mRNA_C-australica_Contig_9943.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9943.1.1
Unique NamemRNA_C-australica_Contig_9943.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A222DZ62_9RHOB (Homoserine/homoserine lactone efflux protein n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222DZ62_9RHOB)

HSP 1 Score: 280 bits (716), Expect = 3.410e-92
Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 3
Query:  402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
            MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGA VAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFIL VLAFVPQFIDPT PVLPQFLI
Sbjct:    1 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGALVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILFVLAFVPQFIDPTLPVLPQFLI 148          
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A222DZ00_9RHOB (Type-4 uracil-DNA glycosylase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222DZ00_9RHOB)

HSP 1 Score: 268 bits (684), Expect = 1.890e-86
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 1
Query:    1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTLT 402
            QGKPFVG+AGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTLT
Sbjct:  130 QGKPFVGQAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTLT 263          
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: UPI001C47A647 (LysE family translocator n=1 Tax=Roseobacteraceae TaxID=2854170 RepID=UPI001C47A647)

HSP 1 Score: 263 bits (672), Expect = 1.630e-85
Identity = 133/148 (89.86%), Postives = 139/148 (93.92%), Query Frame = 3
Query:  402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
            MIVDPILLLAF+P GLALN+TPGPDMMFCLAQGLRGGARCGWAAS GVALGGMVHVLLAGLGLGA VAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAP + P++A +QGFVVNITNPKFIL VLAFVPQFIDP  PVLPQFLI
Sbjct:    1 MIVDPILLLAFVPAGLALNLTPGPDMMFCLAQGLRGGARCGWAASTGVALGGMVHVLLAGLGLGALVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPALTPSRAMRQGFVVNITNPKFILFVLAFVPQFIDPALPVLPQFLI 148          
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A0B3S209_9RHOB (Threonine transporter RhtB n=4 Tax=Mameliella TaxID=1434019 RepID=A0A0B3S209_9RHOB)

HSP 1 Score: 256 bits (653), Expect = 1.240e-82
Identity = 131/148 (88.51%), Postives = 138/148 (93.24%), Query Frame = 3
Query:  402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
            MIVDPILLLAFIP GLALNVTPGPDMMFCLAQGLRGGARCGWAAS+GVALGGM+HVLLAGLGLGA VAALPGAFDVIRW GAAYLAWIAWKTLRTPIAGSDAP + PA+A +QGFVVNITNPK+IL VLAFVPQFIDP   VLPQFL+
Sbjct:    1 MIVDPILLLAFIPAGLALNVTPGPDMMFCLAQGLRGGARCGWAASSGVALGGMLHVLLAGLGLGALVAALPGAFDVIRWAGAAYLAWIAWKTLRTPIAGSDAPPLAPAQAFRQGFVVNITNPKYILFVLAFVPQFIDPAKAVLPQFLV 148          
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A239BL69_9RHOB (Type-4 uracil-DNA glycosylase n=2 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239BL69_9RHOB)

HSP 1 Score: 248 bits (634), Expect = 5.800e-79
Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 1
Query:    1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTL 399
            QGKPFVGRAGQLLDRMLAAV LSR D+VYITNVLPWRPPQNRDPKPDEIAML+PFLQRHIALVNPD+LVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTP AKREAW D LAL+A+LR L
Sbjct:  124 QGKPFVGRAGQLLDRMLAAVSLSRADTVYITNVLPWRPPQNRDPKPDEIAMLMPFLQRHIALVNPDLLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPHAKREAWGDWLALKARLRAL 256          
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: UPI000EF43D56 (LysE family translocator n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF43D56)

HSP 1 Score: 241 bits (615), Expect = 7.180e-77
Identity = 120/148 (81.08%), Postives = 132/148 (89.19%), Query Frame = 3
Query:  402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
            MIVDP++LLAFIP GLALN+TPGPDM+FCLAQGL+GG R GWAAS GV LGG+VHV LAGLGLGA VAALPGAFDVIRW GAAYLAWIAWKTLRTP+AG DAP M PAKA +QGFVVN+TNPK+IL VLAFVPQF+DP   VLPQFL+
Sbjct:    1 MIVDPVMLLAFIPAGLALNITPGPDMLFCLAQGLKGGPRAGWAASTGVGLGGVVHVTLAGLGLGALVAALPGAFDVIRWVGAAYLAWIAWKTLRTPLAGGDAPAMTPAKALRQGFVVNLTNPKYILFVLAFVPQFVDPARAVLPQFLV 148          
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A238K4G4_9RHOB (Type-4 uracil-DNA glycosylase n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K4G4_9RHOB)

HSP 1 Score: 238 bits (607), Expect = 7.770e-75
Identity = 115/133 (86.47%), Postives = 125/133 (93.98%), Query Frame = 1
Query:    1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTL 399
            QGKPFVGRAGQLLDRML AVGLSR +SVYITNVLPWRPPQNR+P P+EIAML+PFL+RHIAL +PD+LVIMGNTSAQALLG+RGITRLRG W EAAGRPALPMLHPAYLLRTP AKREAWADLL+LQA+LR L
Sbjct:  127 QGKPFVGRAGQLLDRMLGAVGLSRTESVYITNVLPWRPPQNREPTPEEIAMLLPFLRRHIALADPDLLVIMGNTSAQALLGKRGITRLRGTWAEAAGRPALPMLHPAYLLRTPAAKREAWADLLSLQARLRAL 259          
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A238K494_9RHOB (Homoserine/homoserine lactone efflux protein n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K494_9RHOB)

HSP 1 Score: 234 bits (597), Expect = 3.830e-74
Identity = 119/148 (80.41%), Postives = 132/148 (89.19%), Query Frame = 3
Query:  402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
            MIVDP++LLAF+P  LALNVTPGPDMMFCLAQGLRGG RCGWAASAGV + GMVHVLLAGLGLGA VAALPGAFDVIRWGGAAYLAWIAWKTLRTP+AG +A  +  A+AA+QGFVVN+TNPKFIL VLAFVPQF++P   VL QFL+
Sbjct:    1 MIVDPVMLLAFVPASLALNVTPGPDMMFCLAQGLRGGPRCGWAASAGVTVSGMVHVLLAGLGLGALVAALPGAFDVIRWGGAAYLAWIAWKTLRTPLAGVEAAPLSLARAARQGFVVNMTNPKFILFVLAFVPQFVNPAGHVLAQFLV 148          
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A3JXS0_9RHOB (Transmembrane amino acid efflux protein n=3 Tax=Sagittula TaxID=58842 RepID=A3JXS0_9RHOB)

HSP 1 Score: 234 bits (596), Expect = 6.200e-74
Identity = 118/147 (80.27%), Postives = 132/147 (89.80%), Query Frame = 3
Query:  405 IVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845
            IVDP++LLAF+PVGLALNVTPGPDM+FC+AQGLRGG RCGWAASAGVA GGMVHVLLAGLGLGA VAA+PGAFD IRW GAAYL +IAWKT RTP+AG D+P + P  AA+QGFVVN+TNPKFIL VLAFVPQF+DP+ PVL QFLI
Sbjct:    6 IVDPVMLLAFLPVGLALNVTPGPDMLFCMAQGLRGGPRCGWAASAGVASGGMVHVLLAGLGLGALVAAVPGAFDAIRWAGAAYLVYIAWKTWRTPLAGVDSPPLRPFHAARQGFVVNMTNPKFILFVLAFVPQFVDPSRPVLAQFLI 152          
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A0B3RXZ6_9RHOB (Type-4 uracil-DNA glycosylase n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3RXZ6_9RHOB)

HSP 1 Score: 236 bits (601), Expect = 7.120e-74
Identity = 115/133 (86.47%), Postives = 123/133 (92.48%), Query Frame = 1
Query:    1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTL 399
            QGKPFVGRAGQLLDRMLAAVGLSR +SVYITNVLPWRPPQNRDPKPDEIAML+PFL RHIAL +PD+LVIMGNTS QALLGRRGITRLRG W EAA RPALPMLHPAYLLR P AKREAWAD+L+L++KLR L
Sbjct:  131 QGKPFVGRAGQLLDRMLAAVGLSRAESVYITNVLPWRPPQNRDPKPDEIAMLLPFLHRHIALADPDLLVIMGNTSCQALLGRRGITRLRGTWVEAAERPALPMLHPAYLLRNPQAKREAWADMLSLKSKLRAL 263          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222DZ62_9RHOB3.410e-9297.97Homoserine/homoserine lactone efflux protein n=3 T... [more]
A0A222DZ00_9RHOB1.890e-8699.25Type-4 uracil-DNA glycosylase n=3 Tax=Roseobactera... [more]
UPI001C47A6471.630e-8589.86LysE family translocator n=1 Tax=Roseobacteraceae ... [more]
A0A0B3S209_9RHOB1.240e-8288.51Threonine transporter RhtB n=4 Tax=Mameliella TaxI... [more]
A0A239BL69_9RHOB5.800e-7991.73Type-4 uracil-DNA glycosylase n=2 Tax=Antarctobact... [more]
UPI000EF43D567.180e-7781.08LysE family translocator n=1 Tax=Tropicibacter sp.... [more]
A0A238K4G4_9RHOB7.770e-7586.47Type-4 uracil-DNA glycosylase n=1 Tax=Maliponia aq... [more]
A0A238K494_9RHOB3.830e-7480.41Homoserine/homoserine lactone efflux protein n=1 T... [more]
A3JXS0_9RHOB6.200e-7480.27Transmembrane amino acid efflux protein n=3 Tax=Sa... [more]
A0A0B3RXZ6_9RHOB7.120e-7486.47Type-4 uracil-DNA glycosylase n=6 Tax=Roseobactera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9943contigC-australica_Contig_9943:3..847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog388399.SSE37_19912
PFAMsLysE
Model size845
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.07e-76
EggNOG OGsCOG1280@1|root,COG1280@2|Bacteria,1MWA1@1224|Proteobacteria,2TVFG@28211|Alphaproteobacteria
DescriptionLysine exporter protein (LYSE YGGA)
Cds size444
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588862.65222-CDS-C-australica_Contig_9943:2..4461682588862.65222-CDS-C-australica_Contig_9943:2..446Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9943 3..446 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588862.6652591-UTR-C-australica_Contig_9943:446..8471682588862.6652591-UTR-C-australica_Contig_9943:446..847Chrysoparadoxa australica CS_1217UTRC-australica_Contig_9943 447..847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9943.1.1prot_C-australica_Contig_9943.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9943 3..446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9943.1.1

>prot_C-australica_Contig_9943.1.1 ID=prot_C-australica_Contig_9943.1.1|Name=mRNA_C-australica_Contig_9943.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=148bp
MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVAL
GGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGS
DAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI
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mRNA from alignment at C-australica_Contig_9943:3..847-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9943.1.1 ID=mRNA_C-australica_Contig_9943.1.1|Name=mRNA_C-australica_Contig_9943.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=845bp|location=Sequence derived from alignment at C-australica_Contig_9943:3..847- (Chrysoparadoxa australica CS_1217)
CAAGGCAAGCCGTTTGTCGGGCGGGCGGGGCAGTTGCTGGACCGGATGCT GGCAGCGGTGGGCCTGAGCCGGGTCGACTCGGTCTACATCACCAATGTTC TGCCGTGGCGACCGCCGCAGAACCGCGATCCCAAACCGGATGAGATTGCC ATGCTGATTCCGTTCCTCCAGCGGCATATCGCTTTGGTCAATCCGGATGT GCTGGTGATCATGGGCAACACTTCGGCGCAGGCCTTGTTGGGGCGGCGCG GCATCACCCGGTTGCGCGGCCAGTGGCAAGAGGCGGCAGGGCGACCCGCG TTGCCGATGTTGCATCCTGCCTATCTGTTGCGCACGCCGGGGGCCAAACG TGAGGCCTGGGCCGACCTGCTGGCGTTGCAGGCGAAATTGAGGACGTTGA CATGATCGTCGATCCCATCCTGTTGCTGGCGTTCATACCTGTCGGTCTGG CGCTGAACGTCACACCCGGCCCGGACATGATGTTTTGTCTGGCGCAAGGG TTGCGGGGGGGCGCGCGTTGTGGCTGGGCCGCCTCTGCCGGTGTTGCGCT GGGCGGCATGGTGCATGTCCTGCTGGCTGGGCTTGGGCTGGGCGCGCGGG TCGCGGCATTGCCGGGAGCCTTTGATGTGATCCGGTGGGGCGGGGCGGCC TATCTGGCATGGATCGCGTGGAAGACGTTGCGAACCCCCATCGCGGGCAG CGACGCCCCCATGATGGTGCCTGCCAAGGCTGCAAAGCAGGGGTTTGTGG TCAACATTACCAATCCCAAGTTCATCCTTATCGTGCTGGCCTTTGTGCCC CAGTTCATTGACCCCACATTTCCGGTCCTGCCGCAGTTCCTGATA
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Coding sequence (CDS) from alignment at C-australica_Contig_9943:3..847-

>mRNA_C-australica_Contig_9943.1.1 ID=mRNA_C-australica_Contig_9943.1.1|Name=mRNA_C-australica_Contig_9943.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=444bp|location=Sequence derived from alignment at C-australica_Contig_9943:3..847- (Chrysoparadoxa australica CS_1217)
ATGATCGTCGATCCCATCCTGTTGCTGGCGTTCATACCTGTCGGTCTGGC
GCTGAACGTCACACCCGGCCCGGACATGATGTTTTGTCTGGCGCAAGGGT
TGCGGGGGGGCGCGCGTTGTGGCTGGGCCGCCTCTGCCGGTGTTGCGCTG
GGCGGCATGGTGCATGTCCTGCTGGCTGGGCTTGGGCTGGGCGCGCGGGT
CGCGGCATTGCCGGGAGCCTTTGATGTGATCCGGTGGGGCGGGGCGGCCT
ATCTGGCATGGATCGCGTGGAAGACGTTGCGAACCCCCATCGCGGGCAGC
GACGCCCCCATGATGGTGCCTGCCAAGGCTGCAAAGCAGGGGTTTGTGGT
CAACATTACCAATCCCAAGTTCATCCTTATCGTGCTGGCCTTTGTGCCCC
AGTTCATTGACCCCACATTTCCGGTCCTGCCGCAGTTCCTGATA
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