mRNA_C-australica_Contig_99.9.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Stop	1
Start	1
Model size	2092
Hectar predicted targeting category	other localisation
Exons	18
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-08_005500.1
Cds size	1782

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-australica_Contig_99.9.2	prot_C-australica_Contig_99.9.2	Chrysoparadoxa australica CS_1217	polypeptide	C-australica_Contig_99 27399..32318 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682588855.7486992-UTR-C-australica_Contig_99:27317..27398	1682588855.7486992-UTR-C-australica_Contig_99:27317..27398	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_99 27318..27398 +
1682588855.911274-UTR-C-australica_Contig_99:32318..32547	1682588855.911274-UTR-C-australica_Contig_99:32318..32547	Chrysoparadoxa australica CS_1217	UTR	C-australica_Contig_99 32319..32547 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-australica_Contig_99:27318..32547+
coding sequence from alignment at C-australica_Contig_99:27318..32547+

protein sequence of mRNA_C-australica_Contig_99.9.2

>prot_C-australica_Contig_99.9.2 ID=prot_C-australica_Contig_99.9.2|Name=mRNA_C-australica_Contig_99.9.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=594bp
MDNFIELVEGEEIVAEAVHDLVEGAAEEVRLKSLNDLAAPFAALKALEQA
FNLVDWGLLSHDTPDTVGELKEPPLPPPEIDTWARSHVPLRCQPCELLDM
SVSSPKAPSESGQSRRSLSSKNRRQQPPSGNSTSGPRSHSRKKSSLDHVP
LIELGNSEQQYYAGGGGRPGPEHNTAPAACEELDSLTQKAKFEEQLAAKL
EEEELAVKMKVESLRKELKNQEWTWDDDGEVLVITRLSGDKLKKVYVDVP
AEVKQEPVPKKAGRQKQNKGKASETKEAKEVRHSKAEAPLEVMRTPTAET
EKYFQMDVSCQPSLLDGNCMQLEEGVDIHENGSVKTGPSPRKDPNRMTRK
QYETLASSPMSQVCPSVGGSSLHPSVHAFPLGEGLTPNATPRVASASAAA
AVGPRAATPGTPALSVETFDLLADGARQEDPVTCSDEDDLESCPIWQQFQ
SGEARSPGTNRPVPPPLARKPGSRERHEVREQRIGPRDRGNPENICPTAL
KKRLPQPPPGATMGHGLMPKATTAGASDEALTLPSIDHKGNSGSNRDSEP
GNLLVEPHARHAAAGGGGSVQPRKSERTIKHLLGETLLQGRSG*

mRNA from alignment at C-australica_Contig_99:27318..32547+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-australica_Contig_99.9.2 ID=mRNA_C-australica_Contig_99.9.2|Name=mRNA_C-australica_Contig_99.9.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=5230bp|location=Sequence derived from alignment at C-australica_Contig_99:27318..32547+ (Chrysoparadoxa australica CS_1217)
AGAACCTCGGGGTTGACACTGATGCTACCATGGGAGGAGAAGGGGAGCTG
ACGCGCCTGAGTAGGCCTAAGGACTGGCAGCATGGACAACTTTATCGAAC
TGGTTGAGGGAGAAGAAATAGTGGCAGAGGCAGTGCATGATCTGGTAGAA
GGAGCTGCTGAGGTGAGCCAAGACGCAGAGCCCTTTGACCTTAGTGCCTG
AAGCTTCTTCTTTTAACTCTCACTCTCTCTCTCCTCCGGGTGCATTCCCA
CATCATTCACTCCCCATCCCCAACAGGAGGTGCGGTTAAAGAGCCTGAAT
GATCTTGCAGCCCCATTTGCTGCCCTAAAGGCCCTGGAGCAAGCCTTCAA
TCTGGTACTCCGTTGTCACCCTGCTCCCTGCACCAGCTACACTAGCTTCC
ATGATACTAGCTTGTCACCTGGTTACAACTACTGTTAGCTCACCAAATTA
CCAACTCCAACCCCACGGCCTCTGACCTTGGATTGATATTGGCACTGACA
CTGACACTGACACTGACACTGTAACCATCAGGTGGACTGGGGTCTTCTCT
CGCACGACACACCGGACACTGTGGGAGAGCTGAAAGAGCCTCCATTACCC
CCCCCTGAGATTGATACTTGGGCCAGGTACAGCTTAAGCAGCTAGCATGC
TAGCAGTGTGTGCTGTCTTGTCTCATTTCACGCAAACGCTGTCTGCTGTC
AAGGTCACTACTTCCGCACCTCACCTGTTGGCACCCTAGTGGTACCCTAG
TAGTACCCTAGTAACAGTGTAATGTAACATAATAGCTGAACTATCCCCGC
CTACCCCACCAGATCCCATGTGCCGCTCCGATGCCAGCCCTGTGAGCTCC
TGGATATGAGTGTGAGCAGCCCCAAGGCCCCTAGCGAGAGCGGTCAATCT
AGGAGGTGAATGCATCCTTTCAAGACAGCATCAGCACGCCATGCATGTCA
AGCTGCTAAGGCTTACATTTGTTGGATCATGCCATCAGGGGCCAACTCTG
AACCTTATACCCGAGCATGGCTCTATAGCATAGCTCTATGGCATAGCTCT
CTTAACTGACCCTGGCCATACCATTCCAACTGCATCGATCCCATGTTAGA
TCTCTAAGTAGCAAAAATAGAAGACAGCAGCCGCCATCAGGCAACAGCAC
TTCTGGCCCCCGCTCTCACTCTCGCAAGAAGTCTTCGTTGGTATGAGTAA
GAACCACCGTCGTTTAGATGCTAGGCTCTTCTACAAATCGATGCTCCTGG
TCCAGAACTGTTCTACTTTTTCCCACGCCTCTCTGATCACCACCCCATAT
CCCTCCCATCTCACAGGATCACGTCCCACTGATAGAGCTGGGCAATTCAG
AGCAGCAGTACTATGCTGGTGGGGGGGGTAGGCCCGGTCCTGAGCATAAC
ACGGCTCCTGCTGCCTGCGAAGAGCTCGATTCACTCACTCAGAAAGCCAA
GGTGCGAGACGTTTTGAATTTTGAACTTTGAATAGTGAAACAAAGATGAG
TTGAGCGCCCCGGGAATGAAATATTGGTGTGCGTTTGTCTCCACTGACCT
GACCCGCATGCCCTCAACATGATTCAATAGTTTGAGGAGCAGCTGGCAGC
AAAGCTAGAGGAAGAGGAGCTGGCTGTGAAGATGAAGGTGGAATCCTTGC
GCAAGGAGCTCAAGAACCAGGAATGGACATGGGATGATGACGGGGAGGTA
GGTGTGGCTTTTCTCGCAAGCTCATCATTATCTAACTGACCCCATCCCAG
CCCAATAAGCTAAGCCAATAAGCAACGCTGGAGGCCATTGCGGCAGCATG
CCTTTGCCCTTCCACAATATCTCCTTTAAGAAGTATTTGGCCTGGGTCTG
AGACATGCGCCACAGGTTATTGACTGCCCTTCCCCTGTGCTCATCAACAC
GAACACTTCAACACAGGTGCTTGTCATCACGAGGCTAAGCGGTGATAAGC
TGAAGAAGGTCTACGTTGATGTACCAGCTGAAGTCAAACAAGAGCCCGTT
CCGAAAAAGGGTAAGAAACAGCATCCTTTGAGGGAGGGGCCATGCCACAG
GCTTTCAAATAATGCACCCGATTGTGTTATTGAAGGAAACCCTTGCCAGG
CCAACCACACACAGCCCACTGTGATTCTCACTTATAAGCTCCCATTCACC
TACTATGCAGCTGGGAGGCAAAAGCAAAATAAGGGAAAAGCTTCTGAGAC
CAAGGAGGCCAAAGAGGTCAGACACAGCAAGGCGGAGGCACCCCTGGAGG
TCATGAGAACCCCAACAGCGGAGACTGAGAAGTACTTTCAGGTGTGTTAC
ACCAGAGGCTCTGCTGCAGAGCTCTAGAGACAAAGAAATATGCTAACCCT
AGGGCGTGCCTGCCTCGCTTGTCACACCTTTAAATCTAATACTCATATAA
TATGACTAATGCTTTTACTCCCCGTTTGCCACTCCTTCCCCCATGCTAAC
ACTTGCCACGTTCAACCAGATGGATGTATCATGCCAGCCAAGCTTGCTTG
ACGGCAACTGCATGCAGCTTGAGGAAGGGGTAACCAACCAAAGCACTGGA
AGCCTAGCCTTCATTCCCTCTGTCTTACCTTGCTCATTATACCTGGTCTG
CTCTCTCCATCTACACCAAAAGGTTGACATTCATGAGAATGGCAGTGTCA
AGACCGGTCCCAGCCCGCGGAAAGATCCCAACAGAATGACAAGGAAGCAG
GTAATGCAGCAGTTGCAGTTGCAGTTGCAGTTGCAGTAGCAGTTGCAATA
GGCTACAAAGCAGCGGGCAGCAGGCCCTCAAATATCAACAAGTAACAACA
CCTACCCCCCCCCCATGTGCAAGGCAGCGGGTTGGGCTCAAGCCTTAAAG
TTGCAACTTTCTCTCGCTCTCGCTCTCTCTCTCTGTTGTAACCAGCTTTA
ACACAGAATAGGACAAGCTGACTTGACACAGTCTGCGCCCTTACCCTTTT
CCCCCCCTTTCTGCGCTTTTTGCCACTGTGCCACTGTGCCACTGTGCCAG
TACGAAACACTGGCATCAAGCCCCATGTCACAGGTCTGCCCAAGTGTGGG
GGGAAGCTCTCTTCATCCCAGCGTGCATGCCTTCCCGCTTGGAGAGGGGT
TGACTCCTAATGCCACCCCACGGGTGGCCTCAGCCTCAGCTGCCGCAGCT
GTGGGGCCAAGAGCTGCTACCCCGGGCACTCCAGCCCTCTCTGTGGAGAC
GTTTGATCTGCTTGCTGATGGAGCGAGGTGAGACTAAGAGTTCTCTAGCT
TGAGAGTTCGATTCAGAGTTGGTGAGAGTCAGGATGAGAGGGTCTCACAG
GCAGAAAGACTTGAGGCTGGAGGGAAGGTTTGTTTTGAGGGAGTGATGTG
TTGACTATCACAACCTCTTGGCTGTGTTGGGCTTCGGGGAAGGTGGTGCT
CCCACTCTCACCTGCCCAACCTCTCCCTAATCTTCAGTCAAGAGGTTGGT
GTAGGGTGTTGAATGTGTGAGACTGACTGTTTGTTGCCTTTTTCCTTTAA
GCCAGCTAAATTGACTAAATTGACCCTCCGCTTGCTGTCTGCCTTGTCGG
CCCACACAGGCAGGAGGACCCTGTTACCTGTAGCGATGAAGATGACCTGG
AGAGTTGTCCCATATGGCAGCAGTTCCAATCAGGTGAAGCACGGAGCCCA
GGTATGAAGAGATATGAAAAGATACCATTGGGACTAGTAAAACTAGTTTC
TTTAATCTTGCAAGCCAAACCCTTAACTGAAACACCTCAGGCTGACTCAA
CCCTTTGGACTATTGCCACTTCAACTTGCTCTGCCTGTGACTCTACTGCC
TGATGGCTAGGGCAAAACCTAGCAGACCGTTGACATCGCCTGGCTGCAAG
CCTTTCCTTACTAACCATCCCAGCTACATGTTGAACCTTATCCTCACCTT
CAGCCTCAGCCTCAGCCTCAACCTCAATCTTACCTTATGGTCTTGCTCAG
GCACCAATAGGCCAGTGCCGCCTCCATTGGCTCGCAAGCCTGGTTCAAGG
TGAGGTCAATTCCACCTTTTTCAAACTGCCAGATGATTACACACTGCCTT
CAGACACAGCCTTGAGGTTTCTGTTTTACCATTTTGACCCTCTTATCCCA
CTGATGCTATGCATGCACAGAGAAAGGCATGAAGTCCGAGAGCAACGCAT
TGGCCCACGAGACAGAGGGAACCCAGAGGTGAAATAAATGAATGGATGCC
AAATGATGATTGAACCAACAAGCACGAGCTGAGGAGCACACAGCCCAGAT
CAGTCATAGTGACCGCACCAACACACACGTACCAGCTCTACCCTTGGGTT
TAGCAACGTCATAATGTCCTTCACTGGTCCAAACTGCCACCATGCTCTCA
CTCATCTCACCATGTCTTCAGAACATCTGCCCGACTGCTCTCAAGAAGCG
CTTGCCACAGCCCCCTCCTGGAGCTACTATGGGTCATGGCCTAATGCCCA
AAGTGAGTAGAGGCAGCGAACGCTTCCACCTCACCAACCCAGCTGCTCAA
CTGCTCACATCTGCATTCATGCTGAGACACCCCAATGAACCAAAGCAGAT
TATATATGCTATGATATATGACTTGCCTGTGCCTTCTCCTCCTGCTGCTG
TGAAAAGGGTCACACTCACTCACTCACTCACTCACATAGCCTGCAGTGTT
TACCCTCCCTCACTTGCCTCCCTTCACCTCTCTTCTTCACCTCTCACTGA
TGATTCAGGCAACCACAGCCGGCGCGTCAGATGAAGCCCTCACACTTCCG
GTACTGCCAGCGGCCCAACTTGTTCCTTGTTGACTCAGTCTACTCACCGT
ACAACGTGTAACCCCCCTCAGAGTATAGACCACAAGGGTAACAGCGGCAG
TAATCGTGATAGTGAGCCAGGAAACCTGCTGGTGGAGCCCCACGCACGCC
ACGCAGCAGCTGGGGGAGGTGGCAGTGTACAGCCACGCAAGAGTGAGCGA
ACGATAAAGCACTTGCTGGGGGAGACACTGCTGCAGGGCCGGTCTGGTTG
ACCGCGTTCGACTGCTCTGCTTATGCCAGTGGAAGCCTGGTCGAAGCCTG
GCCCTCCTATCAATCTATCAATGATCGAGCTCCTGCTTGCTGGCACTTCT
TTCGGCTTGCTCTGCCTGCCTTTATCTGGTTTTAGTTCTTGCTGCACAGC
AGTGTATGGGGAATGAGCATCTGAACAGAGTTCGAATCAGTTTGCCTATA
TGGAGGACTGCGTTTATTGCTTCCCTTGAC

Coding sequence (CDS) from alignment at C-australica_Contig_99:27318..32547+

>mRNA_C-australica_Contig_99.9.2 ID=mRNA_C-australica_Contig_99.9.2|Name=mRNA_C-australica_Contig_99.9.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1782bp|location=Sequence derived from alignment at C-australica_Contig_99:27318..32547+ (Chrysoparadoxa australica CS_1217)
ATGGACAACTTTATCGAACTGGTTGAGGGAGAAGAAATAGTGGCAGAGGC
AGTGCATGATCTGGTAGAAGGAGCTGCTGAGGAGGTGCGGTTAAAGAGCC
TGAATGATCTTGCAGCCCCATTTGCTGCCCTAAAGGCCCTGGAGCAAGCC
TTCAATCTGGTGGACTGGGGTCTTCTCTCGCACGACACACCGGACACTGT
GGGAGAGCTGAAAGAGCCTCCATTACCCCCCCCTGAGATTGATACTTGGG
CCAGATCCCATGTGCCGCTCCGATGCCAGCCCTGTGAGCTCCTGGATATG
AGTGTGAGCAGCCCCAAGGCCCCTAGCGAGAGCGGTCAATCTAGGAGATC
TCTAAGTAGCAAAAATAGAAGACAGCAGCCGCCATCAGGCAACAGCACTT
CTGGCCCCCGCTCTCACTCTCGCAAGAAGTCTTCGTTGGATCACGTCCCA
CTGATAGAGCTGGGCAATTCAGAGCAGCAGTACTATGCTGGTGGGGGGGG
TAGGCCCGGTCCTGAGCATAACACGGCTCCTGCTGCCTGCGAAGAGCTCG
ATTCACTCACTCAGAAAGCCAAGTTTGAGGAGCAGCTGGCAGCAAAGCTA
GAGGAAGAGGAGCTGGCTGTGAAGATGAAGGTGGAATCCTTGCGCAAGGA
GCTCAAGAACCAGGAATGGACATGGGATGATGACGGGGAGGTGCTTGTCA
TCACGAGGCTAAGCGGTGATAAGCTGAAGAAGGTCTACGTTGATGTACCA
GCTGAAGTCAAACAAGAGCCCGTTCCGAAAAAGGCTGGGAGGCAAAAGCA
AAATAAGGGAAAAGCTTCTGAGACCAAGGAGGCCAAAGAGGTCAGACACA
GCAAGGCGGAGGCACCCCTGGAGGTCATGAGAACCCCAACAGCGGAGACT
GAGAAGTACTTTCAGATGGATGTATCATGCCAGCCAAGCTTGCTTGACGG
CAACTGCATGCAGCTTGAGGAAGGGGTTGACATTCATGAGAATGGCAGTG
TCAAGACCGGTCCCAGCCCGCGGAAAGATCCCAACAGAATGACAAGGAAG
CAGTACGAAACACTGGCATCAAGCCCCATGTCACAGGTCTGCCCAAGTGT
GGGGGGAAGCTCTCTTCATCCCAGCGTGCATGCCTTCCCGCTTGGAGAGG
GGTTGACTCCTAATGCCACCCCACGGGTGGCCTCAGCCTCAGCTGCCGCA
GCTGTGGGGCCAAGAGCTGCTACCCCGGGCACTCCAGCCCTCTCTGTGGA
GACGTTTGATCTGCTTGCTGATGGAGCGAGGCAGGAGGACCCTGTTACCT
GTAGCGATGAAGATGACCTGGAGAGTTGTCCCATATGGCAGCAGTTCCAA
TCAGGTGAAGCACGGAGCCCAGGCACCAATAGGCCAGTGCCGCCTCCATT
GGCTCGCAAGCCTGGTTCAAGAGAAAGGCATGAAGTCCGAGAGCAACGCA
TTGGCCCACGAGACAGAGGGAACCCAGAGAACATCTGCCCGACTGCTCTC
AAGAAGCGCTTGCCACAGCCCCCTCCTGGAGCTACTATGGGTCATGGCCT
AATGCCCAAAGCAACCACAGCCGGCGCGTCAGATGAAGCCCTCACACTTC
CGAGTATAGACCACAAGGGTAACAGCGGCAGTAATCGTGATAGTGAGCCA
GGAAACCTGCTGGTGGAGCCCCACGCACGCCACGCAGCAGCTGGGGGAGG
TGGCAGTGTACAGCCACGCAAGAGTGAGCGAACGATAAAGCACTTGCTGG
GGGAGACACTGCTGCAGGGCCGGTCTGGTTGA

mRNA_C-australica_Contig_99.9.2 (mRNA) Chrysoparadoxa australica CS_1217

ZOOM

x 1

POSITION

0