mRNA_C-australica_Contig_995.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_995.5.1
Unique NamemRNA_C-australica_Contig_995.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_995.5.1 vs. uniprot
Match: A0A6G0XIB7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIB7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.570e-7
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  270 PQRLTLGLIQSCLALSTPETDDDKENDDYTGLLNTTSLRLGWQKIEVIENLDMFTSLRELYLQHNNI 470
            P ++ + LI+ C+ L+   TDD++ +     LL  T LRL WQ+I  IENLD+F+ +RELYLQHN I
Sbjct:   22 PAKINMLLIRKCMNLTRDSTDDEEASQ----LLLKTVLRLDWQRIGKIENLDVFSHIRELYLQHNLI 84
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BLAST of mRNA_C-australica_Contig_995.5.1 vs. uniprot
Match: A0A485LBW6_9STRA (Aste57867_19032 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBW6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.400e-6
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 3 
Query:  270 PQRLTLGLIQSCLALST-PETDDDKENDDYTGLLNTTSLRLGWQKIEVIENLDMFTSLRELYLQHNNI 470
            P ++ + LI+ C+ L   P + DD  + +   LL  T+LRL W  I  IENLD+F+ +RELYLQHN I
Sbjct:   17 PTKINMQLIRKCMNLPRGPTSADDDPDAEVDALLKKTTLRLDWLNIGKIENLDVFSHIRELYLQHNAI 84
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BLAST of mRNA_C-australica_Contig_995.5.1 vs. uniprot
Match: A0A024TZL3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZL3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.690e-6
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 3 
Query:  270 PQRLTLGLIQSCLAL--STPETDDDKENDDYTGLLNTTSLRLGWQKIEVIENLDMFTSLRELYLQHNNI 470
            P R+ + LI+ C++L  S   T  D ++ +   LL  T LRL WQ I  IENLD+F+ +R+LYLQHN I
Sbjct:   26 PVRINMQLIRKCMSLPPSAHATAVDDDDAEVESLLAKTVLRLDWQGISKIENLDVFSHIRDLYLQHNAI 94
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BLAST of mRNA_C-australica_Contig_995.5.1 vs. uniprot
Match: A0A1W0ACD8_9STRA (Leucine-rich repeat-containing protein 46 isoform X1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACD8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.210e-5
Identity = 95/202 (47.03%), Postives = 121/202 (59.90%), Query Frame = 3 
Query:  291 LIQSCLALSTPETDDDKENDDYT-GLLNTTSLRLGWQKIEVIENLDMFTSLRELYLQHNNITHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEELRCLQGLRSLEIRHNSVCEADNFHSRLLHDLLPNLLELNCRQTAPVAVDITVHEEDGTSKVVPLEVSAFDCMCDLARELCDEHGLIGQE 893
            +I+  ++++  E   D++NDD    LL  + LRL W  +  IENLD FT +RELYLQHN I  +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   D++EL   Q L  L +  N   ++ + ++++  D LPNLL+                  DG  +  P  +S      D   EL +EH L  QE
Sbjct:    3 VIRKAMSMAKDEALIDQDNDDEVENLLKRSVLRLDWLNVSKIENLDAFTHIRELYLQHNLIA-VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEELDLDELP--QSLLVLRVTGNPWADSRDNYAQICFDHLPNLLQC-----------------DGYRRNDPARLSPTHLHSDRHAELMEEHKLEEQE 184
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BLAST of mRNA_C-australica_Contig_995.5.1 vs. uniprot
Match: T0R6H2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R6H2_SAPDV)

HSP 1 Score: 55.5 bits (132), Expect = 5.660e-5
Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 3 
Query:  270 PQRLTLGLIQSCLALSTPETDDDK----ENDDYTGLLNTTSLRLGWQKIEVIENLDMFTSLRELYLQHNNI 470
            P +LT+ LI+  + L  PET  D     E D+   LL    LRL W  I  IENLD FT +RELYLQHN I
Sbjct:    5 PVKLTMQLIRKSMQLR-PETAIDDGLAVEGDEVEHLLTRNVLRLDWLGIGKIENLDAFTHVRELYLQHNAI 74
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_995.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6G0XIB7_9STRA5.570e-747.76Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LBW6_9STRA1.400e-645.59Aste57867_19032 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TZL3_9STRA2.690e-646.38Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1W0ACD8_9STRA5.210e-547.03Leucine-rich repeat-containing protein 46 isoform ... [more]
T0R6H2_SAPDV5.660e-549.30Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_995contigC-australica_Contig_995:15264..17513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008871979.1
PFAMsLRR_4,LRR_9
Model size1218
Max annot lvl2759|Eukaryota
KEGG koko:K10411
KEGG Pathwayko05016,map05016
Hectar predicted targeting categorysignal peptide
Exons10
Evalue1.46e-07
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-00_000990.1
Descriptionaxoneme assembly
Cds size957
COG categoryL
BRITEko00000,ko00001,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_995.5.1prot_C-australica_Contig_995.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_995 15264..17253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588862.7443492-CDS-C-australica_Contig_995:15263..153051682588862.7443492-CDS-C-australica_Contig_995:15263..15305Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 15264..15305 -
1682588862.755875-CDS-C-australica_Contig_995:15379..154301682588862.755875-CDS-C-australica_Contig_995:15379..15430Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 15380..15430 -
1682588862.7653463-CDS-C-australica_Contig_995:15624..157441682588862.7653463-CDS-C-australica_Contig_995:15624..15744Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 15625..15744 -
1682588862.7751484-CDS-C-australica_Contig_995:15823..159221682588862.7751484-CDS-C-australica_Contig_995:15823..15922Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 15824..15922 -
1682588862.7848995-CDS-C-australica_Contig_995:16058..161571682588862.7848995-CDS-C-australica_Contig_995:16058..16157Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 16059..16157 -
1682588862.796805-CDS-C-australica_Contig_995:16244..163131682588862.796805-CDS-C-australica_Contig_995:16244..16313Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 16245..16313 -
1682588862.8101382-CDS-C-australica_Contig_995:16491..165971682588862.8101382-CDS-C-australica_Contig_995:16491..16597Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 16492..16597 -
1682588862.8202672-CDS-C-australica_Contig_995:16731..168201682588862.8202672-CDS-C-australica_Contig_995:16731..16820Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 16732..16820 -
1682588862.829316-CDS-C-australica_Contig_995:16895..170461682588862.829316-CDS-C-australica_Contig_995:16895..17046Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 16896..17046 -
1682588862.8379574-CDS-C-australica_Contig_995:17122..172531682588862.8379574-CDS-C-australica_Contig_995:17122..17253Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 17123..17253 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588862.846985-UTR-C-australica_Contig_995:17253..175131682588862.846985-UTR-C-australica_Contig_995:17253..17513Chrysoparadoxa australica CS_1217UTRC-australica_Contig_995 17254..17513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_995.5.1

>prot_C-australica_Contig_995.5.1 ID=prot_C-australica_Contig_995.5.1|Name=mRNA_C-australica_Contig_995.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=319bp
MSHPQRLTLGLIQSCLALSTPETDDDKENDDYTGLLNTTSLRLGWQKIEV
IENLDMFTSLRELYLQHNNITHITGLDTLLNLKLLSLGHNRIAKVSGLKP
LKKLVLLDLSHNQLSNESDVEELRCLQGLRSLEIRHNSVCEADNFHSRLL
HDLLPNLLELNCRQTAPVAVDITVHEEDGTSKVVPLEVSAFDCMCDLARE
LCDEHGLIGQEDALQAELEGALRKENRRNRVLGVGEAKKELGEGQDREVT
ALQDIERAQEAFRTETERMFGEVKEGILREARAKAQTKVAAARARGEEHS
EEVAKIIQQARDQFKHHRE
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mRNA from alignment at C-australica_Contig_995:15264..17513-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_995.5.1 ID=mRNA_C-australica_Contig_995.5.1|Name=mRNA_C-australica_Contig_995.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2250bp|location=Sequence derived from alignment at C-australica_Contig_995:15264..17513- (Chrysoparadoxa australica CS_1217)
GGCCTAACTTGAAGTGCTTCGTGAGATATGTCGGTTTTTGTGACTTCCGA
CAGCTGATCGTTTATCGAGCCCCTTTTGAAAAAATTGGAGTAAGAGCTCC
TCGACGGGTCCTCGCGCCTAGGGATGTGTCCAACCTCAAGGCAGAGCATC
TCCCTCCACTCTCCAGCCTCCCTCAGTAGATTCACTGCTTCTGCTTCTCC
CCATTGCTCCTTGCATGCCAGCCTCCTAACGCACGCACCTTGCAACGGTT
TGGCCCAGCGATGAGTCACCCTCAGAGACTCACGCTGGGATTGATTCAGT
CATGCTTAGCGCTGAGCACCCCCGAGACTGACGACGACAAGGAGAACGAT
GATTATACTGGGCTCCTCAACACGACATCACTTAGGCTGGGGTATGCTTC
TCTCTCTTCCTTCGCTCTCTCTTCCTCCCTGGCATGACTACCTCTCCCCA
CCCCCGTACTACACAAGGTGGCAAAAAATAGAGGTGATTGAGAACCTGGA
CATGTTCACTTCACTGCGGGAGTTATACCTTCAACACAACAACATAACAC
ATATTACGGGATTAGATACTCTCCTCAACCTCAAGCTTCTTTCATTGGGG
CATAATAGAATAGCCAAGGTAATCAATCTCCTGTAACCTGCGTGCACCCA
CGCTGCTACTGTGACACAAACACACCACTCCGTTCTTGGGCAGGTCTCAG
GACTGAAGCCACTGAAGAAGCTCGTACTGCTTGATTTGTCACACAATCAG
CTCTCAAACGAGTCAGACGTGGAAGAGCTCAGGTATGTCCTCCAGTGACA
GAACGATGCTGAGTGGGACCAAAACGAGACCGCTATATACTAACCTTACC
AGACTAATCATCTTTGACAGCACCTGCTCTCTATCTCTCACTAGTCATCT
CTGATCATCTGACCAGGTGCCTGCAAGGCCTCCGCTCGTTAGAGATACGT
CACAACTCGGTGTGCGAGGCTGACAATTTCCACAGCAGGCTACTGCATGA
CCTCCTGCCCAACCTGCTAGAGGTACGCCTTGCCCTGGGAGTCTTGGAAC
CGTCTCTTGGGACTTGACCGTGTACTATATAGATCCAACACAGCGCTTTC
CATCTGTCCAGCTCAGCCTCAAGTGACTACTGGACTGTCTTGTCTTAATC
TAATTGACTGCTGAGTTAGCTAAACCATGGATGGATTTGCCCTCCTTCAG
CTCAATTGTCGGCAAACGGCTCCGGTGGCAGTGGACATCACCGTGCATGA
AGAAGATGGCACCTCTAAGGTACGTACGGCTCTTCCCCCTCTCACAGCGT
CTGCATTATCGACACATGCCTCAAGTAGAGCACCTCAAACGCCCCCATCA
CAACAGGTTGTGCCACTGGAGGTGTCCGCCTTTGACTGCATGTGTGACTT
GGCGAGGGAGCTCTGTGATGAGCATGGGCTAATCGGGCAGGAGGATGCAC
TGCAAGTGAGCAACTTTGGCTTTCATCTCTAAAGCTGACCCTTGGAGACA
TCTAACATTTAACTTGAATATAGTCGTGTGGCTGACTGACGCCTGTATCT
CTGACTTTACCTTATTATTAATCCTTCTTTTTAACCACTAGGCGGAGCTA
GAAGGTGCTTTGCGAAAGGAAAACAGGCGGAACCGGGTGCTGGGAGTGGG
AGAAGCAAAGAAAGAGCTGGGAGAGGGACAGGACAGGGAGGTGATGCTTG
GCCTCATCCCAACTCTTGCAGCTGACAACTGAGATCATGCCTCACCGGTT
GACCTTGCAACTTTATCAGGTTACGGCGCTGCAAGACATTGAGCGTGCCC
AGGAGGCCTTCAGGACAGAGACGGAGCGGATGTTTGGGGAGGTGAAGGAG
GGCATCCTGAGGGAGGCTCGTGCAAAGGCTCAGACCAAGGTAGCAGGCTG
AACCTGAAGCAAACACAAGCTCTCACATATCGTTTAGCATTGACTGAGGC
CTTGTTGCGACTAGCAACACAGTGTGGCCTTGATACCCCATTCCCGCTGC
ATAGCTAACCGAATCTAAAATATATAATATACCTCTGATGACACCTGCCA
TGACCTTTCCTGTTTTGCATCTGCTCTATCAAGGTGGCTGCTGCAAGAGC
AAGAGGGGAGGAGCATTCGGAGGAGGTTGCCAAGGTAGCATAAGCTCTGT
CTTTCTTTTATTCACTTGGTCACTGCCATTCACTCTGCTGACATTGCCAA
CTTTTTAGATAATCCAACAAGCGAGGGACCAATTTAAACACCACAGAGAG
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Coding sequence (CDS) from alignment at C-australica_Contig_995:15264..17513-

>mRNA_C-australica_Contig_995.5.1 ID=mRNA_C-australica_Contig_995.5.1|Name=mRNA_C-australica_Contig_995.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=957bp|location=Sequence derived from alignment at C-australica_Contig_995:15264..17513- (Chrysoparadoxa australica CS_1217)
ATGAGTCACCCTCAGAGACTCACGCTGGGATTGATTCAGTCATGCTTAGC
GCTGAGCACCCCCGAGACTGACGACGACAAGGAGAACGATGATTATACTG
GGCTCCTCAACACGACATCACTTAGGCTGGGGTGGCAAAAAATAGAGGTG
ATTGAGAACCTGGACATGTTCACTTCACTGCGGGAGTTATACCTTCAACA
CAACAACATAACACATATTACGGGATTAGATACTCTCCTCAACCTCAAGC
TTCTTTCATTGGGGCATAATAGAATAGCCAAGGTCTCAGGACTGAAGCCA
CTGAAGAAGCTCGTACTGCTTGATTTGTCACACAATCAGCTCTCAAACGA
GTCAGACGTGGAAGAGCTCAGGTGCCTGCAAGGCCTCCGCTCGTTAGAGA
TACGTCACAACTCGGTGTGCGAGGCTGACAATTTCCACAGCAGGCTACTG
CATGACCTCCTGCCCAACCTGCTAGAGCTCAATTGTCGGCAAACGGCTCC
GGTGGCAGTGGACATCACCGTGCATGAAGAAGATGGCACCTCTAAGGTTG
TGCCACTGGAGGTGTCCGCCTTTGACTGCATGTGTGACTTGGCGAGGGAG
CTCTGTGATGAGCATGGGCTAATCGGGCAGGAGGATGCACTGCAAGCGGA
GCTAGAAGGTGCTTTGCGAAAGGAAAACAGGCGGAACCGGGTGCTGGGAG
TGGGAGAAGCAAAGAAAGAGCTGGGAGAGGGACAGGACAGGGAGGTTACG
GCGCTGCAAGACATTGAGCGTGCCCAGGAGGCCTTCAGGACAGAGACGGA
GCGGATGTTTGGGGAGGTGAAGGAGGGCATCCTGAGGGAGGCTCGTGCAA
AGGCTCAGACCAAGGTGGCTGCTGCAAGAGCAAGAGGGGAGGAGCATTCG
GAGGAGGTTGCCAAGATAATCCAACAAGCGAGGGACCAATTTAAACACCA
CAGAGAG
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