mRNA_C-australica_Contig_9853.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9853.1.1
Unique NamemRNA_C-australica_Contig_9853.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Match: A0A222E4E5_9RHOB (Anaphase-promoting complex subunit 4 WD40 domain protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E4E5_9RHOB)

HSP 1 Score: 441 bits (1135), Expect = 8.740e-145
Identity = 227/246 (92.28%), Postives = 233/246 (94.72%), Query Frame = 1 
Query:    1 FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDTGAQKWRRATDEPVSALRYSPDGGTLAFAMSGSVAMHAADTGVFLREMDLADEEFVEISGLAFTRDGGGLIVGATNTPGLRWHVDTGALAERIGPALGGRLLGLTGAGDAAVFVAKSGTAIQVFDLEGGNLLRNIDKYRFADVALTPDGTRRIGHVGGAAPGLILVDPDSEATRVILQRDGDFVTGLAFSPDSTRLA 738
            FTLP LRPL+SISLDTKGPVRALAFSSDSTWLAVAQAGQA GVSVLQVDTGAQKWRR+TDEPVSALRYSPDGGTLAFAMSGSVAMH A+TGVFLREMD ADEE VEISGLAFTRDGGGLI GA NT GLRWHVDTGALAERIGPALGG+LLGLT AGDAAVFVAKSGTAIQVFDLEGGNLLRN+DKYRFADVALTPDGTR IGHVGGAAPGLILVDPDSEATR  LQR GDFV+GLAFSPDSTRLA
Sbjct:  454 FTLPALRPLSSISLDTKGPVRALAFSSDSTWLAVAQAGQASGVSVLQVDTGAQKWRRSTDEPVSALRYSPDGGTLAFAMSGSVAMHVAETGVFLREMDFADEELVEISGLAFTRDGGGLIAGAKNTSGLRWHVDTGALAERIGPALGGQLLGLTAAGDAAVFVAKSGTAIQVFDLEGGNLLRNMDKYRFADVALTPDGTRLIGHVGGAAPGLILVDPDSEATRATLQRAGDFVSGLAFSPDSTRLA 699
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BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Match: A0A239H9N3_9RHOB (WD40 repeat n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239H9N3_9RHOB)

HSP 1 Score: 265 bits (678), Expect = 1.650e-78
Identity = 140/246 (56.91%), Postives = 171/246 (69.51%), Query Frame = 1 
Query:    1 FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDTGAQKWRRATDEPVSALRYSPDGGTLAFAMSGSVAMHAADTGVFLREMDLADEEFVEISGLAFTRDGGGLIVGATNTPGLRWHVDTGALAERIGPALGGRLLGLTGAGDAAVFVAKSGTAIQVFDLEGGNLLRNIDKYRFADVALTPDGTRRIGHVGGAAPGLILVDPDSEATRVILQRDGDFVTGLAFSPDSTRLA 738
            FTLP L PL S++L+  GP  ALAFS D TWLAVAQ+G+   VS L+ +TG ++WR ATDE                     VA+H A+TG +LR M+ A +    ISGLAFTRDG GLI GA +T GL W +D+G L  RIGPA+GGRLLG++ AGDAAVFV+KSG  +QVFDL+GG L R +D + F DVALTPDG R +G VGGAAPGLIL DP +     +L+RDG+FV+ LAFSPDSTRLA
Sbjct:  454 FTLPTLGPLFSVALNEDGPASALAFSPDGTWLAVAQSGKVSAVSGLRGETGERQWRMATDEXXXXXXXXXXXXXXXXXXXXXVAVHVAETGAYLRGMEPAGDAPAAISGLAFTRDGSGLIAGAADTFGLHWQLDSGTLTGRIGPAMGGRLLGVSAAGDAAVFVSKSGGGVQVFDLDGGGLRRGLDAHEFTDVALTPDGIRLMGLVGGAAPGLILADPVNGVAHSVLKRDGEFVSALAFSPDSTRLA 699
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9853.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A222E4E5_9RHOB8.740e-14592.28Anaphase-promoting complex subunit 4 WD40 domain p... [more]
A0A239H9N3_9RHOB1.650e-7856.91WD40 repeat n=1 Tax=Antarctobacter heliothermus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9853contigC-australica_Contig_9853:23..760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog211114.JOEF01000005_gene2124
PFAMsBTAD,HTH_31,Trans_reg_C,WD40
Model size738
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.62e-05
EggNOG OGsCOG2319@1|root,COG2319@2|Bacteria,2GJN3@201174|Actinobacteria,4DZJG@85010|Pseudonocardiales
DescriptionWD40 repeats
Cds size738
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588852.794261-CDS-C-australica_Contig_9853:22..7601682588852.794261-CDS-C-australica_Contig_9853:22..760Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9853 23..760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9853.1.1prot_C-australica_Contig_9853.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9853 23..760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9853.1.1

>prot_C-australica_Contig_9853.1.1 ID=prot_C-australica_Contig_9853.1.1|Name=mRNA_C-australica_Contig_9853.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=246bp
FTLPELRPLNSISLDTKGPVRALAFSSDSTWLAVAQAGQAPGVSVLQVDT
GAQKWRRATDEPVSALRYSPDGGTLAFAMSGSVAMHAADTGVFLREMDLA
DEEFVEISGLAFTRDGGGLIVGATNTPGLRWHVDTGALAERIGPALGGRL
LGLTGAGDAAVFVAKSGTAIQVFDLEGGNLLRNIDKYRFADVALTPDGTR
RIGHVGGAAPGLILVDPDSEATRVILQRDGDFVTGLAFSPDSTRLA
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mRNA from alignment at C-australica_Contig_9853:23..760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9853.1.1 ID=mRNA_C-australica_Contig_9853.1.1|Name=mRNA_C-australica_Contig_9853.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=738bp|location=Sequence derived from alignment at C-australica_Contig_9853:23..760+ (Chrysoparadoxa australica CS_1217)
TTCACGCTGCCCGAATTGAGGCCGTTGAACTCCATCTCGTTGGACACCAA
AGGTCCGGTCCGCGCTTTGGCGTTTTCATCCGATTCAACATGGCTGGCAG
TTGCGCAAGCTGGCCAAGCGCCGGGCGTTTCGGTTTTGCAGGTCGATACG
GGCGCGCAAAAGTGGCGTAGGGCCACCGACGAACCCGTCAGCGCGCTAAG
GTACAGCCCCGACGGGGGGACACTGGCCTTTGCGATGTCCGGGTCGGTTG
CGATGCATGCCGCGGACACTGGTGTGTTTCTGCGGGAAATGGATCTCGCT
GACGAAGAGTTTGTCGAGATCTCGGGACTGGCGTTCACCCGCGACGGCGG
CGGGTTGATCGTCGGAGCAACGAATACACCCGGTTTGCGCTGGCATGTAG
ACACGGGCGCGCTGGCCGAACGGATCGGCCCTGCGCTGGGCGGGCGGTTG
CTGGGTCTGACTGGGGCGGGCGATGCCGCGGTGTTCGTGGCGAAGTCCGG
CACCGCCATTCAGGTTTTCGACCTCGAAGGGGGAAACCTGCTGCGGAACA
TAGATAAGTACAGGTTCGCAGATGTGGCGCTGACACCCGATGGCACCCGC
CGGATCGGCCATGTCGGAGGTGCGGCACCGGGACTGATCCTTGTCGACCC
GGACAGTGAGGCGACCCGCGTCATTCTGCAACGAGACGGCGATTTCGTAA
CTGGGCTGGCCTTCAGCCCGGACAGCACACGGCTTGCA
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Coding sequence (CDS) from alignment at C-australica_Contig_9853:23..760+

>mRNA_C-australica_Contig_9853.1.1 ID=mRNA_C-australica_Contig_9853.1.1|Name=mRNA_C-australica_Contig_9853.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=738bp|location=Sequence derived from alignment at C-australica_Contig_9853:23..760+ (Chrysoparadoxa australica CS_1217)
TTCACGCTGCCCGAATTGAGGCCGTTGAACTCCATCTCGTTGGACACCAA
AGGTCCGGTCCGCGCTTTGGCGTTTTCATCCGATTCAACATGGCTGGCAG
TTGCGCAAGCTGGCCAAGCGCCGGGCGTTTCGGTTTTGCAGGTCGATACG
GGCGCGCAAAAGTGGCGTAGGGCCACCGACGAACCCGTCAGCGCGCTAAG
GTACAGCCCCGACGGGGGGACACTGGCCTTTGCGATGTCCGGGTCGGTTG
CGATGCATGCCGCGGACACTGGTGTGTTTCTGCGGGAAATGGATCTCGCT
GACGAAGAGTTTGTCGAGATCTCGGGACTGGCGTTCACCCGCGACGGCGG
CGGGTTGATCGTCGGAGCAACGAATACACCCGGTTTGCGCTGGCATGTAG
ACACGGGCGCGCTGGCCGAACGGATCGGCCCTGCGCTGGGCGGGCGGTTG
CTGGGTCTGACTGGGGCGGGCGATGCCGCGGTGTTCGTGGCGAAGTCCGG
CACCGCCATTCAGGTTTTCGACCTCGAAGGGGGAAACCTGCTGCGGAACA
TAGATAAGTACAGGTTCGCAGATGTGGCGCTGACACCCGATGGCACCCGC
CGGATCGGCCATGTCGGAGGTGCGGCACCGGGACTGATCCTTGTCGACCC
GGACAGTGAGGCGACCCGCGTCATTCTGCAACGAGACGGCGATTTCGTAA
CTGGGCTGGCCTTCAGCCCGGACAGCACACGGCTTGCA
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