mRNA_C-australica_Contig_982.8.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_982.8.1
Unique NamemRNA_C-australica_Contig_982.8.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_982.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_982contigC-australica_Contig_982:15429..16744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FM51
PFAMsFAM194
Model size903
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue3.62e-30
EggNOG OGs29SX0@1|root,2RXEY@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-01_010660.1
DescriptionFAM194 protein
Cds size750
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_982.8.1prot_C-australica_Contig_982.8.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_982 15582..16744 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588849.8570259-UTR-C-australica_Contig_982:15428..155811682588849.8570259-UTR-C-australica_Contig_982:15428..15581Chrysoparadoxa australica CS_1217UTRC-australica_Contig_982 15429..15581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588849.8709025-CDS-C-australica_Contig_982:15581..157171682588849.8709025-CDS-C-australica_Contig_982:15581..15717Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 15582..15717 +
1682588849.8802907-CDS-C-australica_Contig_982:15794..160361682588849.8802907-CDS-C-australica_Contig_982:15794..16036Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 15795..16036 +
1682588849.8890283-CDS-C-australica_Contig_982:16109..162531682588849.8890283-CDS-C-australica_Contig_982:16109..16253Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 16110..16253 +
1682588849.8977525-CDS-C-australica_Contig_982:16347..164051682588849.8977525-CDS-C-australica_Contig_982:16347..16405Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 16348..16405 +
1682588849.906578-CDS-C-australica_Contig_982:16478..165401682588849.906578-CDS-C-australica_Contig_982:16478..16540Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 16479..16540 +
1682588849.9158988-CDS-C-australica_Contig_982:16636..167441682588849.9158988-CDS-C-australica_Contig_982:16636..16744Chrysoparadoxa australica CS_1217CDSC-australica_Contig_982 16637..16744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_982.8.1

>prot_C-australica_Contig_982.8.1 ID=prot_C-australica_Contig_982.8.1|Name=mRNA_C-australica_Contig_982.8.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=250bp
MGGKQDGDQDLRYANGKRAVCVAANNTLCFDEKGSLVAALDEQGSGFVRG
SVAEGVALVLNPKGGLLREKGMIKKEWRWDPVMHKQCGAPPPSLCLQPGK
HFIFEMTARDRQTITFSQAGRTHTLEVGLRSKPFVSQPRITLVKRNIMHC
EDMALKRDLLKPQSKNMAGELKDMVGRLESCFDGLEPSVEPFLGFRQIKE
DALQATQSELPRIKASGGETGPMRGFGATLYQDAPAASSLEGSRFMAEGT
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mRNA from alignment at C-australica_Contig_982:15429..16744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_982.8.1 ID=mRNA_C-australica_Contig_982.8.1|Name=mRNA_C-australica_Contig_982.8.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1316bp|location=Sequence derived from alignment at C-australica_Contig_982:15429..16744+ (Chrysoparadoxa australica CS_1217)
AGCTTGGTCTACTACTGCAATGATACCAGAAGTACTGTGAGCGTGGTGGA
ATTCAGGTTAGCAAGCGGGAGGTGCAAGTTTCCCTGCTTGCACCCACTTT
TCGTCTCTCCGATTTGAGTGAAGTTTCGATAGGGGTTTCAATAACCCAGA
GAGATGGGGGGGAAGCAAGATGGAGATCAGGACTTGAGGTATGCAAATGG
TAAGAGAGCCGTCTGCGTTGCGGCGAACAACACACTCTGCTTTGATGAGA
AAGGATCGTTGGTGGCGGCCTTGGATGAACAGGGGTCAGGTGAGAGGAGA
ATGCAACCCAGCCTGCTTAAAACATGACTACAGTTTGATCTAACTTATCT
AAACCTGACTGAGCAGGATTTGTGAGAGGTTCGGTGGCTGAGGGTGTTGC
ACTGGTCCTAAACCCAAAGGGGGGCTTGCTGAGGGAAAAAGGCATGATTA
AGAAGGAGTGGCGCTGGGATCCAGTCATGCATAAGCAGTGCGGTGCACCG
CCACCATCCCTCTGCCTGCAGCCTGGCAAGCACTTTATCTTTGAGATGAC
TGCAAGGGACCGGCAGACCATAACGTTCTCCCAAGCAGGCAGAACCCACA
CTCTGGAGGTTGGTCCCTAGCTTTCAAGCCAAAGCTCACATGGAGGAGCT
AAGCAACAAGCTGCATCTATGGCACTCACAGGTCGGCCTTCGCTCCAAGC
CGTTCGTCTCGCAGCCGAGGATAACTCTTGTGAAGAGAAACATTATGCAT
TGCGAGGACATGGCTCTGAAGCGGGATCTTCTCAAGCCACAGAGCAAGAA
CATGGCTGGAGAGCTGAAGGATATGGTGCGTGACCACTGCATGACCACTG
CATGGCTGCTGCCCTCACCATTCAGCTTATGGAGAGGCAAGAAGCTCTGA
CCAATCTCCTCTATCCCAGGTGGGGCGTTTGGAGAGCTGCTTTGACGGAC
TTGAGCCCTCTGTGGAGCCATTTCTTGGTCCGCCCCTTACCCTTAAACGT
GTCCTCATGTTTGGAAGCAACAATCTCACCACCTCTTCTGCTGCGAGCAG
GCTTTAGGCAGATCAAGGAAGATGCGCTCCAAGCAACCCAATCAGAACTG
CCAAGAATAAAGGTAATTGAAGCAGTCTTATTCGGAGCCAATCCCTGCCC
CTCCTGCTCTCAGGAGCTGACCTGATATGGCCTACGCTTCCCAATTTTTG
ATATCAAGGCTAGCGGTGGGGAAACCGGGCCGATGAGAGGGTTTGGGGCC
ACCCTCTACCAAGATGCACCCGCTGCGTCTTCATTAGAGGGGAGCAGGTT
CATGGCTGAAGGAACG
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Coding sequence (CDS) from alignment at C-australica_Contig_982:15429..16744+

>mRNA_C-australica_Contig_982.8.1 ID=mRNA_C-australica_Contig_982.8.1|Name=mRNA_C-australica_Contig_982.8.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=750bp|location=Sequence derived from alignment at C-australica_Contig_982:15429..16744+ (Chrysoparadoxa australica CS_1217)
ATGGGGGGGAAGCAAGATGGAGATCAGGACTTGAGGTATGCAAATGGTAA
GAGAGCCGTCTGCGTTGCGGCGAACAACACACTCTGCTTTGATGAGAAAG
GATCGTTGGTGGCGGCCTTGGATGAACAGGGGTCAGGATTTGTGAGAGGT
TCGGTGGCTGAGGGTGTTGCACTGGTCCTAAACCCAAAGGGGGGCTTGCT
GAGGGAAAAAGGCATGATTAAGAAGGAGTGGCGCTGGGATCCAGTCATGC
ATAAGCAGTGCGGTGCACCGCCACCATCCCTCTGCCTGCAGCCTGGCAAG
CACTTTATCTTTGAGATGACTGCAAGGGACCGGCAGACCATAACGTTCTC
CCAAGCAGGCAGAACCCACACTCTGGAGGTCGGCCTTCGCTCCAAGCCGT
TCGTCTCGCAGCCGAGGATAACTCTTGTGAAGAGAAACATTATGCATTGC
GAGGACATGGCTCTGAAGCGGGATCTTCTCAAGCCACAGAGCAAGAACAT
GGCTGGAGAGCTGAAGGATATGGTGGGGCGTTTGGAGAGCTGCTTTGACG
GACTTGAGCCCTCTGTGGAGCCATTTCTTGGCTTTAGGCAGATCAAGGAA
GATGCGCTCCAAGCAACCCAATCAGAACTGCCAAGAATAAAGGCTAGCGG
TGGGGAAACCGGGCCGATGAGAGGGTTTGGGGCCACCCTCTACCAAGATG
CACCCGCTGCGTCTTCATTAGAGGGGAGCAGGTTCATGGCTGAAGGAACG
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