mRNA_C-australica_Contig_985.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_985.1.1
Unique NamemRNA_C-australica_Contig_985.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Match: A0A7S3L2Y7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2Y7_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.100e-30
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  251 TVSKPLALDLGKMFEKMTDGRQARASHILIKG-PDGEAKLEVLKGKIGDNANKFMNTAQQFSECPSAKNGGQLGKFKRGMMVAEFDDCVFSEEVGKVHGPVKTQFGHHLILIEERDE 598
            ++S  L   +G  F++ T   +A ASHILI+G  + E KL+ LK KIGD+  KF   A +FSECPS   GG LG+F  G MV EFD+ VF+E+VG+VHGPVKTQFG+HLI I +R E
Sbjct:   58 SLSMGLLDGVGGFFKRFTT--KATASHILIRGGAEAEFKLQDLKKKIGDSPVKFAEAAAKFSECPSKAQGGSLGEFGPGAMVKEFDEVVFNEKVGQVHGPVKTQFGYHLIYIADRTE 172          
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Match: A0A7S1Y1S1_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y1S1_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.530e-30
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 2
Query:  275 DLGKMFEKMTDGRQARASHILIKG-PDGEAKLEVLKGKIGDNANKFMNTAQQFSECPSAKNGGQLGKFKRGMMVAEFDDCVFSEEVGKVHGPVKTQFGHHLILIEERDE 598
            ++G  F++ T  ++A ASHILIKG P+   KLE LK +I ++  KF   A +FS CPSA+ GG+LG+F  G MV EFD  VF+++VG VHGP+KTQFG+HLI + +R E
Sbjct:   35 EVGTFFKRFT--QKASASHILIKGGPEAANKLEELKVEIDNSPVKFAEAASRFSSCPSARKGGELGEFGPGQMVKEFDQVVFNDDVGVVHGPIKTQFGYHLIYVTDRTE 141          
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Match: A0A7S1BYF0_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYF0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.670e-29
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 2
Query:  251 TVSKPLALDLGKMFEKMTDGRQARASHILIKG-PDGEAKLEVLKGKIGDNANKFMNTAQQFSECPSAKNGGQLGKFKRGMMVAEFDDCVFSEEVGKVHGPVKTQFGHHLILIEERDE 598
            T+S     D+ K+F+ +T   +A ASHILIKG  + E KL+ LK +I D+  KF   A  +S CPS K+GG LG+F  G MV EFD+ VF+E VG VHGP++TQFG+HLILI ER +
Sbjct:   70 TLSMGFFDDVQKIFKSLTV--RASASHILIKGGAEAENKLQDLKEEIEDSPVKFAEMAAMYSSCPSGKSGGNLGEFGPGQMVKEFDNVVFNEAVGVVHGPIQTQFGYHLILINERSD 184          
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Match: A0A7S2HC75_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HC75_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.080e-29
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  314 QARASHILIKGPDGEA--KLEVLKGKIGDNANKFMNTAQQFSECPSAKNGGQLGKFKRGMMVAEFDDCVFSEEVGKVHGPVKTQFGHHLILIEERDE 598
            +A ASHILIKG D EA  K++ +K +IG++  KF   A Q S+CPS + GG LG+F R  MV EFD  VF+EEVG VHGP++T FG HLI IE R +
Sbjct:   17 RAEASHILIKGTDAEAEQKIKAIKEEIGNDVTKFAEAATQHSDCPSGRQGGSLGEFGRYSMVPEFDKVVFNEEVGVVHGPIRTSFGFHLIFIERRSD 113          
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Match: A0A7S2B6V5_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6V5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.890e-28
Identity = 68/162 (41.98%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  170 MKLFFIACA---ALCIAISTAFAPLTPVGRTVSKPLALDLGKMFEKMTDGRQARASHILIKGPDGEAKLE---------VLKGKIGDNA-------NKFMNTAQQFSECPSAKNGGQLGKFKRGMMVAEFDDCVFSEEVGKVHGPVKTQFGHHLILIEERDE 598
            M++F +A +   A      +AF P T   +   +PL +  G        G QA ASHILI G D ++KLE          LKGK  D         + F   A++FS CPS + GG LG F +G MV EFD+ VF+++VG VHGP++TQFG HLILI +RDE
Sbjct:    3 MRIFILAFSPSIATSFVPQSAFKPHTACHQNNIQPLKM--GFFDNLFGGGVQAEASHILISGDDADSKLEDIKQNIYKTALKGKSADMGVDAEALMSSFAQQARKFSSCPSGQKGGSLGCFGKGQMVPEFDEVVFNDQVGVVHGPIQTQFGSHLILITDRDE 162          
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Match: A0A448ZAE9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZAE9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.050e-28
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  275 DLGKMFEKMTDGRQARASHILIKG-PDGEAKLEVLKGKIGDNANKFMNTAQQFSECPSAKNGGQLGKFKRGMMVAEFDDCVFSEEVGKVHGPVKTQFGHHLILIEERDE 598
            DL   F++ T   +A ASHILIKG  + E KLE LK +IGD+   F   A Q+S CPS  +GG LG F  G MV EFD  VF+E +G VHGP+KTQFG+HLI I +R E
Sbjct:   87 DLQGFFKRFTT--RASASHILIKGGAEAENKLEDLKVEIGDSPVAFAKAAAQYSACPSGSSGGDLGSFGPGAMVKEFDAVVFNEPIGVVHGPIKTQFGYHLIYIRDRTE 193          
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Match: R1DQG9_EMIHU (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DQG9_EMIHU)

HSP 1 Score: 112 bits (279), Expect = 7.010e-27
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 2
Query:  278 LGKMFEKMTDGRQARASHILI----KGPDGEAKLEVLKGKIGDNANKFMNTAQQFSECPSAKNGGQLGKFKRGMMVAEFDDCVFS---EEVGKVHGPVKTQFGHHLILIEERDE 598
            LG  F  +TD R+ARASHIL        D EA+   +K K+     +F + A  +S CPSA  GG LG+FKRG MV EFD+ VFS   E++G++ GP+KTQFG H+I ++ER E
Sbjct:   53 LGTAFAALTDDRKARASHILFGFKENAEDAEARARDVKCKLDSGEIEFESAASTYSSCPSAARGGDLGEFKRGAMVPEFDEAVFSQTSEQLGQIIGPIKTQFGWHIIRVDERSE 166          
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Match: A0A2E4JD33_9BACT (Peptidylprolyl isomerase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2E4JD33_9BACT)

HSP 1 Score: 107 bits (268), Expect = 3.530e-26
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 2
Query:  317 ARASHILIKGPDGEAKLEVLKGKIGDNANKFMNTAQQFSECPSAKNGGQLGKFKRGMMVAEFDDCVFSEEVGKVHGPVKTQFGHHLILIEER 592
            ARA HIL+K  D       LK +I D AN F   A++ S+CPS + GG LG+FK G MV EFD  VFSEE+GKVHGP+KTQFG+HL+ I  R
Sbjct:    4 ARARHILVKSEDS---CTALKQEIADGAN-FAAVAKEHSQCPSGQQGGDLGEFKPGQMVPEFDKVVFSEEIGKVHGPIKTQFGYHLVEITNR 91          
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Match: A0A1Z5J767_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J767_FISSO)

HSP 1 Score: 117 bits (294), Expect = 4.300e-26
Identity = 65/146 (44.52%), Postives = 86/146 (58.90%), Query Frame = 2
Query:  176 LFFIACAALCIAIS-TAFAPLTPVGRTVSKPLALDLGKMFEKMTDG--RQARASHILIKGPDGEA--KLEVLKGKIGDNANKFMNTAQQFSECPSAKNGGQLGKFKRGMMVAEFDDCVFSEEVGKVHGPVKTQFGHHLILIEERDE 598
            +FF     LC+A   T+F    P        L ++  +  +       R+A ASHILIKG   E   KL+ LK +I ++  KF+  A Q+SECPSA+ GG LG F  G MV EFD  VF+E VG+VHGP++TQFG+HLI I ER +
Sbjct:  850 IFFFLVTLLCVANRVTSFVSKAPQHERTCSSLNMNFLENAQNFLKSFSRRAEASHILIKGGGAETEFKLQDLKQEIDNSPVKFVAAAAQYSECPSAQRGGNLGSFGPGAMVKEFDQVVFNEAVGQVHGPIRTQFGYHLIYIHERSD 995          
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Match: A0A7S3FK64_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FK64_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 5.390e-26
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:  290 FEKMTDGRQARASHILIKGPDGEA--KLEVLKGKIGDNANKFMNTAQQFSECPSAKNGGQLGKFKRGMMVAEFDDCVFSEEVGKVHGPVKTQFGHHLILI 583
            FE++TD R ARASHIL+KG D +   ++   K ++GD+   F   A+  S+CPS   GG LG F RG MV EFD  VFS+E G V+GPV+T FGHHLI +
Sbjct:   61 FERLTDFRVARASHILLKGFDDDTVTRMAAWKAELGDDPEAFAELARASSQCPSRVKGGDLGFFTRGKMVKEFDRVVFSQEPGYVYGPVRTDFGHHLIYL 160          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3L2Y7_9STRA1.100e-3053.85Peptidyl-prolyl cis-trans isomerase n=1 Tax=Amphor... [more]
A0A7S1Y1S1_9STRA3.530e-3052.29Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gramma... [more]
A0A7S1BYF0_9STRA4.670e-2952.14Peptidyl-prolyl cis-trans isomerase n=2 Tax=Coreth... [more]
A0A7S2HC75_9STRA5.080e-2955.67Peptidyl-prolyl cis-trans isomerase n=1 Tax=Helico... [more]
A0A7S2B6V5_9STRA3.890e-2841.98Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyo... [more]
A0A448ZAE9_9STRA9.050e-2854.13Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudo... [more]
R1DQG9_EMIHU7.010e-2748.25Peptidyl-prolyl cis-trans isomerase n=1 Tax=Emilia... [more]
A0A2E4JD33_9BACT3.530e-2656.52Peptidylprolyl isomerase n=1 Tax=Acidobacteria bac... [more]
A0A1Z5J767_FISSO4.300e-2644.52Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3FK64_9EUKA5.390e-2652.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Haptol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_985contigC-australica_Contig_985:2..1234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0TPU0
PFAMsRotamase_3
Model size831
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorychloroplast
Exons5
Evalue3.98e-29
EggNOG OGsCOG0760@1|root,KOG3258@2759|Eukaryota,2XH79@2836|Bacillariophyta
Ec32 ortholog descriptionPeptidyl-prolyl cis-trans isomerase, PpiC-type
Ec32 orthologEc-21_005670.1
DescriptionPPIC-type PPIASE domain
Cds size435
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_985.1.1prot_C-australica_Contig_985.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_985 171..1007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588851.8013163-UTR-C-australica_Contig_985:1..1701682588851.8013163-UTR-C-australica_Contig_985:1..170Chrysoparadoxa australica CS_1217UTRC-australica_Contig_985 2..170 +
1682588851.8778849-UTR-C-australica_Contig_985:1007..12341682588851.8778849-UTR-C-australica_Contig_985:1007..1234Chrysoparadoxa australica CS_1217UTRC-australica_Contig_985 1008..1234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588851.8149562-CDS-C-australica_Contig_985:170..2991682588851.8149562-CDS-C-australica_Contig_985:170..299Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 171..299 +
1682588851.825291-CDS-C-australica_Contig_985:451..5581682588851.825291-CDS-C-australica_Contig_985:451..558Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 452..558 +
1682588851.8354585-CDS-C-australica_Contig_985:652..6981682588851.8354585-CDS-C-australica_Contig_985:652..698Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 653..698 +
1682588851.8455122-CDS-C-australica_Contig_985:781..9001682588851.8455122-CDS-C-australica_Contig_985:781..900Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 782..900 +
1682588851.8595712-CDS-C-australica_Contig_985:973..10071682588851.8595712-CDS-C-australica_Contig_985:973..1007Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 974..1007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_985.1.1

>prot_C-australica_Contig_985.1.1 ID=prot_C-australica_Contig_985.1.1|Name=mRNA_C-australica_Contig_985.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=145bp
MKLFFIACAALCIAISTAFAPLTPVGRTVSKPLALDLGKMFEKMTDGRQA
RASHILIKGPDGEAKLEVLKGKIGDNANKFMNTAQQFSECPSAKNGGQLG
KFKRGMMVAEFDDCVFSEEVGKVHGPVKTQFGHHLILIEERDEK*
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mRNA from alignment at C-australica_Contig_985:2..1234+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_985.1.1 ID=mRNA_C-australica_Contig_985.1.1|Name=mRNA_C-australica_Contig_985.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1233bp|location=Sequence derived from alignment at C-australica_Contig_985:2..1234+ (Chrysoparadoxa australica CS_1217)
TGCGTTCACTTCGGAACCCCAAGGGTGTGTCCCCAGACGTCGAAAACCTA TATATCCAGCTTCGCAGGCTCAGATGTTCAGTAGGGAATTGGAGATCCGG GGGTTTCCCTGATCATTTATCGAGCCAAGTAGAAAGTGGAAAAGAGGAAA AAAGGTTTTAAGCGGAACCATGAAGCTCTTTTTTATTGCCTGCGCTGCCC TATGCATTGCTATTTCCACTGCCTTTGCTCCTTTGACGCCAGTTGGTCGT ACCGTGAGCAAACCCCTAGCCCTCGACCTTGGGAAGATGTTTGAGAAGGT GCGACTGCCCCTCGAGCATTCTCTGTCAAGCTATAGGTTCTTTCAAGGGA TCCACCTAACAGCGGCACTCCTCACCTCACCTCATTCTCCCACCTTACTT TTACGTGCCACTACCACCCACCACGCACTCTCGGACCATCCCCACCCCAG ATGACTGATGGGAGGCAGGCAAGAGCCTCACACATTCTCATCAAGGGGCC AGACGGGGAGGCCAAGTTGGAGGTGCTCAAGGGAAAGATTGGAGACAACG CGAACAAGTGAGGATCCCACAGCATTATTTGTTTTCTTGTATAGACGAAG AGGGAGGCATAGGACAAGAACTAACAGGCCATGTTCCGTATTCTGTATCA GATTCATGAACACCGCGCAGCAGTTCAGCGAGTGCCCTTCAGCAAAGGTA ACCCTTACCCTTACTGATATTGTGCTCATGCACCCAAGCCTCATACCTAA ACCTTCTTGCTCGTTTCCAACATATTGCAGAATGGAGGACAGCTGGGGAA GTTTAAGCGTGGCATGATGGTGGCAGAGTTTGACGACTGCGTGTTCTCAG AAGAAGTGGGGAAGGTTCACGGCCCCGTGAAAACTCAGTTCGGCCATCAG TGAGTCAGTCCTGTGCTTCCATGCTCATCCGCTATTCCTTCTAACCCGCC CCCTTCTCTCTCTCTTGCACAGCCTCATCCTTATTGAAGAGCGCGACGAG AAGTGAAGCCAGCCAGGCTGCGCGATTTCCTCACATTAGAAGCCGCCCAA TAGACGTTAAAGCAAATGGCCCCACTCCCTCTTCTCACTGACCAAATTTT TGGCCAGTATCATACTATACTGAAGCCGGGGGTATTCTTAGCCAAAATCA AAGGGAATCAATCACCTTCAGGGCAAGTAACTCAGCCCCTGGCTTGACCA CACTATCCCAATCTTGTTTTTTTTTCTTGAAAG
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Coding sequence (CDS) from alignment at C-australica_Contig_985:2..1234+

>mRNA_C-australica_Contig_985.1.1 ID=mRNA_C-australica_Contig_985.1.1|Name=mRNA_C-australica_Contig_985.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=435bp|location=Sequence derived from alignment at C-australica_Contig_985:2..1234+ (Chrysoparadoxa australica CS_1217)
ATGAAGCTCTTTTTTATTGCCTGCGCTGCCCTATGCATTGCTATTTCCAC
TGCCTTTGCTCCTTTGACGCCAGTTGGTCGTACCGTGAGCAAACCCCTAG
CCCTCGACCTTGGGAAGATGTTTGAGAAGATGACTGATGGGAGGCAGGCA
AGAGCCTCACACATTCTCATCAAGGGGCCAGACGGGGAGGCCAAGTTGGA
GGTGCTCAAGGGAAAGATTGGAGACAACGCGAACAAATTCATGAACACCG
CGCAGCAGTTCAGCGAGTGCCCTTCAGCAAAGAATGGAGGACAGCTGGGG
AAGTTTAAGCGTGGCATGATGGTGGCAGAGTTTGACGACTGCGTGTTCTC
AGAAGAAGTGGGGAAGGTTCACGGCCCCGTGAAAACTCAGTTCGGCCATC
ACCTCATCCTTATTGAAGAGCGCGACGAGAAGTGA
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