.1|Name=mRNA_C-australica_Contig_9958.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=399bp|location=Sequence derived from alignment at C-australica_Contig_9958:3..401+ (Chrysoparadoxa australica CS_1217)back to top |