Homology
BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Match:
A0A222E4E5_9RHOB (Anaphase-promoting complex subunit 4 WD40 domain protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E4E5_9RHOB)
HSP 1 Score: 441 bits (1135), Expect = 8.740e-145
Identity = 227/246 (92.28%), Postives = 233/246 (94.72%), Query Frame = 1
Query: 1 FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDTGAQKWRRATDEPVSALRYSPDGGTLAFAMSGSVAMHAADTGVFLREMDLADEEFVEISGLAFTRDGGGLIVGATNTPGLRWHVDTGALAERIGPALGGRLLGLTGAGDAAVFVAKSGTAIQVFDLEGGNLLRNIDKYRFADVALTPDGTRRIGHVGGAAPGLILVDPDSEATRVILQRDGDFVTGLAFSPDSTRLA 738
FTLP LRPL+SISLDTKGPVRALAFSSDSTWLAVAQAGQA GVSVLQVDTGAQKWRR+TDEPVSALRYSPDGGTLAFAMSGSVAMH A+TGVFLREMD ADEE VEISGLAFTRDGGGLI GA NT GLRWHVDTGALAERIGPALGG+LLGLT AGDAAVFVAKSGTAIQVFDLEGGNLLRN+DKYRFADVALTPDGTR IGHVGGAAPGLILVDPDSEATR LQR GDFV+GLAFSPDSTRLA
Sbjct: 454 FTLPALRPLSSISLDTKGPVRALAFSSDSTWLAVAQAGQASGVSVLQVDTGAQKWRRSTDEPVSALRYSPDGGTLAFAMSGSVAMHVAETGVFLREMDFADEELVEISGLAFTRDGGGLIAGAKNTSGLRWHVDTGALAERIGPALGGQLLGLTAAGDAAVFVAKSGTAIQVFDLEGGNLLRNMDKYRFADVALTPDGTRLIGHVGGAAPGLILVDPDSEATRATLQRAGDFVSGLAFSPDSTRLA 699
BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Match:
A0A239H9N3_9RHOB (WD40 repeat n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239H9N3_9RHOB)
HSP 1 Score: 265 bits (678), Expect = 1.650e-78
Identity = 140/246 (56.91%), Postives = 171/246 (69.51%), Query Frame = 1
Query: 1 FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDTGAQKWRRATDEPVSALRYSPDGGTLAFAMSGSVAMHAADTGVFLREMDLADEEFVEISGLAFTRDGGGLIVGATNTPGLRWHVDTGALAERIGPALGGRLLGLTGAGDAAVFVAKSGTAIQVFDLEGGNLLRNIDKYRFADVALTPDGTRRIGHVGGAAPGLILVDPDSEATRVILQRDGDFVTGLAFSPDSTRLA 738
FTLP L PL S++L+ GP ALAFS D TWLAVAQ+G+ VS L+ +TG ++WR ATDE VA+H A+TG +LR M+ A + ISGLAFTRDG GLI GA +T GL W +D+G L RIGPA+GGRLLG++ AGDAAVFV+KSG +QVFDL+GG L R +D + F DVALTPDG R +G VGGAAPGLIL DP + +L+RDG+FV+ LAFSPDSTRLA
Sbjct: 454 FTLPTLGPLFSVALNEDGPASALAFSPDGTWLAVAQSGKVSAVSGLRGETGERQWRMATDEXXXXXXXXXXXXXXXXXXXXXVAVHVAETGAYLRGMEPAGDAPAAISGLAFTRDGSGLIAGAADTFGLHWQLDSGTLTGRIGPAMGGRLLGVSAAGDAAVFVSKSGGGVQVFDLDGGGLRRGLDAHEFTDVALTPDGIRLMGLVGGAAPGLILADPVNGVAHSVLKRDGEFVSALAFSPDSTRLA 699
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.74e-145 / Id = 92.28 Expect = 1.65e-78 / Id = 56.91 Sequence A0A222E4E5_9RHOB A0A239H9N3_9RHOB back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Seed ortholog 211114.JOEF01000005_gene2124 PFAMs BTAD,HTH_31,Trans_reg_C,WD40 Model size 738 Max annot lvl 201174|Actinobacteria Hectar predicted targeting category other localisation Exons 1 Evalue 4.62e-05 EggNOG OGs COG2319@1|root,COG2319@2|Bacteria,2GJN3@201174|Actinobacteria,4DZJG@85010|Pseudonocardiales Description WD40 repeats Cds size 738 COG category T
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682588852.794261-CDS-C-australica_Contig_9853:22..760 1682588852.794261-CDS-C-australica_Contig_9853:22..760 Chrysoparadoxa australica CS_1217 CDS C-australica_Contig_9853 23..760 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9853.1.1
>prot_C-australica_Contig_9853.1.1 ID=prot_C-australica_Contig_9853.1.1|Name=mRNA_C-australica_Contig_9853.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=246bp
FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDT back to top mRNA from alignment at C-australica_Contig_9853:23..760+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9853.1.1 ID=mRNA_C-australica_Contig_9853.1.1|Name=mRNA_C-australica_Contig_9853.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=738bp|location=Sequence derived from alignment at C-australica_Contig_9853:23..760+ (Chrysoparadoxa australica CS_1217)TTCACGCTGCCCGAATTGAGGCCGTTGAACTCCATCTCGTTGGACACCAA
AGGTCCGGTCCGCGCTTTGGCGTTTTCATCCGATTCAACATGGCTGGCAG
TTGCGCAAGCTGGCCAAGCGCCGGGCGTTTCGGTTTTGCAGGTCGATACG
GGCGCGCAAAAGTGGCGTAGGGCCACCGACGAACCCGTCAGCGCGCTAAG
GTACAGCCCCGACGGGGGGACACTGGCCTTTGCGATGTCCGGGTCGGTTG
CGATGCATGCCGCGGACACTGGTGTGTTTCTGCGGGAAATGGATCTCGCT
GACGAAGAGTTTGTCGAGATCTCGGGACTGGCGTTCACCCGCGACGGCGG
CGGGTTGATCGTCGGAGCAACGAATACACCCGGTTTGCGCTGGCATGTAG
ACACGGGCGCGCTGGCCGAACGGATCGGCCCTGCGCTGGGCGGGCGGTTG
CTGGGTCTGACTGGGGCGGGCGATGCCGCGGTGTTCGTGGCGAAGTCCGG
CACCGCCATTCAGGTTTTCGACCTCGAAGGGGGAAACCTGCTGCGGAACA
TAGATAAGTACAGGTTCGCAGATGTGGCGCTGACACCCGATGGCACCCGC
CGGATCGGCCATGTCGGAGGTGCGGCACCGGGACTGATCCTTGTCGACCC
GGACAGTGAGGCGACCCGCGTCATTCTGCAACGAGACGGCGATTTCGTAA
CTGGGCTGGCCTTCAGCCCGGACAGCACACGGCTTGCA back to top Coding sequence (CDS) from alignment at C-australica_Contig_9853:23..760+
>mRNA_C-australica_Contig_9853.1.1 ID=mRNA_C-australica_Contig_9853.1.1|Name=mRNA_C-australica_Contig_9853.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=738bp|location=Sequence derived from alignment at C-australica_Contig_9853:23..760+ (Chrysoparadoxa australica CS_1217) back to top