mRNA_C-australica_Contig_9874.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9874.1.1
Unique NamemRNA_C-australica_Contig_9874.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Match: A0A2D6TWY9_9PROT (CopG family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D6TWY9_9PROT)

HSP 1 Score: 107 bits (266), Expect = 7.320e-29
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 MKATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQESNRLGITRQSLIKMWIADRLK 216
            MKA DLDKKFD  KED+LD FD  +ATR N E KRVNVDFP WMV+SL++E+ RLG+TRQSLIK+W+ADRL+
Sbjct:    1 MKAHDLDKKFDNNKEDVLDHFDLDTATRPNREAKRVNVDFPSWMVESLDKEAQRLGVTRQSLIKLWLADRLE 72          
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Match: UPI001BC0EF17 (Antitoxin n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=UPI001BC0EF17)

HSP 1 Score: 105 bits (262), Expect = 2.820e-28
Identity = 49/75 (65.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 MKATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQESNRLGITRQSLIKMWIADRLKVLG 225
            MKA++LDKKFD G ED++D FD  +A R N EQKRVNVDFP WMV+SL++E++RLG+TRQS+IK+WIA+RL+  G
Sbjct:    1 MKASELDKKFDEGVEDVIDEFDLSTAMRPNREQKRVNVDFPLWMVESLDREASRLGVTRQSIIKVWIAERLEKAG 75          
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Match: A0A0M2VHV5_9GAMM (CopG family transcriptional regulator n=1 Tax=Arsukibacterium sp. MJ3 TaxID=1632859 RepID=A0A0M2VHV5_9GAMM)

HSP 1 Score: 103 bits (256), Expect = 3.340e-27
Identity = 43/72 (59.72%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 MKATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQESNRLGITRQSLIKMWIADRLK 216
            MKA++LD+KFD  ++D+L+ FD  +ATRINH+QKR+NVDFP+W+V SL++E++R+G+TRQS+IKMW+ +RL+
Sbjct:    1 MKASELDRKFDENQQDVLEHFDLSTATRINHKQKRINVDFPEWVVSSLDREASRIGVTRQSIIKMWLVERLE 72          
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Match: A0A2N3G9C1_9ACTN (CopG family transcriptional regulator n=1 Tax=Actinobacteria bacterium HGW-Actinobacteria-10 TaxID=2013645 RepID=A0A2N3G9C1_9ACTN)

HSP 1 Score: 102 bits (253), Expect = 6.650e-27
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 MKATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQESNRLGITRQSLIKMWIADRLKVLG 225
            MK +D+DK+FD G ED++D FD   ATR N E KRVNVDFP WMV+SL++E++RLG+TRQS+IK+WIA+RL+  G
Sbjct:    1 MKTSDMDKRFDEGIEDVIDDFDLSKATRPNREPKRVNVDFPVWMVESLDREAHRLGVTRQSIIKVWIAERLERAG 75          
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Match: A0A2G2LNF0_9GAMM (CopG family transcriptional regulator n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2G2LNF0_9GAMM)

HSP 1 Score: 102 bits (253), Expect = 7.230e-27
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 MKATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQESNRLGITRQSLIKMWIADRLKVLG 225
            MKA ++DKKFD  KEDILDAFD   A R N EQKRVNVDFP WMV SL++E+  LG+TRQS+IK+W+A+RL+ + 
Sbjct:    1 MKAKEIDKKFDDNKEDILDAFDLSKARRPNQEQKRVNVDFPTWMVTSLDKEARHLGVTRQSIIKVWLAERLEKIA 75          
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Match: A0A2N1XLI1_9GAMM (CopG family transcriptional regulator n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-3 TaxID=2013799 RepID=A0A2N1XLI1_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 2.450e-26
Identity = 45/72 (62.50%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 MKATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQESNRLGITRQSLIKMWIADRLK 216
            MKA D DKKFDLG  DI+D  D  +A RIN EQKR+NVDFP W+V+SL++E+ R+G+TRQS+IK+W+ +RLK
Sbjct:    1 MKAKDFDKKFDLGNRDIIDDLDLSTARRINQEQKRINVDFPAWVVESLDREAARIGVTRQSIIKVWLVERLK 72          
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Match: UPI000586DC7A (hypothetical protein n=1 Tax=Paraglaciecola arctica TaxID=1128911 RepID=UPI000586DC7A)

HSP 1 Score: 100 bits (249), Expect = 3.780e-26
Identity = 43/71 (60.56%), Postives = 63/71 (88.73%), Query Frame = 1
Query:    4 KATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQESNRLGITRQSLIKMWIADRLK 216
            KAT+ D+KFD  +EDIL+ FD  +ATRIN++QKR+NVDFP+W+V SL++E++R+G+TRQS+IKMW+ +RL+
Sbjct:    4 KATEFDRKFDENQEDILEHFDLSTATRINYKQKRINVDFPEWVVNSLDREASRIGVTRQSIIKMWLVERLE 74          
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Match: UPI001906D134 (CopG family transcriptional regulator n=1 Tax=Thiohalocapsa halophila TaxID=69359 RepID=UPI001906D134)

HSP 1 Score: 99.8 bits (247), Expect = 5.940e-26
Identity = 47/72 (65.28%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 MKATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQESNRLGITRQSLIKMWIADRLK 216
            MKA +LDK+FD GKE+ILDAFD  +A R N   KRVNVDFP WMV SL++E++RLG+TRQS+IK+W+A+RL+
Sbjct:    1 MKAHELDKRFDEGKEEILDAFDLATAHRPNQASKRVNVDFPAWMVDSLDREASRLGVTRQSIIKIWLAERLE 72          
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Match: A0A557RKI4_9GAMM (CopG family transcriptional regulator n=2 Tax=Spiribacter TaxID=1335745 RepID=A0A557RKI4_9GAMM)

HSP 1 Score: 99.8 bits (247), Expect = 8.540e-26
Identity = 46/72 (63.89%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 MKATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQESNRLGITRQSLIKMWIADRLK 216
            MKA D DKKFD G EDI+D  D K+A R N E KRVNVDFP W+V+SL+QES R+G+TRQS+IK+W+ +RL+
Sbjct:    1 MKAEDFDKKFDEGAEDIIDDLDLKTARRANQESKRVNVDFPAWVVESLDQESARIGVTRQSIIKVWLVERLR 72          
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Match: UPI0004704C05 (hypothetical protein n=1 Tax=Salinivibrio socompensis TaxID=1510206 RepID=UPI0004704C05)

HSP 1 Score: 99.0 bits (245), Expect = 1.630e-25
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 MKATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQESNRLGITRQSLIKMWIADRLK 216
            MKA D DKKFD GK+DI+D  D  +A R N EQKR+NVDFP W+V+SL++E+ R+G+TRQS+IK+W+ +RLK
Sbjct:    1 MKAKDFDKKFDEGKQDIIDDLDLSTARRANQEQKRINVDFPSWVVESLDREAARVGVTRQSIIKVWLVERLK 72          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9874.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6TWY9_9PROT7.320e-2970.83CopG family transcriptional regulator n=1 Tax=Alph... [more]
UPI001BC0EF172.820e-2865.33Antitoxin n=1 Tax=Clostridiales bacterium TaxID=18... [more]
A0A0M2VHV5_9GAMM3.340e-2759.72CopG family transcriptional regulator n=1 Tax=Arsu... [more]
A0A2N3G9C1_9ACTN6.650e-2762.67CopG family transcriptional regulator n=1 Tax=Acti... [more]
A0A2G2LNF0_9GAMM7.230e-2764.00CopG family transcriptional regulator n=4 Tax=Gamm... [more]
A0A2N1XLI1_9GAMM2.450e-2662.50CopG family transcriptional regulator n=1 Tax=Gamm... [more]
UPI000586DC7A3.780e-2660.56hypothetical protein n=1 Tax=Paraglaciecola arctic... [more]
UPI001906D1345.940e-2665.28CopG family transcriptional regulator n=1 Tax=Thio... [more]
A0A557RKI4_9GAMM8.540e-2663.89CopG family transcriptional regulator n=2 Tax=Spir... [more]
UPI0004704C051.630e-2561.11hypothetical protein n=1 Tax=Salinivibrio socompen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9874contigC-australica_Contig_9874:204..431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400668.Mmwyl1_2747
Model size228
Max annot lvl135619|Oceanospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.87e-26
EggNOG OGs2E3TC@1|root,32YQV@2|Bacteria,1N7A9@1224|Proteobacteria,1SC92@1236|Gammaproteobacteria,1XKWG@135619|Oceanospirillales
DescriptioncopG family
Cds size228
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588854.1017225-CDS-C-australica_Contig_9874:203..4311682588854.1017225-CDS-C-australica_Contig_9874:203..431Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9874 204..431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9874.1.1prot_C-australica_Contig_9874.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9874 204..431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9874.1.1

>prot_C-australica_Contig_9874.1.1 ID=prot_C-australica_Contig_9874.1.1|Name=mRNA_C-australica_Contig_9874.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=76bp
MKATDLDKKFDLGKEDILDAFDPKSATRINHEQKRVNVDFPKWMVKSLNQ
ESNRLGITRQSLIKMWIADRLKVLG*
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mRNA from alignment at C-australica_Contig_9874:204..431-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9874.1.1 ID=mRNA_C-australica_Contig_9874.1.1|Name=mRNA_C-australica_Contig_9874.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=228bp|location=Sequence derived from alignment at C-australica_Contig_9874:204..431- (Chrysoparadoxa australica CS_1217)
ATGAAAGCTACTGATTTAGATAAGAAATTTGACCTTGGTAAGGAGGATAT TCTGGATGCGTTTGATCCTAAGAGTGCTACAAGGATTAATCACGAACAAA AAAGAGTTAATGTCGATTTTCCAAAGTGGATGGTCAAATCACTTAATCAG GAATCCAATCGATTGGGAATCACAAGACAATCCTTAATCAAGATGTGGAT TGCTGATCGATTGAAGGTTTTAGGATAA
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Coding sequence (CDS) from alignment at C-australica_Contig_9874:204..431-

>mRNA_C-australica_Contig_9874.1.1 ID=mRNA_C-australica_Contig_9874.1.1|Name=mRNA_C-australica_Contig_9874.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=228bp|location=Sequence derived from alignment at C-australica_Contig_9874:204..431- (Chrysoparadoxa australica CS_1217)
ATGAAAGCTACTGATTTAGATAAGAAATTTGACCTTGGTAAGGAGGATAT
TCTGGATGCGTTTGATCCTAAGAGTGCTACAAGGATTAATCACGAACAAA
AAAGAGTTAATGTCGATTTTCCAAAGTGGATGGTCAAATCACTTAATCAG
GAATCCAATCGATTGGGAATCACAAGACAATCCTTAATCAAGATGTGGAT
TGCTGATCGATTGAAGGTTTTAGGATAA
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