mRNA_C-australica_Contig_99.9.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_99.9.2
Unique NamemRNA_C-australica_Contig_99.9.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_99.9.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_99contigC-australica_Contig_99:27318..32547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2092
Hectar predicted targeting categoryother localisation
Exons18
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_005500.1
Cds size1782
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_99.9.2prot_C-australica_Contig_99.9.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_99 27399..32318 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588855.7486992-UTR-C-australica_Contig_99:27317..273981682588855.7486992-UTR-C-australica_Contig_99:27317..27398Chrysoparadoxa australica CS_1217UTRC-australica_Contig_99 27318..27398 +
1682588855.911274-UTR-C-australica_Contig_99:32318..325471682588855.911274-UTR-C-australica_Contig_99:32318..32547Chrysoparadoxa australica CS_1217UTRC-australica_Contig_99 32319..32547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588855.7579455-CDS-C-australica_Contig_99:27398..274791682588855.7579455-CDS-C-australica_Contig_99:27398..27479Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 27399..27479 +
1682588855.7665253-CDS-C-australica_Contig_99:27593..276711682588855.7665253-CDS-C-australica_Contig_99:27593..27671Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 27594..27671 +
1682588855.7753303-CDS-C-australica_Contig_99:27848..279431682588855.7753303-CDS-C-australica_Contig_99:27848..27943Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 27849..27943 +
1682588855.7845447-CDS-C-australica_Contig_99:28129..282221682588855.7845447-CDS-C-australica_Contig_99:28129..28222Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 28130..28222 +
1682588855.7960477-CDS-C-australica_Contig_99:28416..285071682588855.7960477-CDS-C-australica_Contig_99:28416..28507Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 28417..28507 +
1682588855.8041787-CDS-C-australica_Contig_99:28633..287681682588855.8041787-CDS-C-australica_Contig_99:28633..28768Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 28634..28768 +
1682588855.8120527-CDS-C-australica_Contig_99:28897..290141682588855.8120527-CDS-C-australica_Contig_99:28897..29014Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 28898..29014 +
1682588855.819781-CDS-C-australica_Contig_99:29233..293271682588855.819781-CDS-C-australica_Contig_99:29233..29327Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 29234..29327 +
1682588855.8277228-CDS-C-australica_Contig_99:29477..296081682588855.8277228-CDS-C-australica_Contig_99:29477..29608Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 29478..29608 +
1682588855.8361578-CDS-C-australica_Contig_99:29786..298461682588855.8361578-CDS-C-australica_Contig_99:29786..29846Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 29787..29846 +
1682588855.8440318-CDS-C-australica_Contig_99:29939..300171682588855.8440318-CDS-C-australica_Contig_99:29939..30017Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 29940..30017 +
1682588855.8517787-CDS-C-australica_Contig_99:30317..305441682588855.8517787-CDS-C-australica_Contig_99:30317..30544Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 30318..30544 +
1682588855.859533-CDS-C-australica_Contig_99:30876..309681682588855.859533-CDS-C-australica_Contig_99:30876..30968Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 30877..30968 +
1682588855.867382-CDS-C-australica_Contig_99:31267..313161682588855.867382-CDS-C-australica_Contig_99:31267..31316Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 31268..31316 +
1682588855.87512-CDS-C-australica_Contig_99:31437..314951682588855.87512-CDS-C-australica_Contig_99:31437..31495Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 31438..31495 +
1682588855.8827443-CDS-C-australica_Contig_99:31688..317691682588855.8827443-CDS-C-australica_Contig_99:31688..31769Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 31689..31769 +
1682588855.895827-CDS-C-australica_Contig_99:32025..320671682588855.895827-CDS-C-australica_Contig_99:32025..32067Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 32026..32067 +
1682588855.9037197-CDS-C-australica_Contig_99:32138..323181682588855.9037197-CDS-C-australica_Contig_99:32138..32318Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 32139..32318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_99.9.2

>prot_C-australica_Contig_99.9.2 ID=prot_C-australica_Contig_99.9.2|Name=mRNA_C-australica_Contig_99.9.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=594bp
MDNFIELVEGEEIVAEAVHDLVEGAAEEVRLKSLNDLAAPFAALKALEQA
FNLVDWGLLSHDTPDTVGELKEPPLPPPEIDTWARSHVPLRCQPCELLDM
SVSSPKAPSESGQSRRSLSSKNRRQQPPSGNSTSGPRSHSRKKSSLDHVP
LIELGNSEQQYYAGGGGRPGPEHNTAPAACEELDSLTQKAKFEEQLAAKL
EEEELAVKMKVESLRKELKNQEWTWDDDGEVLVITRLSGDKLKKVYVDVP
AEVKQEPVPKKAGRQKQNKGKASETKEAKEVRHSKAEAPLEVMRTPTAET
EKYFQMDVSCQPSLLDGNCMQLEEGVDIHENGSVKTGPSPRKDPNRMTRK
QYETLASSPMSQVCPSVGGSSLHPSVHAFPLGEGLTPNATPRVASASAAA
AVGPRAATPGTPALSVETFDLLADGARQEDPVTCSDEDDLESCPIWQQFQ
SGEARSPGTNRPVPPPLARKPGSRERHEVREQRIGPRDRGNPENICPTAL
KKRLPQPPPGATMGHGLMPKATTAGASDEALTLPSIDHKGNSGSNRDSEP
GNLLVEPHARHAAAGGGGSVQPRKSERTIKHLLGETLLQGRSG*
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mRNA from alignment at C-australica_Contig_99:27318..32547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_99.9.2 ID=mRNA_C-australica_Contig_99.9.2|Name=mRNA_C-australica_Contig_99.9.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=5230bp|location=Sequence derived from alignment at C-australica_Contig_99:27318..32547+ (Chrysoparadoxa australica CS_1217)
AGAACCTCGGGGTTGACACTGATGCTACCATGGGAGGAGAAGGGGAGCTG
ACGCGCCTGAGTAGGCCTAAGGACTGGCAGCATGGACAACTTTATCGAAC
TGGTTGAGGGAGAAGAAATAGTGGCAGAGGCAGTGCATGATCTGGTAGAA
GGAGCTGCTGAGGTGAGCCAAGACGCAGAGCCCTTTGACCTTAGTGCCTG
AAGCTTCTTCTTTTAACTCTCACTCTCTCTCTCCTCCGGGTGCATTCCCA
CATCATTCACTCCCCATCCCCAACAGGAGGTGCGGTTAAAGAGCCTGAAT
GATCTTGCAGCCCCATTTGCTGCCCTAAAGGCCCTGGAGCAAGCCTTCAA
TCTGGTACTCCGTTGTCACCCTGCTCCCTGCACCAGCTACACTAGCTTCC
ATGATACTAGCTTGTCACCTGGTTACAACTACTGTTAGCTCACCAAATTA
CCAACTCCAACCCCACGGCCTCTGACCTTGGATTGATATTGGCACTGACA
CTGACACTGACACTGACACTGTAACCATCAGGTGGACTGGGGTCTTCTCT
CGCACGACACACCGGACACTGTGGGAGAGCTGAAAGAGCCTCCATTACCC
CCCCCTGAGATTGATACTTGGGCCAGGTACAGCTTAAGCAGCTAGCATGC
TAGCAGTGTGTGCTGTCTTGTCTCATTTCACGCAAACGCTGTCTGCTGTC
AAGGTCACTACTTCCGCACCTCACCTGTTGGCACCCTAGTGGTACCCTAG
TAGTACCCTAGTAACAGTGTAATGTAACATAATAGCTGAACTATCCCCGC
CTACCCCACCAGATCCCATGTGCCGCTCCGATGCCAGCCCTGTGAGCTCC
TGGATATGAGTGTGAGCAGCCCCAAGGCCCCTAGCGAGAGCGGTCAATCT
AGGAGGTGAATGCATCCTTTCAAGACAGCATCAGCACGCCATGCATGTCA
AGCTGCTAAGGCTTACATTTGTTGGATCATGCCATCAGGGGCCAACTCTG
AACCTTATACCCGAGCATGGCTCTATAGCATAGCTCTATGGCATAGCTCT
CTTAACTGACCCTGGCCATACCATTCCAACTGCATCGATCCCATGTTAGA
TCTCTAAGTAGCAAAAATAGAAGACAGCAGCCGCCATCAGGCAACAGCAC
TTCTGGCCCCCGCTCTCACTCTCGCAAGAAGTCTTCGTTGGTATGAGTAA
GAACCACCGTCGTTTAGATGCTAGGCTCTTCTACAAATCGATGCTCCTGG
TCCAGAACTGTTCTACTTTTTCCCACGCCTCTCTGATCACCACCCCATAT
CCCTCCCATCTCACAGGATCACGTCCCACTGATAGAGCTGGGCAATTCAG
AGCAGCAGTACTATGCTGGTGGGGGGGGTAGGCCCGGTCCTGAGCATAAC
ACGGCTCCTGCTGCCTGCGAAGAGCTCGATTCACTCACTCAGAAAGCCAA
GGTGCGAGACGTTTTGAATTTTGAACTTTGAATAGTGAAACAAAGATGAG
TTGAGCGCCCCGGGAATGAAATATTGGTGTGCGTTTGTCTCCACTGACCT
GACCCGCATGCCCTCAACATGATTCAATAGTTTGAGGAGCAGCTGGCAGC
AAAGCTAGAGGAAGAGGAGCTGGCTGTGAAGATGAAGGTGGAATCCTTGC
GCAAGGAGCTCAAGAACCAGGAATGGACATGGGATGATGACGGGGAGGTA
GGTGTGGCTTTTCTCGCAAGCTCATCATTATCTAACTGACCCCATCCCAG
CCCAATAAGCTAAGCCAATAAGCAACGCTGGAGGCCATTGCGGCAGCATG
CCTTTGCCCTTCCACAATATCTCCTTTAAGAAGTATTTGGCCTGGGTCTG
AGACATGCGCCACAGGTTATTGACTGCCCTTCCCCTGTGCTCATCAACAC
GAACACTTCAACACAGGTGCTTGTCATCACGAGGCTAAGCGGTGATAAGC
TGAAGAAGGTCTACGTTGATGTACCAGCTGAAGTCAAACAAGAGCCCGTT
CCGAAAAAGGGTAAGAAACAGCATCCTTTGAGGGAGGGGCCATGCCACAG
GCTTTCAAATAATGCACCCGATTGTGTTATTGAAGGAAACCCTTGCCAGG
CCAACCACACACAGCCCACTGTGATTCTCACTTATAAGCTCCCATTCACC
TACTATGCAGCTGGGAGGCAAAAGCAAAATAAGGGAAAAGCTTCTGAGAC
CAAGGAGGCCAAAGAGGTCAGACACAGCAAGGCGGAGGCACCCCTGGAGG
TCATGAGAACCCCAACAGCGGAGACTGAGAAGTACTTTCAGGTGTGTTAC
ACCAGAGGCTCTGCTGCAGAGCTCTAGAGACAAAGAAATATGCTAACCCT
AGGGCGTGCCTGCCTCGCTTGTCACACCTTTAAATCTAATACTCATATAA
TATGACTAATGCTTTTACTCCCCGTTTGCCACTCCTTCCCCCATGCTAAC
ACTTGCCACGTTCAACCAGATGGATGTATCATGCCAGCCAAGCTTGCTTG
ACGGCAACTGCATGCAGCTTGAGGAAGGGGTAACCAACCAAAGCACTGGA
AGCCTAGCCTTCATTCCCTCTGTCTTACCTTGCTCATTATACCTGGTCTG
CTCTCTCCATCTACACCAAAAGGTTGACATTCATGAGAATGGCAGTGTCA
AGACCGGTCCCAGCCCGCGGAAAGATCCCAACAGAATGACAAGGAAGCAG
GTAATGCAGCAGTTGCAGTTGCAGTTGCAGTTGCAGTAGCAGTTGCAATA
GGCTACAAAGCAGCGGGCAGCAGGCCCTCAAATATCAACAAGTAACAACA
CCTACCCCCCCCCCATGTGCAAGGCAGCGGGTTGGGCTCAAGCCTTAAAG
TTGCAACTTTCTCTCGCTCTCGCTCTCTCTCTCTGTTGTAACCAGCTTTA
ACACAGAATAGGACAAGCTGACTTGACACAGTCTGCGCCCTTACCCTTTT
CCCCCCCTTTCTGCGCTTTTTGCCACTGTGCCACTGTGCCACTGTGCCAG
TACGAAACACTGGCATCAAGCCCCATGTCACAGGTCTGCCCAAGTGTGGG
GGGAAGCTCTCTTCATCCCAGCGTGCATGCCTTCCCGCTTGGAGAGGGGT
TGACTCCTAATGCCACCCCACGGGTGGCCTCAGCCTCAGCTGCCGCAGCT
GTGGGGCCAAGAGCTGCTACCCCGGGCACTCCAGCCCTCTCTGTGGAGAC
GTTTGATCTGCTTGCTGATGGAGCGAGGTGAGACTAAGAGTTCTCTAGCT
TGAGAGTTCGATTCAGAGTTGGTGAGAGTCAGGATGAGAGGGTCTCACAG
GCAGAAAGACTTGAGGCTGGAGGGAAGGTTTGTTTTGAGGGAGTGATGTG
TTGACTATCACAACCTCTTGGCTGTGTTGGGCTTCGGGGAAGGTGGTGCT
CCCACTCTCACCTGCCCAACCTCTCCCTAATCTTCAGTCAAGAGGTTGGT
GTAGGGTGTTGAATGTGTGAGACTGACTGTTTGTTGCCTTTTTCCTTTAA
GCCAGCTAAATTGACTAAATTGACCCTCCGCTTGCTGTCTGCCTTGTCGG
CCCACACAGGCAGGAGGACCCTGTTACCTGTAGCGATGAAGATGACCTGG
AGAGTTGTCCCATATGGCAGCAGTTCCAATCAGGTGAAGCACGGAGCCCA
GGTATGAAGAGATATGAAAAGATACCATTGGGACTAGTAAAACTAGTTTC
TTTAATCTTGCAAGCCAAACCCTTAACTGAAACACCTCAGGCTGACTCAA
CCCTTTGGACTATTGCCACTTCAACTTGCTCTGCCTGTGACTCTACTGCC
TGATGGCTAGGGCAAAACCTAGCAGACCGTTGACATCGCCTGGCTGCAAG
CCTTTCCTTACTAACCATCCCAGCTACATGTTGAACCTTATCCTCACCTT
CAGCCTCAGCCTCAGCCTCAACCTCAATCTTACCTTATGGTCTTGCTCAG
GCACCAATAGGCCAGTGCCGCCTCCATTGGCTCGCAAGCCTGGTTCAAGG
TGAGGTCAATTCCACCTTTTTCAAACTGCCAGATGATTACACACTGCCTT
CAGACACAGCCTTGAGGTTTCTGTTTTACCATTTTGACCCTCTTATCCCA
CTGATGCTATGCATGCACAGAGAAAGGCATGAAGTCCGAGAGCAACGCAT
TGGCCCACGAGACAGAGGGAACCCAGAGGTGAAATAAATGAATGGATGCC
AAATGATGATTGAACCAACAAGCACGAGCTGAGGAGCACACAGCCCAGAT
CAGTCATAGTGACCGCACCAACACACACGTACCAGCTCTACCCTTGGGTT
TAGCAACGTCATAATGTCCTTCACTGGTCCAAACTGCCACCATGCTCTCA
CTCATCTCACCATGTCTTCAGAACATCTGCCCGACTGCTCTCAAGAAGCG
CTTGCCACAGCCCCCTCCTGGAGCTACTATGGGTCATGGCCTAATGCCCA
AAGTGAGTAGAGGCAGCGAACGCTTCCACCTCACCAACCCAGCTGCTCAA
CTGCTCACATCTGCATTCATGCTGAGACACCCCAATGAACCAAAGCAGAT
TATATATGCTATGATATATGACTTGCCTGTGCCTTCTCCTCCTGCTGCTG
TGAAAAGGGTCACACTCACTCACTCACTCACTCACATAGCCTGCAGTGTT
TACCCTCCCTCACTTGCCTCCCTTCACCTCTCTTCTTCACCTCTCACTGA
TGATTCAGGCAACCACAGCCGGCGCGTCAGATGAAGCCCTCACACTTCCG
GTACTGCCAGCGGCCCAACTTGTTCCTTGTTGACTCAGTCTACTCACCGT
ACAACGTGTAACCCCCCTCAGAGTATAGACCACAAGGGTAACAGCGGCAG
TAATCGTGATAGTGAGCCAGGAAACCTGCTGGTGGAGCCCCACGCACGCC
ACGCAGCAGCTGGGGGAGGTGGCAGTGTACAGCCACGCAAGAGTGAGCGA
ACGATAAAGCACTTGCTGGGGGAGACACTGCTGCAGGGCCGGTCTGGTTG
ACCGCGTTCGACTGCTCTGCTTATGCCAGTGGAAGCCTGGTCGAAGCCTG
GCCCTCCTATCAATCTATCAATGATCGAGCTCCTGCTTGCTGGCACTTCT
TTCGGCTTGCTCTGCCTGCCTTTATCTGGTTTTAGTTCTTGCTGCACAGC
AGTGTATGGGGAATGAGCATCTGAACAGAGTTCGAATCAGTTTGCCTATA
TGGAGGACTGCGTTTATTGCTTCCCTTGAC
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Coding sequence (CDS) from alignment at C-australica_Contig_99:27318..32547+

>mRNA_C-australica_Contig_99.9.2 ID=mRNA_C-australica_Contig_99.9.2|Name=mRNA_C-australica_Contig_99.9.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1782bp|location=Sequence derived from alignment at C-australica_Contig_99:27318..32547+ (Chrysoparadoxa australica CS_1217)
ATGGACAACTTTATCGAACTGGTTGAGGGAGAAGAAATAGTGGCAGAGGC
AGTGCATGATCTGGTAGAAGGAGCTGCTGAGGAGGTGCGGTTAAAGAGCC
TGAATGATCTTGCAGCCCCATTTGCTGCCCTAAAGGCCCTGGAGCAAGCC
TTCAATCTGGTGGACTGGGGTCTTCTCTCGCACGACACACCGGACACTGT
GGGAGAGCTGAAAGAGCCTCCATTACCCCCCCCTGAGATTGATACTTGGG
CCAGATCCCATGTGCCGCTCCGATGCCAGCCCTGTGAGCTCCTGGATATG
AGTGTGAGCAGCCCCAAGGCCCCTAGCGAGAGCGGTCAATCTAGGAGATC
TCTAAGTAGCAAAAATAGAAGACAGCAGCCGCCATCAGGCAACAGCACTT
CTGGCCCCCGCTCTCACTCTCGCAAGAAGTCTTCGTTGGATCACGTCCCA
CTGATAGAGCTGGGCAATTCAGAGCAGCAGTACTATGCTGGTGGGGGGGG
TAGGCCCGGTCCTGAGCATAACACGGCTCCTGCTGCCTGCGAAGAGCTCG
ATTCACTCACTCAGAAAGCCAAGTTTGAGGAGCAGCTGGCAGCAAAGCTA
GAGGAAGAGGAGCTGGCTGTGAAGATGAAGGTGGAATCCTTGCGCAAGGA
GCTCAAGAACCAGGAATGGACATGGGATGATGACGGGGAGGTGCTTGTCA
TCACGAGGCTAAGCGGTGATAAGCTGAAGAAGGTCTACGTTGATGTACCA
GCTGAAGTCAAACAAGAGCCCGTTCCGAAAAAGGCTGGGAGGCAAAAGCA
AAATAAGGGAAAAGCTTCTGAGACCAAGGAGGCCAAAGAGGTCAGACACA
GCAAGGCGGAGGCACCCCTGGAGGTCATGAGAACCCCAACAGCGGAGACT
GAGAAGTACTTTCAGATGGATGTATCATGCCAGCCAAGCTTGCTTGACGG
CAACTGCATGCAGCTTGAGGAAGGGGTTGACATTCATGAGAATGGCAGTG
TCAAGACCGGTCCCAGCCCGCGGAAAGATCCCAACAGAATGACAAGGAAG
CAGTACGAAACACTGGCATCAAGCCCCATGTCACAGGTCTGCCCAAGTGT
GGGGGGAAGCTCTCTTCATCCCAGCGTGCATGCCTTCCCGCTTGGAGAGG
GGTTGACTCCTAATGCCACCCCACGGGTGGCCTCAGCCTCAGCTGCCGCA
GCTGTGGGGCCAAGAGCTGCTACCCCGGGCACTCCAGCCCTCTCTGTGGA
GACGTTTGATCTGCTTGCTGATGGAGCGAGGCAGGAGGACCCTGTTACCT
GTAGCGATGAAGATGACCTGGAGAGTTGTCCCATATGGCAGCAGTTCCAA
TCAGGTGAAGCACGGAGCCCAGGCACCAATAGGCCAGTGCCGCCTCCATT
GGCTCGCAAGCCTGGTTCAAGAGAAAGGCATGAAGTCCGAGAGCAACGCA
TTGGCCCACGAGACAGAGGGAACCCAGAGAACATCTGCCCGACTGCTCTC
AAGAAGCGCTTGCCACAGCCCCCTCCTGGAGCTACTATGGGTCATGGCCT
AATGCCCAAAGCAACCACAGCCGGCGCGTCAGATGAAGCCCTCACACTTC
CGAGTATAGACCACAAGGGTAACAGCGGCAGTAATCGTGATAGTGAGCCA
GGAAACCTGCTGGTGGAGCCCCACGCACGCCACGCAGCAGCTGGGGGAGG
TGGCAGTGTACAGCCACGCAAGAGTGAGCGAACGATAAAGCACTTGCTGG
GGGAGACACTGCTGCAGGGCCGGTCTGGTTGA
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