Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Seed ortholog | 2880.D7FM51 |
| PFAMs | FAM194 |
| Model size | 903 |
| Max annot lvl | 2759|Eukaryota |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Evalue | 3.62e-30 |
| EggNOG OGs | 29SX0@1|root,2RXEY@2759|Eukaryota |
| Ec32 ortholog description | Thioredoxin-like fold |
| Ec32 ortholog | Ec-01_010660.1 |
| Description | FAM194 protein |
| Cds size | 750 |
| COG category | S |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682588849.8570259-UTR-C-australica_Contig_982:15428..15581 | 1682588849.8570259-UTR-C-australica_Contig_982:15428..15581 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_982 15429..15581 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682588849.8709025-CDS-C-australica_Contig_982:15581..15717 | 1682588849.8709025-CDS-C-australica_Contig_982:15581..15717 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_982 15582..15717 + |
| 1682588849.8802907-CDS-C-australica_Contig_982:15794..16036 | 1682588849.8802907-CDS-C-australica_Contig_982:15794..16036 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_982 15795..16036 + |
| 1682588849.8890283-CDS-C-australica_Contig_982:16109..16253 | 1682588849.8890283-CDS-C-australica_Contig_982:16109..16253 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_982 16110..16253 + |
| 1682588849.8977525-CDS-C-australica_Contig_982:16347..16405 | 1682588849.8977525-CDS-C-australica_Contig_982:16347..16405 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_982 16348..16405 + |
| 1682588849.906578-CDS-C-australica_Contig_982:16478..16540 | 1682588849.906578-CDS-C-australica_Contig_982:16478..16540 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_982 16479..16540 + |
| 1682588849.9158988-CDS-C-australica_Contig_982:16636..16744 | 1682588849.9158988-CDS-C-australica_Contig_982:16636..16744 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_982 16637..16744 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_982.8.1 >prot_C-australica_Contig_982.8.1 ID=prot_C-australica_Contig_982.8.1|Name=mRNA_C-australica_Contig_982.8.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=250bp
MGGKQDGDQDLRYANGKRAVCVAANNTLCFDEKGSLVAALDEQGSGFVRG
SVAEGVALVLNPKGGLLREKGMIKKEWRWDPVMHKQCGAPPPSLCLQPGK
HFIFEMTARDRQTITFSQAGRTHTLEVGLRSKPFVSQPRITLVKRNIMHC
EDMALKRDLLKPQSKNMAGELKDMVGRLESCFDGLEPSVEPFLGFRQIKE
DALQATQSELPRIKASGGETGPMRGFGATLYQDAPAASSLEGSRFMAEGT back to topmRNA from alignment at C-australica_Contig_982:15429..16744+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_982.8.1 ID=mRNA_C-australica_Contig_982.8.1|Name=mRNA_C-australica_Contig_982.8.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1316bp|location=Sequence derived from alignment at C-australica_Contig_982:15429..16744+ (Chrysoparadoxa australica CS_1217)
AGCTTGGTCTACTACTGCAATGATACCAGAAGTACTGTGAGCGTGGTGGA
ATTCAGGTTAGCAAGCGGGAGGTGCAAGTTTCCCTGCTTGCACCCACTTT
TCGTCTCTCCGATTTGAGTGAAGTTTCGATAGGGGTTTCAATAACCCAGA
GAGATGGGGGGGAAGCAAGATGGAGATCAGGACTTGAGGTATGCAAATGG
TAAGAGAGCCGTCTGCGTTGCGGCGAACAACACACTCTGCTTTGATGAGA
AAGGATCGTTGGTGGCGGCCTTGGATGAACAGGGGTCAGGTGAGAGGAGA
ATGCAACCCAGCCTGCTTAAAACATGACTACAGTTTGATCTAACTTATCT
AAACCTGACTGAGCAGGATTTGTGAGAGGTTCGGTGGCTGAGGGTGTTGC
ACTGGTCCTAAACCCAAAGGGGGGCTTGCTGAGGGAAAAAGGCATGATTA
AGAAGGAGTGGCGCTGGGATCCAGTCATGCATAAGCAGTGCGGTGCACCG
CCACCATCCCTCTGCCTGCAGCCTGGCAAGCACTTTATCTTTGAGATGAC
TGCAAGGGACCGGCAGACCATAACGTTCTCCCAAGCAGGCAGAACCCACA
CTCTGGAGGTTGGTCCCTAGCTTTCAAGCCAAAGCTCACATGGAGGAGCT
AAGCAACAAGCTGCATCTATGGCACTCACAGGTCGGCCTTCGCTCCAAGC
CGTTCGTCTCGCAGCCGAGGATAACTCTTGTGAAGAGAAACATTATGCAT
TGCGAGGACATGGCTCTGAAGCGGGATCTTCTCAAGCCACAGAGCAAGAA
CATGGCTGGAGAGCTGAAGGATATGGTGCGTGACCACTGCATGACCACTG
CATGGCTGCTGCCCTCACCATTCAGCTTATGGAGAGGCAAGAAGCTCTGA
CCAATCTCCTCTATCCCAGGTGGGGCGTTTGGAGAGCTGCTTTGACGGAC
TTGAGCCCTCTGTGGAGCCATTTCTTGGTCCGCCCCTTACCCTTAAACGT
GTCCTCATGTTTGGAAGCAACAATCTCACCACCTCTTCTGCTGCGAGCAG
GCTTTAGGCAGATCAAGGAAGATGCGCTCCAAGCAACCCAATCAGAACTG
CCAAGAATAAAGGTAATTGAAGCAGTCTTATTCGGAGCCAATCCCTGCCC
CTCCTGCTCTCAGGAGCTGACCTGATATGGCCTACGCTTCCCAATTTTTG
ATATCAAGGCTAGCGGTGGGGAAACCGGGCCGATGAGAGGGTTTGGGGCC
ACCCTCTACCAAGATGCACCCGCTGCGTCTTCATTAGAGGGGAGCAGGTT
CATGGCTGAAGGAACG back to topCoding sequence (CDS) from alignment at C-australica_Contig_982:15429..16744+ >mRNA_C-australica_Contig_982.8.1 ID=mRNA_C-australica_Contig_982.8.1|Name=mRNA_C-australica_Contig_982.8.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=750bp|location=Sequence derived from alignment at C-australica_Contig_982:15429..16744+ (Chrysoparadoxa australica CS_1217)
ATGGGGGGGAAGCAAGATGGAGATCAGGACTTGAGGTATGCAAATGGTAA
GAGAGCCGTCTGCGTTGCGGCGAACAACACACTCTGCTTTGATGAGAAAG
GATCGTTGGTGGCGGCCTTGGATGAACAGGGGTCAGGATTTGTGAGAGGT
TCGGTGGCTGAGGGTGTTGCACTGGTCCTAAACCCAAAGGGGGGCTTGCT
GAGGGAAAAAGGCATGATTAAGAAGGAGTGGCGCTGGGATCCAGTCATGC
ATAAGCAGTGCGGTGCACCGCCACCATCCCTCTGCCTGCAGCCTGGCAAG
CACTTTATCTTTGAGATGACTGCAAGGGACCGGCAGACCATAACGTTCTC
CCAAGCAGGCAGAACCCACACTCTGGAGGTCGGCCTTCGCTCCAAGCCGT
TCGTCTCGCAGCCGAGGATAACTCTTGTGAAGAGAAACATTATGCATTGC
GAGGACATGGCTCTGAAGCGGGATCTTCTCAAGCCACAGAGCAAGAACAT
GGCTGGAGAGCTGAAGGATATGGTGGGGCGTTTGGAGAGCTGCTTTGACG
GACTTGAGCCCTCTGTGGAGCCATTTCTTGGCTTTAGGCAGATCAAGGAA
GATGCGCTCCAAGCAACCCAATCAGAACTGCCAAGAATAAAGGCTAGCGG
TGGGGAAACCGGGCCGATGAGAGGGTTTGGGGCCACCCTCTACCAAGATG
CACCCGCTGCGTCTTCATTAGAGGGGAGCAGGTTCATGGCTGAAGGAACG back to top
|