mRNA_C-australica_Contig_9958.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9958.1.1
Unique NamemRNA_C-australica_Contig_9958.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Match: J2JZ31_FLASC (Uncharacterized protein n=1 Tax=Flavobacterium sp. (strain CF136) TaxID=1144313 RepID=J2JZ31_FLASC)

HSP 1 Score: 63.5 bits (153), Expect = 4.060e-9
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 GDRVIALVDNARQNTYARNWVKADYSDRVSTVHGRTGNVAGQSGDYN 141
            GDR+IA+VDNA  +TYA NW  ADY+DRV+TV GRTGNV   S D +
Sbjct:  349 GDRIIAVVDNASTSTYASNWYLADYTDRVNTVAGRTGNVVITSSDLS 395
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BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Match: UPI001CFD4081 (hypothetical protein n=1 Tax=Acuticoccus sediminis TaxID=2184697 RepID=UPI001CFD4081)

HSP 1 Score: 61.2 bits (147), Expect = 2.730e-8
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    4 DRVIALVDNARQNTYARNWVKADYSDRVSTVHGRTGNVAGQSGDYNAGQITETPAAKIMTATER 195
            DR+IA  DNA   T+A NW KADY+D+V  V G+TG+V       NA  I ET  AK+MT  ER
Sbjct:  106 DRIIATADNASTTTFAGNWFKADYTDQVQRVAGKTGDVT-----LNAEDIAETFNAKVMTLDER 164
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BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Match: UPI001CFECCFF (sialate O-acetylesterase n=1 Tax=Acuticoccus sediminis TaxID=2184697 RepID=UPI001CFECCFF)

HSP 1 Score: 60.1 bits (144), Expect = 6.900e-8
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    4 DRVIALVDNARQNTYARNWVKADYSDRVSTVHGRTGNVAGQSGDYNAGQITETPAAKIMTATER 195
            DR+IA  DNA   T+A NW KADY+D+V  V G+TG+V       NA  I ET   K+MT  ER
Sbjct:  106 DRIIATADNASTTTFAGNWFKADYTDQVQRVAGKTGDVT-----LNAEDIAETFGFKVMTLAER 164
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BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Match: A0A848KWI7_9ACTN (Uncharacterized protein n=1 Tax=Gordonia asplenii TaxID=2725283 RepID=A0A848KWI7_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 1.460e-6
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:   49 ARNWVKADYSDRVSTVHGRTGNVAGQSGDYNAGQITETPAAK--IMTATERDAIAAAVPGSRQVGTGTGLAGGGALTSDLTIELSPATQSSLGLADSAVQP 345
            A +W        V++V+G TG V     D     +  T  +   + TAT+  A+   V  +R V  GTGL GGG LT+D +I LS ATQ+SLG ADSAVQP
Sbjct:  389 ASDWTLMVVDMSVTSVNGYTGIVVLSKSDVGLANVDNTSDSNKPVSTATQT-ALNGKVGTARTVSAGTGLTGGGDLTADRSIALSAATQTSLGKADSAVQP 488
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BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Match: A0A4R6YIC1_9HYPH (Uncharacterized protein n=1 Tax=Aquamicrobium defluvii TaxID=69279 RepID=A0A4R6YIC1_9HYPH)

HSP 1 Score: 51.2 bits (121), Expect = 8.210e-5
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:   85 VSTVHGRTGNVAGQSGDYNAGQITETPAA-KIMTATERDAIAAAVPGSRQVGTGTGLAGGGALTSDLTIELSPATQSSLGLADSAVQPGDLGTVASQD 375
            V++V G+TG VA    D   G +  T  A K +++  + A+ A    +  +  G GL GGGAL +  TI LS A+Q ++  A +AVQPG LG +A+ D
Sbjct:  207 VTSVAGKTGAVALVKADVGLGSVDNTSDADKPVSSAAQSALDAKADKAIAITAGAGLTGGGALDASRTISLSSASQVAIAAAQTAVQPGSLGDLATID 304
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9958.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
J2JZ31_FLASC4.060e-963.83Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
UPI001CFD40812.730e-851.56hypothetical protein n=1 Tax=Acuticoccus sediminis... [more]
UPI001CFECCFF6.900e-850.00sialate O-acetylesterase n=1 Tax=Acuticoccus sedim... [more]
A0A848KWI7_9ACTN1.460e-642.57Uncharacterized protein n=1 Tax=Gordonia asplenii ... [more]
A0A4R6YIC1_9HYPH8.210e-538.78Uncharacterized protein n=1 Tax=Aquamicrobium defl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9958contigC-australica_Contig_9958:3..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1144313.PMI10_00666
PFAMsCotH,Laminin_G_3
Model size399
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.65e-10
EggNOG OGs2EXRF@1|root,33R0W@2|Bacteria,4NXTF@976|Bacteroidetes,1IKRK@117743|Flavobacteriia,2NY20@237|Flavobacterium
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588863.4694872-CDS-C-australica_Contig_9958:2..4011682588863.4694872-CDS-C-australica_Contig_9958:2..401Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9958 3..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9958.1.1prot_C-australica_Contig_9958.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9958 3..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9958.1.1

>prot_C-australica_Contig_9958.1.1 ID=prot_C-australica_Contig_9958.1.1|Name=mRNA_C-australica_Contig_9958.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=133bp
GDRVIALVDNARQNTYARNWVKADYSDRVSTVHGRTGNVAGQSGDYNAGQ
ITETPAAKIMTATERDAIAAAVPGSRQVGTGTGLAGGGALTSDLTIELSP
ATQSSLGLADSAVQPGDLGTVASQDASDVNLSG
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mRNA from alignment at C-australica_Contig_9958:3..401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9958.1.1 ID=mRNA_C-australica_Contig_9958.1.1|Name=mRNA_C-australica_Contig_9958.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=399bp|location=Sequence derived from alignment at C-australica_Contig_9958:3..401+ (Chrysoparadoxa australica CS_1217)
GGCGATCGCGTCATCGCCTTGGTCGACAATGCCCGCCAGAACACGTACGC
GCGCAACTGGGTCAAGGCCGACTACTCCGATCGCGTTTCCACCGTCCACG
GCCGTACCGGCAATGTCGCGGGTCAGAGCGGTGACTACAACGCCGGCCAG
ATTACTGAAACGCCGGCCGCGAAAATAATGACCGCGACTGAGCGCGATGC
AATCGCCGCGGCAGTGCCGGGTTCCAGGCAGGTCGGCACGGGCACCGGGC
TGGCCGGCGGCGGCGCCCTCACAAGCGACTTGACGATCGAGCTCTCGCCG
GCCACACAGTCCAGTCTCGGCCTGGCCGATAGCGCCGTGCAGCCTGGCGA
TCTGGGGACTGTCGCCTCGCAGGACGCGAGTGACGTCAATTTATCGGGC
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Coding sequence (CDS) from alignment at C-australica_Contig_9958:3..401+

>mRNA_C-australica_Contig_9958.1.1 ID=mRNA_C-australica_Contig_9958.1.1|Name=mRNA_C-australica_Contig_9958.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=399bp|location=Sequence derived from alignment at C-australica_Contig_9958:3..401+ (Chrysoparadoxa australica CS_1217)
GGCGATCGCGTCATCGCCTTGGTCGACAATGCCCGCCAGAACACGTACGC
GCGCAACTGGGTCAAGGCCGACTACTCCGATCGCGTTTCCACCGTCCACG
GCCGTACCGGCAATGTCGCGGGTCAGAGCGGTGACTACAACGCCGGCCAG
ATTACTGAAACGCCGGCCGCGAAAATAATGACCGCGACTGAGCGCGATGC
AATCGCCGCGGCAGTGCCGGGTTCCAGGCAGGTCGGCACGGGCACCGGGC
TGGCCGGCGGCGGCGCCCTCACAAGCGACTTGACGATCGAGCTCTCGCCG
GCCACACAGTCCAGTCTCGGCCTGGCCGATAGCGCCGTGCAGCCTGGCGA
TCTGGGGACTGTCGCCTCGCAGGACGCGAGTGACGTCAATTTATCGGGC
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