Homology
BLAST of mRNA_C-australica_Contig_9887.1.1 vs. uniprot
Match:
A0A222E8Y6_9RHOB (Uncharacterized protein n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E8Y6_9RHOB)
HSP 1 Score: 188 bits (477), Expect = 1.510e-53
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 1
Query: 1 TPPPEAGLHRCTDAKGWDQILRVCRAALASRDWEDNDAAALHNAVGAAFFATGDAFAAHEAFQSALSLRPDTPVLLENRALALDALGQHADAALEMRAA 297
TPPP+AGLHRCTDAKGWDQILRVCRAALASRDWEDNDAAAL NA+GAAFFATGDAFAAHEAFQ+ALSLRP+TPVLLENRALALDALGQHADAALEMRAA
Sbjct: 268 TPPPQAGLHRCTDAKGWDQILRVCRAALASRDWEDNDAAALQNAIGAAFFATGDAFAAHEAFQAALSLRPETPVLLENRALALDALGQHADAALEMRAA 366
BLAST of mRNA_C-australica_Contig_9887.1.1 vs. uniprot
Match:
A0A239B6G8_9RHOB (Uncharacterized protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239B6G8_9RHOB)
HSP 1 Score: 166 bits (421), Expect = 7.180e-46
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 1
Query: 7 PPEAGLHRCTDAKGWDQILRVCRAALASRDWEDNDAAALHNAVGAAFFATGDAFAAHEAFQSALSLRPDTPVLLENRALALDALGQHADAALEMRAA 297
PP+ G RCTDA GWDQILRVCRAALA+RDW DN+AAAL NA+GAAF ATGDAFAAHEAFQ+AL+LRPDTPVLLENRALALDALGQHADAALEMRAA
Sbjct: 251 PPQDGSQRCTDADGWDQILRVCRAALAARDWGDNEAAALQNAIGAAFLATGDAFAAHEAFQAALALRPDTPVLLENRALALDALGQHADAALEMRAA 347
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9887.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.51e-53 / Id = 94.95 Expect = 7.18e-46 / Id = 86.60 Sequence A0A222E8Y6_9RHOB A0A239B6G8_9RHOB back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 297 Hectar predicted targeting category other localisation Exons 1 Cds size 297
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588854.8409834-CDS-C-australica_Contig_9887:555..852 1682588854.8409834-CDS-C-australica_Contig_9887:555..852 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_9887 556..852 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9887.1.1
>prot_C-australica_Contig_9887.1.1 ID=prot_C-australica_Contig_9887.1.1|Name=mRNA_C-australica_Contig_9887.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=99bp
TPPPEAGLHRCTDAKGWDQILRVCRAALASRDWEDNDAAALHNAVGAAFF back to top mRNA from alignment at C-australica_Contig_9887:556..852-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9887.1.1 ID=mRNA_C-australica_Contig_9887.1.1|Name=mRNA_C-australica_Contig_9887.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=297bp|location=Sequence derived from alignment at C-australica_Contig_9887:556..852- (Chrysoparadoxa australica CS_1217)ACTCCGCCGCCGGAGGCCGGGTTACATCGGTGTACCGATGCAAAGGGCTG
GGACCAGATCCTGCGTGTATGCCGGGCCGCGCTGGCCTCGCGCGACTGGG
AGGACAATGACGCAGCGGCGCTGCACAACGCCGTCGGGGCGGCGTTTTTC
GCCACCGGAGACGCCTTTGCCGCGCATGAGGCGTTTCAGTCCGCCCTGTC
ACTGCGCCCGGACACCCCGGTTTTGCTTGAAAACCGCGCGCTGGCGCTGG
ACGCCCTTGGGCAGCACGCGGATGCGGCGCTGGAAATGCGCGCCGCC back to top Coding sequence (CDS) from alignment at C-australica_Contig_9887:556..852-
>mRNA_C-australica_Contig_9887.1.1 ID=mRNA_C-australica_Contig_9887.1.1|Name=mRNA_C-australica_Contig_9887.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=297bp|location=Sequence derived from alignment at C-australica_Contig_9887:556..852- (Chrysoparadoxa australica CS_1217) back to top