Homology
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match:
A0A222DZ62_9RHOB (Homoserine/homoserine lactone efflux protein n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222DZ62_9RHOB)
HSP 1 Score: 280 bits (716), Expect = 3.410e-92
Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 3
Query: 402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGA VAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFIL VLAFVPQFIDPT PVLPQFLI
Sbjct: 1 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGALVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILFVLAFVPQFIDPTLPVLPQFLI 148
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match:
A0A222DZ00_9RHOB (Type-4 uracil-DNA glycosylase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222DZ00_9RHOB)
HSP 1 Score: 268 bits (684), Expect = 1.890e-86
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 1
Query: 1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTLT 402
QGKPFVG+AGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTLT
Sbjct: 130 QGKPFVGQAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTLT 263
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match:
UPI001C47A647 (LysE family translocator n=1 Tax=Roseobacteraceae TaxID=2854170 RepID=UPI001C47A647)
HSP 1 Score: 263 bits (672), Expect = 1.630e-85
Identity = 133/148 (89.86%), Postives = 139/148 (93.92%), Query Frame = 3
Query: 402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
MIVDPILLLAF+P GLALN+TPGPDMMFCLAQGLRGGARCGWAAS GVALGGMVHVLLAGLGLGA VAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAP + P++A +QGFVVNITNPKFIL VLAFVPQFIDP PVLPQFLI
Sbjct: 1 MIVDPILLLAFVPAGLALNLTPGPDMMFCLAQGLRGGARCGWAASTGVALGGMVHVLLAGLGLGALVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPALTPSRAMRQGFVVNITNPKFILFVLAFVPQFIDPALPVLPQFLI 148
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match:
A0A0B3S209_9RHOB (Threonine transporter RhtB n=4 Tax=Mameliella TaxID=1434019 RepID=A0A0B3S209_9RHOB)
HSP 1 Score: 256 bits (653), Expect = 1.240e-82
Identity = 131/148 (88.51%), Postives = 138/148 (93.24%), Query Frame = 3
Query: 402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
MIVDPILLLAFIP GLALNVTPGPDMMFCLAQGLRGGARCGWAAS+GVALGGM+HVLLAGLGLGA VAALPGAFDVIRW GAAYLAWIAWKTLRTPIAGSDAP + PA+A +QGFVVNITNPK+IL VLAFVPQFIDP VLPQFL+
Sbjct: 1 MIVDPILLLAFIPAGLALNVTPGPDMMFCLAQGLRGGARCGWAASSGVALGGMLHVLLAGLGLGALVAALPGAFDVIRWAGAAYLAWIAWKTLRTPIAGSDAPPLAPAQAFRQGFVVNITNPKYILFVLAFVPQFIDPAKAVLPQFLV 148
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match:
A0A239BL69_9RHOB (Type-4 uracil-DNA glycosylase n=2 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239BL69_9RHOB)
HSP 1 Score: 248 bits (634), Expect = 5.800e-79
Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 1
Query: 1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTL 399
QGKPFVGRAGQLLDRMLAAV LSR D+VYITNVLPWRPPQNRDPKPDEIAML+PFLQRHIALVNPD+LVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTP AKREAW D LAL+A+LR L
Sbjct: 124 QGKPFVGRAGQLLDRMLAAVSLSRADTVYITNVLPWRPPQNRDPKPDEIAMLMPFLQRHIALVNPDLLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPHAKREAWGDWLALKARLRAL 256
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match:
UPI000EF43D56 (LysE family translocator n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF43D56)
HSP 1 Score: 241 bits (615), Expect = 7.180e-77
Identity = 120/148 (81.08%), Postives = 132/148 (89.19%), Query Frame = 3
Query: 402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
MIVDP++LLAFIP GLALN+TPGPDM+FCLAQGL+GG R GWAAS GV LGG+VHV LAGLGLGA VAALPGAFDVIRW GAAYLAWIAWKTLRTP+AG DAP M PAKA +QGFVVN+TNPK+IL VLAFVPQF+DP VLPQFL+
Sbjct: 1 MIVDPVMLLAFIPAGLALNITPGPDMLFCLAQGLKGGPRAGWAASTGVGLGGVVHVTLAGLGLGALVAALPGAFDVIRWVGAAYLAWIAWKTLRTPLAGGDAPAMTPAKALRQGFVVNLTNPKYILFVLAFVPQFVDPARAVLPQFLV 148
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match:
A0A238K4G4_9RHOB (Type-4 uracil-DNA glycosylase n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K4G4_9RHOB)
HSP 1 Score: 238 bits (607), Expect = 7.770e-75
Identity = 115/133 (86.47%), Postives = 125/133 (93.98%), Query Frame = 1
Query: 1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTL 399
QGKPFVGRAGQLLDRML AVGLSR +SVYITNVLPWRPPQNR+P P+EIAML+PFL+RHIAL +PD+LVIMGNTSAQALLG+RGITRLRG W EAAGRPALPMLHPAYLLRTP AKREAWADLL+LQA+LR L
Sbjct: 127 QGKPFVGRAGQLLDRMLGAVGLSRTESVYITNVLPWRPPQNREPTPEEIAMLLPFLRRHIALADPDLLVIMGNTSAQALLGKRGITRLRGTWAEAAGRPALPMLHPAYLLRTPAAKREAWADLLSLQARLRAL 259
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match:
A0A238K494_9RHOB (Homoserine/homoserine lactone efflux protein n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K494_9RHOB)
HSP 1 Score: 234 bits (597), Expect = 3.830e-74
Identity = 119/148 (80.41%), Postives = 132/148 (89.19%), Query Frame = 3
Query: 402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
MIVDP++LLAF+P LALNVTPGPDMMFCLAQGLRGG RCGWAASAGV + GMVHVLLAGLGLGA VAALPGAFDVIRWGGAAYLAWIAWKTLRTP+AG +A + A+AA+QGFVVN+TNPKFIL VLAFVPQF++P VL QFL+
Sbjct: 1 MIVDPVMLLAFVPASLALNVTPGPDMMFCLAQGLRGGPRCGWAASAGVTVSGMVHVLLAGLGLGALVAALPGAFDVIRWGGAAYLAWIAWKTLRTPLAGVEAAPLSLARAARQGFVVNMTNPKFILFVLAFVPQFVNPAGHVLAQFLV 148
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match:
A3JXS0_9RHOB (Transmembrane amino acid efflux protein n=3 Tax=Sagittula TaxID=58842 RepID=A3JXS0_9RHOB)
HSP 1 Score: 234 bits (596), Expect = 6.200e-74
Identity = 118/147 (80.27%), Postives = 132/147 (89.80%), Query Frame = 3
Query: 405 IVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
IVDP++LLAF+PVGLALNVTPGPDM+FC+AQGLRGG RCGWAASAGVA GGMVHVLLAGLGLGA VAA+PGAFD IRW GAAYL +IAWKT RTP+AG D+P + P AA+QGFVVN+TNPKFIL VLAFVPQF+DP+ PVL QFLI
Sbjct: 6 IVDPVMLLAFLPVGLALNVTPGPDMLFCMAQGLRGGPRCGWAASAGVASGGMVHVLLAGLGLGALVAAVPGAFDAIRWAGAAYLVYIAWKTWRTPLAGVDSPPLRPFHAARQGFVVNMTNPKFILFVLAFVPQFVDPSRPVLAQFLI 152
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match:
A0A0B3RXZ6_9RHOB (Type-4 uracil-DNA glycosylase n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3RXZ6_9RHOB)
HSP 1 Score: 236 bits (601), Expect = 7.120e-74
Identity = 115/133 (86.47%), Postives = 123/133 (92.48%), Query Frame = 1
Query: 1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTL 399
QGKPFVGRAGQLLDRMLAAVGLSR +SVYITNVLPWRPPQNRDPKPDEIAML+PFL RHIAL +PD+LVIMGNTS QALLGRRGITRLRG W EAA RPALPMLHPAYLLR P AKREAWAD+L+L++KLR L
Sbjct: 131 QGKPFVGRAGQLLDRMLAAVGLSRAESVYITNVLPWRPPQNRDPKPDEIAMLLPFLHRHIALADPDLLVIMGNTSCQALLGRRGITRLRGTWVEAAERPALPMLHPAYLLRNPQAKREAWADMLSLKSKLRAL 263
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 3.41e-92 / Id = 97.97 Expect = 1.89e-86 / Id = 99.25 Expect = 1.63e-85 / Id = 89.86 Expect = 1.24e-82 / Id = 88.51 Expect = 5.80e-79 / Id = 91.73 Expect = 7.18e-77 / Id = 81.08 Expect = 7.77e-75 / Id = 86.47 Expect = 3.83e-74 / Id = 80.41 Expect = 6.20e-74 / Id = 80.27 Expect = 7.12e-74 / Id = 86.47 Sequence A0A222DZ62_9RHOB A0A222DZ00_9RHOB UPI001C47A647 A0A0B3S209_9RHOB A0A239BL69_9RHOB UPI000EF43D56 A0A238K4G4_9RHOB A0A238K494_9RHOB A3JXS0_9RHOB A0A0B3RXZ6_9RHOB Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9943.1.1
>prot_C-australica_Contig_9943.1.1 ID=prot_C-australica_Contig_9943.1.1|Name=mRNA_C-australica_Contig_9943.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=148bp
MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVAL back to top mRNA from alignment at C-australica_Contig_9943:3..847-
Legend: UTR CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9943.1.1 ID=mRNA_C-australica_Contig_9943.1.1|Name=mRNA_C-australica_Contig_9943.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=845bp|location=Sequence derived from alignment at C-australica_Contig_9943:3..847- (Chrysoparadoxa australica CS_1217)CAAGGCAAGCCGTTTGTCGGGCGGGCGGGGCAGTTGCTGGACCGGATGCT
GGCAGCGGTGGGCCTGAGCCGGGTCGACTCGGTCTACATCACCAATGTTC
TGCCGTGGCGACCGCCGCAGAACCGCGATCCCAAACCGGATGAGATTGCC
ATGCTGATTCCGTTCCTCCAGCGGCATATCGCTTTGGTCAATCCGGATGT
GCTGGTGATCATGGGCAACACTTCGGCGCAGGCCTTGTTGGGGCGGCGCG
GCATCACCCGGTTGCGCGGCCAGTGGCAAGAGGCGGCAGGGCGACCCGCG
TTGCCGATGTTGCATCCTGCCTATCTGTTGCGCACGCCGGGGGCCAAACG
TGAGGCCTGGGCCGACCTGCTGGCGTTGCAGGCGAAATTGAGGACGTTGA
C ATGATCGTCGATCCCATCCTGTTGCTGGCGTTCATACCTGTCGGTCTGG
CGCTGAACGTCACACCCGGCCCGGACATGATGTTTTGTCTGGCGCAAGGG
TTGCGGGGGGGCGCGCGTTGTGGCTGGGCCGCCTCTGCCGGTGTTGCGCT
GGGCGGCATGGTGCATGTCCTGCTGGCTGGGCTTGGGCTGGGCGCGCGGG
TCGCGGCATTGCCGGGAGCCTTTGATGTGATCCGGTGGGGCGGGGCGGCC
TATCTGGCATGGATCGCGTGGAAGACGTTGCGAACCCCCATCGCGGGCAG
CGACGCCCCCATGATGGTGCCTGCCAAGGCTGCAAAGCAGGGGTTTGTGG
TCAACATTACCAATCCCAAGTTCATCCTTATCGTGCTGGCCTTTGTGCCC
CAGTTCATTGACCCCACATTTCCGGTCCTGCCGCAGTTCCTGATA back to top Coding sequence (CDS) from alignment at C-australica_Contig_9943:3..847-
>mRNA_C-australica_Contig_9943.1.1 ID=mRNA_C-australica_Contig_9943.1.1|Name=mRNA_C-australica_Contig_9943.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=444bp|location=Sequence derived from alignment at C-australica_Contig_9943:3..847- (Chrysoparadoxa australica CS_1217) back to top