mRNA_C-australica_Contig_9887.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9887.1.1
Unique NamemRNA_C-australica_Contig_9887.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_9887.1.1 vs. uniprot
Match: A0A222E8Y6_9RHOB (Uncharacterized protein n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E8Y6_9RHOB)

HSP 1 Score: 188 bits (477), Expect = 1.510e-53
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 TPPPEAGLHRCTDAKGWDQILRVCRAALASRDWEDNDAAALHNAVGAAFFATGDAFAAHEAFQSALSLRPDTPVLLENRALALDALGQHADAALEMRAA 297
            TPPP+AGLHRCTDAKGWDQILRVCRAALASRDWEDNDAAAL NA+GAAFFATGDAFAAHEAFQ+ALSLRP+TPVLLENRALALDALGQHADAALEMRAA
Sbjct:  268 TPPPQAGLHRCTDAKGWDQILRVCRAALASRDWEDNDAAALQNAIGAAFFATGDAFAAHEAFQAALSLRPETPVLLENRALALDALGQHADAALEMRAA 366
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BLAST of mRNA_C-australica_Contig_9887.1.1 vs. uniprot
Match: A0A239B6G8_9RHOB (Uncharacterized protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239B6G8_9RHOB)

HSP 1 Score: 166 bits (421), Expect = 7.180e-46
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    7 PPEAGLHRCTDAKGWDQILRVCRAALASRDWEDNDAAALHNAVGAAFFATGDAFAAHEAFQSALSLRPDTPVLLENRALALDALGQHADAALEMRAA 297
            PP+ G  RCTDA GWDQILRVCRAALA+RDW DN+AAAL NA+GAAF ATGDAFAAHEAFQ+AL+LRPDTPVLLENRALALDALGQHADAALEMRAA
Sbjct:  251 PPQDGSQRCTDADGWDQILRVCRAALAARDWGDNEAAALQNAIGAAFLATGDAFAAHEAFQAALALRPDTPVLLENRALALDALGQHADAALEMRAA 347
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9887.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A222E8Y6_9RHOB1.510e-5394.95Uncharacterized protein n=3 Tax=Roseobacteraceae T... [more]
A0A239B6G8_9RHOB7.180e-4686.60Uncharacterized protein n=1 Tax=Antarctobacter hel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9887contigC-australica_Contig_9887:556..852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size297
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588854.8409834-CDS-C-australica_Contig_9887:555..8521682588854.8409834-CDS-C-australica_Contig_9887:555..852Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9887 556..852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9887.1.1prot_C-australica_Contig_9887.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9887 556..852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9887.1.1

>prot_C-australica_Contig_9887.1.1 ID=prot_C-australica_Contig_9887.1.1|Name=mRNA_C-australica_Contig_9887.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=99bp
TPPPEAGLHRCTDAKGWDQILRVCRAALASRDWEDNDAAALHNAVGAAFF
ATGDAFAAHEAFQSALSLRPDTPVLLENRALALDALGQHADAALEMRAA
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mRNA from alignment at C-australica_Contig_9887:556..852-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9887.1.1 ID=mRNA_C-australica_Contig_9887.1.1|Name=mRNA_C-australica_Contig_9887.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=297bp|location=Sequence derived from alignment at C-australica_Contig_9887:556..852- (Chrysoparadoxa australica CS_1217)
ACTCCGCCGCCGGAGGCCGGGTTACATCGGTGTACCGATGCAAAGGGCTG
GGACCAGATCCTGCGTGTATGCCGGGCCGCGCTGGCCTCGCGCGACTGGG
AGGACAATGACGCAGCGGCGCTGCACAACGCCGTCGGGGCGGCGTTTTTC
GCCACCGGAGACGCCTTTGCCGCGCATGAGGCGTTTCAGTCCGCCCTGTC
ACTGCGCCCGGACACCCCGGTTTTGCTTGAAAACCGCGCGCTGGCGCTGG
ACGCCCTTGGGCAGCACGCGGATGCGGCGCTGGAAATGCGCGCCGCC
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Coding sequence (CDS) from alignment at C-australica_Contig_9887:556..852-

>mRNA_C-australica_Contig_9887.1.1 ID=mRNA_C-australica_Contig_9887.1.1|Name=mRNA_C-australica_Contig_9887.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=297bp|location=Sequence derived from alignment at C-australica_Contig_9887:556..852- (Chrysoparadoxa australica CS_1217)
ACTCCGCCGCCGGAGGCCGGGTTACATCGGTGTACCGATGCAAAGGGCTG
GGACCAGATCCTGCGTGTATGCCGGGCCGCGCTGGCCTCGCGCGACTGGG
AGGACAATGACGCAGCGGCGCTGCACAACGCCGTCGGGGCGGCGTTTTTC
GCCACCGGAGACGCCTTTGCCGCGCATGAGGCGTTTCAGTCCGCCCTGTC
ACTGCGCCCGGACACCCCGGTTTTGCTTGAAAACCGCGCGCTGGCGCTGG
ACGCCCTTGGGCAGCACGCGGATGCGGCGCTGGAAATGCGCGCCGCC
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